Wall clock time and date at job start Tue Mar 31 2020 13:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00035 * 2 1 4 4 C 1.32993 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99785 * 359.97438 * 4 2 1 6 6 O 1.21615 * 120.00256 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99779 * 180.02562 * 5 4 2 8 8 C 1.48107 * 127.04426 * 6.24820 * 7 5 4 9 9 C 1.54858 * 103.25662 * 140.80897 * 8 7 5 10 10 C 1.54578 * 102.87622 * 37.40280 * 9 8 7 11 11 H 1.09008 * 118.12422 * 117.59442 * 10 9 8 12 12 C 1.52936 * 118.20087 * 274.55426 * 10 9 8 13 13 C 1.47528 * 127.04121 * 186.25774 * 7 5 4 14 14 C 1.50699 * 117.67895 * 64.59323 * 13 7 5 15 15 O 1.21278 * 119.99886 * 99.85898 * 14 13 7 16 16 N 1.34777 * 119.99715 * 279.86155 * 14 13 7 17 17 C 1.47069 * 136.05687 * 4.12572 * 16 14 13 18 18 C 1.53241 * 88.08128 * 207.20170 * 17 16 14 19 19 C 1.50699 * 114.50853 * 220.45771 * 18 17 16 20 20 H 1.07996 * 120.00181 * 93.84955 * 19 18 17 21 21 C 1.37883 * 119.99757 * 273.84463 * 19 18 17 22 22 N 1.31510 * 120.00186 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99625 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46778 * 90.00820 * 23 21 19 25 25 H 1.48501 * 109.46751 * 210.00142 * 23 21 19 26 26 H 1.48498 * 109.47460 * 330.00572 * 23 21 19 27 27 C 1.47066 * 136.05378 * 184.49973 * 16 14 13 28 28 H 1.09005 * 109.47039 * 240.00085 * 1 2 3 29 29 H 1.09000 * 109.47510 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47273 * 120.00156 * 1 2 3 31 31 H 1.09002 * 109.47228 * 270.00273 * 3 2 1 32 32 H 1.09002 * 109.47078 * 30.00192 * 3 2 1 33 33 H 1.09000 * 109.47254 * 150.00124 * 3 2 1 34 34 H 1.08001 * 120.00370 * 180.02562 * 4 2 1 35 35 H 1.09004 * 110.66185 * 259.21878 * 8 7 5 36 36 H 1.09000 * 110.66597 * 22.33507 * 8 7 5 37 37 H 1.08995 * 110.74110 * 279.04770 * 9 8 7 38 38 H 1.09000 * 110.71346 * 155.74463 * 9 8 7 39 39 H 1.08995 * 117.45806 * 199.22878 * 12 10 9 40 40 H 1.09001 * 117.45579 * 344.03574 * 12 10 9 41 41 H 1.08993 * 113.47246 * 321.93499 * 17 16 14 42 42 H 1.09000 * 113.46265 * 92.38026 * 17 16 14 43 43 H 1.09004 * 114.01422 * 87.71608 * 18 17 16 44 44 H 0.97003 * 120.00038 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.46867 * 267.62028 * 27 16 14 46 46 H 1.08997 * 113.47180 * 38.00089 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 0.0004 7 7 2.1104 -3.5929 -0.0005 8 6 3.5742 -3.7780 0.1281 9 6 3.6958 -5.0315 1.0292 10 6 2.5273 -5.9194 0.5438 11 1 2.7659 -6.8887 0.1060 12 6 1.1428 -5.6874 1.1508 13 6 1.5411 -4.9478 -0.1289 14 6 0.8593 -5.3007 -1.4257 15 8 1.4489 -5.9491 -2.2639 16 7 -0.4058 -4.8956 -1.6538 17 6 -1.3942 -4.0634 -0.9514 18 6 -2.4937 -4.8692 -1.6513 19 6 -3.6625 -4.0473 -2.1303 20 1 -3.6817 -3.6752 -3.1439 21 6 -4.7074 -3.7703 -1.2743 22 7 -4.6838 -4.2231 -0.0398 23 14 -6.1558 -2.7508 -1.8678 24 1 -7.1905 -3.6481 -2.4417 25 1 -6.7323 -1.9978 -0.7250 26 1 -5.6960 -1.7962 -2.9082 27 6 -1.4074 -5.0965 -2.7117 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0647 0.5139 33 1 3.2129 1.1747 0.5138 34 1 3.2520 -1.1518 -0.0001 35 1 4.0260 -3.9605 -0.8469 36 1 4.0306 -2.9126 0.6087 37 1 3.5688 -4.7663 2.0787 38 1 4.6517 -5.5302 0.8690 39 1 0.4130 -6.4918 1.0599 40 1 1.0886 -5.1058 2.0712 41 1 -1.3828 -4.1959 0.1304 42 1 -1.3685 -3.0150 -1.2485 43 1 -2.7916 -5.7710 -1.1164 44 1 -5.4187 -4.0279 0.5625 45 1 -1.3853 -4.3260 -3.4825 46 1 -1.4066 -6.1053 -3.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268877733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:12 Heat of formation + Delta-G solvation = 28.535300 kcal Electronic energy + Delta-G solvation = -28067.435797 eV Core-core repulsion = 24346.327549 eV Total energy + Delta-G solvation = -3721.108248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78683 -38.95228 -38.35216 -36.63743 -35.25423 -33.21246 -32.56394 -30.63536 -28.96220 -28.11530 -27.60485 -25.38110 -24.74267 -23.78371 -23.34644 -21.39436 -20.66200 -19.43574 -18.36490 -17.95476 -16.77655 -16.59397 -16.08746 -15.80976 -15.35236 -14.69024 -14.53786 -14.36293 -14.24519 -14.08337 -13.60282 -13.52414 -13.39327 -12.87724 -12.76327 -12.46523 -12.35154 -12.19103 -12.00051 -11.82400 -11.67828 -11.58084 -11.28271 -11.15954 -11.09858 -10.83880 -10.74750 -10.61920 -10.27642 -10.18026 -9.61188 -9.35260 -9.16238 -9.02619 -8.88995 -8.44478 -8.31325 -7.68976 -6.06390 -4.10473 1.43034 2.64429 3.28194 3.30423 3.36734 3.38529 3.42400 3.50600 3.77856 4.41125 4.43729 4.51082 4.72900 4.80211 4.84620 5.05756 5.06715 5.15683 5.19491 5.26022 5.33431 5.37044 5.46038 5.60706 5.62523 5.68164 5.75545 5.80616 5.85462 6.05499 6.10022 6.18252 6.21951 6.33064 6.35604 6.39777 6.52927 6.58483 6.63558 6.94801 7.01700 7.18063 7.67560 7.69486 7.91863 8.32238 8.45823 8.60838 8.86218 8.91540 9.54545 11.03672 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.005141 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.787273 B = 5444.913774 C = 7184.675486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.030 4.030 3 C -0.125 4.125 4 C -0.234 4.234 5 C 0.552 3.448 6 O -0.501 6.501 7 N -0.587 5.587 8 C 0.106 3.894 9 C -0.104 4.104 10 C -0.136 4.136 11 H 0.127 0.873 12 C -0.132 4.132 13 C 0.071 3.929 14 C 0.568 3.432 15 O -0.565 6.565 16 N -0.626 5.626 17 C 0.134 3.866 18 C 0.025 3.975 19 C -0.513 4.513 20 H 0.061 0.939 21 C 0.070 3.930 22 N -0.884 5.884 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.099 3.901 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.262 0.738 45 H 0.071 0.929 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.171 5.822 5.068 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.032 4.032 3 C -0.182 4.182 4 C -0.255 4.255 5 C 0.345 3.655 6 O -0.377 6.377 7 N -0.323 5.323 8 C -0.016 4.016 9 C -0.142 4.142 10 C -0.155 4.155 11 H 0.145 0.855 12 C -0.171 4.171 13 C -0.019 4.019 14 C 0.354 3.646 15 O -0.446 6.446 16 N -0.357 5.357 17 C 0.012 3.988 18 C 0.006 3.994 19 C -0.551 4.551 20 H 0.079 0.921 21 C -0.134 4.134 22 N -0.521 5.521 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.023 4.023 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.861 5.565 4.824 18.399 hybrid contribution -0.539 0.587 -0.258 0.837 sum 16.322 6.152 4.567 18.031 Atomic orbital electron populations 1.21100 0.90179 1.01196 1.05077 1.22618 0.97263 0.94190 0.89114 1.21007 0.99864 0.94473 1.02819 1.22258 0.99583 0.91642 1.12008 1.18396 0.87472 0.82713 0.76968 1.90968 1.12609 1.86308 1.47779 1.48112 1.07008 1.03190 1.74026 1.22673 0.80844 0.98143 0.99948 1.22366 0.97654 0.94513 0.99661 1.23675 0.90276 0.99105 1.02449 0.85495 1.23457 0.96082 1.01514 0.95998 1.21276 1.04166 0.82645 0.93765 1.18701 0.79745 0.80176 0.85962 1.90625 1.64485 1.43056 1.46390 1.50003 1.10813 1.48656 1.26242 1.23427 0.82837 0.95308 0.97205 1.20414 0.90642 0.96804 0.91541 1.20855 1.02910 1.33110 0.98214 0.92076 1.24990 0.98009 0.95553 0.94823 1.69961 1.32205 1.44806 1.05168 0.86578 0.82585 0.80368 0.78380 1.20600 1.21196 1.19769 1.23381 0.86023 0.99723 0.93138 0.89503 0.93068 0.89377 0.90390 0.90922 0.91376 0.86163 0.90761 0.89738 0.90329 0.89343 0.87134 0.87965 0.92435 0.90001 0.91813 0.92817 0.91095 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 8.33 36.00 0.30 -1.37 16 2 C -0.03 -0.36 6.11 -101.17 -0.62 -0.98 16 3 C -0.13 -1.02 9.98 36.00 0.36 -0.66 16 4 C -0.23 -2.97 9.09 -37.81 -0.34 -3.31 16 5 C 0.55 9.11 7.79 -12.66 -0.10 9.01 16 6 O -0.50 -9.91 8.84 5.26 0.05 -9.86 16 7 N -0.59 -9.04 3.16 -157.76 -0.50 -9.54 16 8 C 0.11 1.16 6.81 -2.18 -0.01 1.14 16 9 C -0.10 -1.00 6.85 -24.92 -0.17 -1.17 16 10 C -0.14 -1.79 6.83 -89.35 -0.61 -2.40 16 11 H 0.13 1.65 8.14 -51.92 -0.42 1.22 16 12 C -0.13 -1.98 10.01 -26.73 -0.27 -2.25 16 13 C 0.07 1.22 2.17 -131.89 -0.29 0.94 16 14 C 0.57 12.28 7.78 -10.99 -0.09 12.19 16 15 O -0.57 -13.44 17.78 5.56 0.10 -13.34 16 16 N -0.63 -14.23 3.69 -185.36 -0.68 -14.91 16 17 C 0.13 3.20 5.47 -8.63 -0.05 3.16 16 18 C 0.03 0.64 3.76 -91.39 -0.34 0.29 16 19 C -0.51 -13.82 8.84 -34.44 -0.30 -14.12 16 20 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 21 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 22 N -0.88 -25.18 13.26 55.43 0.74 -24.44 16 23 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.10 2.27 8.19 -8.49 -0.07 2.20 16 28 H 0.09 1.37 7.22 -51.93 -0.37 0.99 16 29 H 0.05 0.60 7.94 -51.93 -0.41 0.19 16 30 H 0.09 1.47 7.22 -51.93 -0.37 1.10 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 33 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 34 H 0.12 1.19 6.83 -52.49 -0.36 0.83 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.69 6.86 -51.93 -0.36 0.33 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.06 1.44 7.80 -51.93 -0.41 1.04 16 42 H 0.08 2.06 6.74 -51.93 -0.35 1.71 16 43 H 0.06 1.73 8.11 -51.93 -0.42 1.31 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 46 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -32.59 375.27 -9.61 -42.19 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.24 Total: 3.89 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.70 Total: 4.46 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.45 Total: -48.90 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.15 Total: -23.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.59 -9.61 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268877733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.727 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds