Wall clock time and date at job start Tue Mar 31 2020 13:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00035 * 2 1 4 4 C 1.32993 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.47102 * 119.99785 * 359.97438 * 4 2 1 6 6 O 1.21615 * 120.00256 * 359.97438 * 5 4 2 7 7 N 1.34782 * 119.99779 * 180.02562 * 5 4 2 8 8 C 1.48107 * 127.04426 * 6.24820 * 7 5 4 9 9 C 1.54858 * 103.25662 * 140.80897 * 8 7 5 10 10 C 1.54578 * 102.87622 * 37.40280 * 9 8 7 11 11 H 1.09008 * 118.12422 * 117.59442 * 10 9 8 12 12 C 1.52936 * 118.20087 * 274.55426 * 10 9 8 13 13 C 1.47528 * 127.04121 * 186.25774 * 7 5 4 14 14 C 1.50699 * 117.67895 * 64.59323 * 13 7 5 15 15 O 1.21278 * 119.99886 * 99.85898 * 14 13 7 16 16 N 1.34777 * 119.99715 * 279.86155 * 14 13 7 17 17 C 1.47069 * 136.05687 * 4.12572 * 16 14 13 18 18 C 1.53241 * 88.08128 * 207.20170 * 17 16 14 19 19 C 1.50699 * 114.50853 * 220.45771 * 18 17 16 20 20 H 1.07996 * 120.00181 * 93.84955 * 19 18 17 21 21 C 1.37883 * 119.99757 * 273.84463 * 19 18 17 22 22 N 1.31510 * 120.00186 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99625 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46778 * 90.00820 * 23 21 19 25 25 H 1.48501 * 109.46751 * 210.00142 * 23 21 19 26 26 H 1.48498 * 109.47460 * 330.00572 * 23 21 19 27 27 C 1.47066 * 136.05378 * 184.49973 * 16 14 13 28 28 H 1.09005 * 109.47039 * 240.00085 * 1 2 3 29 29 H 1.09000 * 109.47510 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47273 * 120.00156 * 1 2 3 31 31 H 1.09002 * 109.47228 * 270.00273 * 3 2 1 32 32 H 1.09002 * 109.47078 * 30.00192 * 3 2 1 33 33 H 1.09000 * 109.47254 * 150.00124 * 3 2 1 34 34 H 1.08001 * 120.00370 * 180.02562 * 4 2 1 35 35 H 1.09004 * 110.66185 * 259.21878 * 8 7 5 36 36 H 1.09000 * 110.66597 * 22.33507 * 8 7 5 37 37 H 1.08995 * 110.74110 * 279.04770 * 9 8 7 38 38 H 1.09000 * 110.71346 * 155.74463 * 9 8 7 39 39 H 1.08995 * 117.45806 * 199.22878 * 12 10 9 40 40 H 1.09001 * 117.45579 * 344.03574 * 12 10 9 41 41 H 1.08993 * 113.47246 * 321.93499 * 17 16 14 42 42 H 1.09000 * 113.46265 * 92.38026 * 17 16 14 43 43 H 1.09004 * 114.01422 * 87.71608 * 18 17 16 44 44 H 0.97003 * 120.00038 * 179.97438 * 22 21 19 45 45 H 1.09001 * 113.46867 * 267.62028 * 27 16 14 46 46 H 1.08997 * 113.47180 * 38.00089 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4365 -2.4257 -0.0005 6 8 0.2203 -2.4257 0.0004 7 7 2.1104 -3.5929 -0.0005 8 6 3.5742 -3.7780 0.1281 9 6 3.6958 -5.0315 1.0292 10 6 2.5273 -5.9194 0.5438 11 1 2.7659 -6.8887 0.1060 12 6 1.1428 -5.6874 1.1508 13 6 1.5411 -4.9478 -0.1289 14 6 0.8593 -5.3007 -1.4257 15 8 1.4489 -5.9491 -2.2639 16 7 -0.4058 -4.8956 -1.6538 17 6 -1.3942 -4.0634 -0.9514 18 6 -2.4937 -4.8692 -1.6513 19 6 -3.6625 -4.0473 -2.1303 20 1 -3.6817 -3.6752 -3.1439 21 6 -4.7074 -3.7703 -1.2743 22 7 -4.6838 -4.2231 -0.0398 23 14 -6.1558 -2.7508 -1.8678 24 1 -7.1905 -3.6481 -2.4417 25 1 -6.7323 -1.9978 -0.7250 26 1 -5.6960 -1.7962 -2.9082 27 6 -1.4074 -5.0965 -2.7117 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0647 0.5139 33 1 3.2129 1.1747 0.5138 34 1 3.2520 -1.1518 -0.0001 35 1 4.0260 -3.9605 -0.8469 36 1 4.0306 -2.9126 0.6087 37 1 3.5688 -4.7663 2.0787 38 1 4.6517 -5.5302 0.8690 39 1 0.4130 -6.4918 1.0599 40 1 1.0886 -5.1058 2.0712 41 1 -1.3828 -4.1959 0.1304 42 1 -1.3685 -3.0150 -1.2485 43 1 -2.7916 -5.7710 -1.1164 44 1 -5.4187 -4.0279 0.5625 45 1 -1.3853 -4.3260 -3.4825 46 1 -1.4066 -6.1053 -3.1244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268877733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:12 Heat of formation + Delta-G solvation = 8.683000 kcal Electronic energy + Delta-G solvation = -28068.296657 eV Core-core repulsion = 24346.327549 eV Total energy + Delta-G solvation = -3721.969108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07950 -40.59863 -39.69630 -38.38332 -36.25056 -34.67281 -34.36147 -31.81499 -30.68737 -29.00394 -28.61883 -27.32607 -26.70608 -24.95455 -24.54601 -22.92287 -21.69460 -21.11343 -19.76823 -19.16770 -18.68300 -18.03373 -17.59477 -17.15179 -16.84215 -16.51760 -16.07473 -15.83377 -15.34680 -15.22157 -14.94694 -14.67775 -14.45737 -14.25259 -14.16158 -13.84753 -13.65152 -13.33793 -13.27737 -13.18545 -13.08980 -12.81952 -12.76261 -12.69291 -12.64088 -12.44050 -12.20520 -12.14904 -11.79949 -11.44934 -11.33977 -11.11597 -10.79527 -10.62858 -10.35074 -10.14559 -9.62390 -9.53306 -8.17853 -6.29264 0.41468 1.21364 1.43848 1.44454 1.55308 1.84782 2.02759 2.32077 2.39899 2.44528 3.11295 3.36537 3.44071 3.52278 3.77096 3.88225 3.91198 4.18105 4.21395 4.23998 4.32359 4.36144 4.43685 4.51899 4.56543 4.59698 4.62375 4.66097 4.69733 4.78443 4.85407 4.91024 4.94055 4.97674 5.03529 5.04002 5.10977 5.18257 5.23427 5.34332 5.51738 5.56169 5.67320 5.78785 6.21294 6.57049 6.77105 6.79703 7.05424 7.26506 7.39617 8.92769 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.005141 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.787273 B = 5444.913774 C = 7184.675486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.025 4.025 3 C -0.119 4.119 4 C -0.239 4.239 5 C 0.535 3.465 6 O -0.550 6.550 7 N -0.588 5.588 8 C 0.100 3.900 9 C -0.093 4.093 10 C -0.102 4.102 11 H 0.131 0.869 12 C -0.136 4.136 13 C 0.032 3.968 14 C 0.562 3.438 15 O -0.589 6.589 16 N -0.632 5.632 17 C 0.167 3.833 18 C 0.017 3.983 19 C -0.529 4.529 20 H 0.064 0.936 21 C 0.021 3.979 22 N -0.918 5.918 23 Si 0.961 3.039 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.266 1.266 27 C 0.104 3.896 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.158 0.842 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.264 0.736 45 H 0.076 0.924 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.897 7.437 5.533 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.027 4.027 3 C -0.175 4.175 4 C -0.260 4.260 5 C 0.329 3.671 6 O -0.429 6.429 7 N -0.323 5.323 8 C -0.021 4.021 9 C -0.130 4.130 10 C -0.121 4.121 11 H 0.148 0.852 12 C -0.174 4.174 13 C -0.058 4.058 14 C 0.351 3.649 15 O -0.471 6.471 16 N -0.363 5.363 17 C 0.045 3.955 18 C -0.002 4.002 19 C -0.567 4.567 20 H 0.082 0.918 21 C -0.180 4.180 22 N -0.556 5.556 23 Si 0.786 3.214 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.190 1.190 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.175 0.825 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.643 7.165 5.287 21.567 hybrid contribution -1.377 0.024 -0.425 1.441 sum 18.267 7.188 4.862 20.223 Atomic orbital electron populations 1.20966 0.92561 1.01519 1.02255 1.22882 0.95913 0.96118 0.87785 1.21061 1.00408 0.92091 1.03968 1.22396 1.01058 0.89691 1.12816 1.19242 0.87391 0.84245 0.76233 1.90946 1.14830 1.87124 1.50048 1.48327 1.08890 1.01957 1.73135 1.23011 0.78049 1.00273 1.00723 1.22488 0.97291 0.93100 1.00165 1.23953 0.90437 0.98635 0.99120 0.85159 1.23451 0.97768 1.00891 0.95306 1.21230 1.07131 0.85283 0.92160 1.19575 0.78989 0.78982 0.87395 1.90585 1.64731 1.43923 1.47886 1.50051 1.11587 1.48858 1.25805 1.22848 0.82835 0.94276 0.95561 1.20309 0.91343 0.95916 0.92661 1.21140 1.03698 1.33356 0.98469 0.91794 1.25805 1.00748 0.96588 0.94822 1.70085 1.33166 1.46036 1.06326 0.85510 0.79067 0.78840 0.77983 1.19733 1.20868 1.18985 1.23229 0.85459 1.00278 0.92816 0.92050 0.90906 0.92929 0.89219 0.89948 0.89059 0.82454 0.90794 0.86129 0.88672 0.85904 0.88611 0.87210 0.94511 0.91532 0.94466 0.92691 0.90599 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.38 8.33 71.23 0.59 -2.79 16 2 C -0.03 -0.56 6.11 -17.62 -0.11 -0.67 16 3 C -0.12 -1.52 9.98 71.23 0.71 -0.81 16 4 C -0.24 -5.62 9.09 23.43 0.21 -5.41 16 5 C 0.53 17.72 7.79 86.57 0.67 18.40 16 6 O -0.55 -23.05 8.84 -4.08 -0.04 -23.09 16 7 N -0.59 -17.55 3.16 -771.27 -2.44 -19.99 16 8 C 0.10 1.83 6.81 86.70 0.59 2.42 16 9 C -0.09 -1.41 6.85 31.77 0.22 -1.20 16 10 C -0.10 -2.52 6.83 -9.97 -0.07 -2.59 16 11 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 12 C -0.14 -4.11 10.01 30.60 0.31 -3.80 16 13 C 0.03 1.10 2.17 2.99 0.01 1.11 16 14 C 0.56 25.00 7.78 87.66 0.68 25.68 16 15 O -0.59 -28.45 17.78 -3.02 -0.05 -28.51 16 16 N -0.63 -30.14 3.69 -858.73 -3.17 -33.31 16 17 C 0.17 8.54 5.47 83.10 0.45 8.99 16 18 C 0.02 0.91 3.76 -11.29 -0.04 0.87 16 19 C -0.53 -29.50 8.84 25.60 0.23 -29.27 16 20 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 21 C 0.02 1.15 5.46 84.66 0.46 1.61 16 22 N -0.92 -54.13 13.26 21.45 0.28 -53.84 16 23 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 27 C 0.10 4.99 8.19 83.19 0.68 5.67 16 28 H 0.06 2.07 7.22 -2.38 -0.02 2.06 16 29 H 0.07 1.70 7.94 -2.39 -0.02 1.68 16 30 H 0.05 1.89 7.22 -2.39 -0.02 1.88 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 0.92 8.05 -2.39 -0.02 0.90 16 33 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 34 H 0.16 2.43 6.83 -2.91 -0.02 2.41 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.12 1.35 6.86 -2.39 -0.02 1.33 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.11 3.10 8.14 -2.39 -0.02 3.09 16 41 H 0.04 1.99 7.80 -2.39 -0.02 1.97 16 42 H 0.07 3.61 6.74 -2.39 -0.02 3.59 16 43 H 0.04 2.16 8.11 -2.39 -0.02 2.15 16 44 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.08 3.52 8.10 -2.39 -0.02 3.50 16 46 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -75.74 375.27 3.18 -72.56 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.97 Total: 22.34 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 5.60 Total: 18.22 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -5.33 Total: -107.14 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.09 Total: -51.59 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -75.74 3.18 -72.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268877733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.238 kcal (2) G-P(sol) polarization free energy of solvation -75.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds