Wall clock time and date at job start Tue Mar 31 2020 12:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32988 * 120.00019 * 2 1 4 4 C 1.50696 * 120.00407 * 359.97438 * 3 2 1 5 5 C 1.47108 * 119.99808 * 180.02562 * 3 2 1 6 6 O 1.21613 * 119.99960 * 359.97438 * 5 3 2 7 7 N 1.34777 * 120.00078 * 180.02562 * 5 3 2 8 8 C 1.46498 * 119.99828 * 180.27699 * 7 5 3 9 9 C 1.54886 * 129.08996 * 299.65739 * 8 7 5 10 10 C 1.57170 * 77.91885 * 180.16704 * 9 8 7 11 11 C 1.50699 * 129.24941 * 179.19529 * 10 9 8 12 12 O 1.21280 * 120.00036 * 241.28264 * 11 10 9 13 13 N 1.34779 * 120.00003 * 61.28582 * 11 10 9 14 14 C 1.47063 * 136.05669 * 359.63167 * 13 11 10 15 15 C 1.53757 * 87.88655 * 152.96255 * 14 13 11 16 16 C 1.50698 * 114.08714 * 139.78158 * 15 14 13 17 17 H 1.08001 * 119.99712 * 266.55273 * 16 15 14 18 18 C 1.37875 * 120.00242 * 86.55576 * 16 15 14 19 19 N 1.31511 * 120.00249 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99958 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46762 * 60.00257 * 20 18 16 22 22 H 1.48493 * 109.47247 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47218 * 300.00313 * 20 18 16 24 24 C 1.47066 * 136.05510 * 179.97438 * 13 11 10 25 25 C 1.54416 * 83.72871 * 42.47587 * 10 9 8 26 26 C 1.54892 * 83.77200 * 317.35487 * 10 9 8 27 27 H 1.09006 * 109.46797 * 300.00296 * 1 2 3 28 28 H 1.09002 * 109.46946 * 59.99711 * 1 2 3 29 29 H 1.08994 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99468 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47288 * 270.00219 * 4 3 2 32 32 H 1.09001 * 109.46749 * 30.00368 * 4 3 2 33 33 H 1.08997 * 109.47440 * 150.00308 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 7 5 3 35 35 H 1.09001 * 114.98035 * 291.96293 * 9 8 7 36 36 H 1.09001 * 114.98031 * 67.13095 * 9 8 7 37 37 H 1.09005 * 113.46180 * 267.69061 * 14 13 11 38 38 H 1.08993 * 113.47401 * 38.12979 * 14 13 11 39 39 H 1.09006 * 114.39219 * 272.67004 * 15 14 13 40 40 H 0.96994 * 120.00251 * 179.97438 * 19 18 16 41 41 H 1.08995 * 113.46930 * 321.86561 * 24 13 11 42 42 H 1.08995 * 113.46861 * 92.30712 * 24 13 11 43 43 H 1.08998 * 114.92862 * 205.06604 * 25 10 9 44 44 H 1.08991 * 114.98666 * 70.03161 * 25 10 9 45 45 H 1.09001 * 116.12289 * 290.12317 * 26 10 9 46 46 H 1.08999 * 113.82857 * 154.95513 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3170 2.3188 0.0000 8 6 5.7820 2.3187 -0.0067 9 6 6.7633 1.7206 1.0316 10 6 7.7439 2.3335 -0.0328 11 6 9.2507 2.3561 -0.0394 12 8 9.8414 3.4153 -0.0289 13 7 9.9420 1.1992 -0.0571 14 6 9.6090 -0.2332 -0.0670 15 6 10.9478 -0.4812 -0.7814 16 6 11.6804 -1.7093 -0.3058 17 1 12.4236 -1.6268 0.4735 18 6 11.4019 -2.9382 -0.8656 19 7 10.4974 -3.0386 -1.8149 20 14 12.3106 -4.4603 -0.2766 21 1 12.0545 -4.6599 1.1726 22 1 11.8322 -5.6458 -1.0321 23 1 13.7679 -4.2852 -0.5022 24 6 11.3612 0.8138 -0.0689 25 6 6.7541 3.5185 -0.0133 26 6 6.7539 1.7168 -1.0519 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.0469 -0.9354 0.0004 31 1 1.2373 2.7713 -1.0284 32 1 0.4660 2.3266 0.5130 33 1 2.0075 3.2166 0.5132 34 1 3.8320 3.1589 0.0003 35 1 6.7712 2.2218 1.9995 36 1 6.7557 0.6327 1.0987 37 1 9.5601 -0.6742 0.9287 38 1 8.7386 -0.4724 -0.6777 39 1 10.9007 -0.3983 -1.8672 40 1 10.3018 -3.9030 -2.2090 41 1 11.9832 1.4665 -0.6814 42 1 11.7745 0.6489 0.9260 43 1 6.7375 4.1183 -0.9233 44 1 6.7610 4.1092 0.9027 45 1 6.7457 0.6287 -1.1149 46 1 6.7529 2.2147 -2.0215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268886159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:01 Heat of formation + Delta-G solvation = 75.913014 kcal Electronic energy + Delta-G solvation = -26417.454862 eV Core-core repulsion = 22698.401066 eV Total energy + Delta-G solvation = -3719.053796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05644 -39.60704 -38.96548 -36.85478 -35.75613 -33.94648 -32.65501 -29.71992 -29.32576 -26.60161 -25.97145 -25.70221 -25.67289 -24.90288 -24.09743 -22.27192 -20.19973 -19.10990 -18.72130 -17.79029 -17.30815 -16.86944 -16.46723 -15.72747 -15.25119 -15.19690 -14.73191 -14.46232 -14.26284 -14.11312 -13.92821 -13.80071 -13.65879 -13.24140 -12.99780 -12.70455 -12.47138 -12.34044 -12.02184 -11.79686 -11.61588 -11.52279 -11.40644 -11.25185 -11.13491 -10.91940 -10.80883 -10.41668 -10.37322 -10.27123 -9.95456 -9.60613 -9.39393 -9.19012 -9.10367 -9.00181 -8.54963 -7.86319 -6.14549 -4.20535 1.11456 2.72487 2.92809 3.07702 3.28167 3.33720 3.35092 3.52053 4.12342 4.32545 4.35763 4.38570 4.48330 4.55398 4.58341 4.67955 4.82432 4.89081 5.02568 5.10227 5.16166 5.25952 5.32120 5.48843 5.56837 5.57674 5.62315 5.68664 5.85034 5.92778 6.02741 6.07647 6.10435 6.12280 6.19752 6.20768 6.28604 6.45625 6.50261 6.62480 6.72473 6.86366 7.33051 7.57638 7.82656 8.09248 8.20838 8.49284 8.76918 8.82978 9.46129 10.95094 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003147 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.163657 B = 8895.319165 C =10789.942691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 C -0.193 4.193 4 C -0.118 4.118 5 C 0.554 3.446 6 O -0.525 6.525 7 N -0.675 5.675 8 C 0.094 3.906 9 C -0.099 4.099 10 C -0.142 4.142 11 C 0.597 3.403 12 O -0.559 6.559 13 N -0.634 5.634 14 C 0.099 3.901 15 C 0.036 3.964 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.101 3.899 25 C -0.083 4.083 26 C -0.097 4.097 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.405 0.595 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.265 0.735 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.330 10.125 3.450 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.174 4.174 5 C 0.343 3.657 6 O -0.401 6.401 7 N -0.325 5.325 8 C 0.006 3.994 9 C -0.138 4.138 10 C -0.146 4.146 11 C 0.385 3.615 12 O -0.440 6.440 13 N -0.366 5.366 14 C -0.023 4.023 15 C 0.017 3.983 16 C -0.557 4.557 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.520 5.520 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.020 4.020 25 C -0.121 4.121 26 C -0.136 4.136 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.831 9.981 3.331 22.450 hybrid contribution 0.069 -0.477 0.345 0.593 sum -19.762 9.504 3.676 22.235 Atomic orbital electron populations 1.21002 0.92035 1.03218 1.02539 1.23628 0.96313 0.98088 0.90985 1.21345 0.92240 0.96900 1.09155 1.20831 1.00136 0.93929 1.02552 1.18443 0.87660 0.83456 0.76143 1.90851 1.69792 1.30900 1.48555 1.44570 1.03561 1.08896 1.75484 1.22816 0.79414 0.98680 0.98508 1.24811 0.91204 1.01758 0.96051 1.23611 0.91367 0.98970 1.00642 1.17786 0.84860 0.82412 0.76465 1.90644 1.70280 1.30137 1.52910 1.49887 1.10868 1.06260 1.69608 1.23712 1.02431 0.75380 1.00798 1.20386 0.90680 0.90840 0.96414 1.20852 1.22462 0.91155 1.21229 0.91870 1.25026 0.94833 0.99212 0.94406 1.69938 1.31675 1.25204 1.25216 0.86599 0.80133 0.82014 0.78940 1.20058 1.21228 1.20067 1.23381 0.81404 0.96570 1.00694 1.23969 0.90739 0.94593 1.02796 1.24354 0.90960 1.01980 0.96348 0.90623 0.90694 0.91270 0.85367 0.90864 0.90823 0.91821 0.75808 0.90597 0.89194 0.90768 0.92032 0.91291 0.92548 0.92311 0.90724 0.89986 0.89993 0.88975 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 8.91 36.01 0.32 -0.38 16 2 C -0.07 -0.61 9.84 -36.13 -0.36 -0.97 16 3 C -0.19 -1.77 6.00 -102.85 -0.62 -2.39 16 4 C -0.12 -0.65 9.14 36.00 0.33 -0.32 16 5 C 0.55 7.09 7.75 -12.66 -0.10 6.99 16 6 O -0.52 -9.03 16.10 5.27 0.08 -8.95 16 7 N -0.68 -7.40 5.66 -65.18 -0.37 -7.77 16 8 C 0.09 1.25 3.79 -148.41 -0.56 0.69 16 9 C -0.10 -1.50 7.88 -24.72 -0.19 -1.69 16 10 C -0.14 -2.36 3.33 -170.99 -0.57 -2.93 16 11 C 0.60 12.24 8.19 -10.99 -0.09 12.15 16 12 O -0.56 -12.86 17.87 5.56 0.10 -12.76 16 13 N -0.63 -13.41 3.69 -185.08 -0.68 -14.09 16 14 C 0.10 2.18 7.99 -8.37 -0.07 2.11 16 15 C 0.04 0.86 3.80 -91.13 -0.35 0.51 16 16 C -0.52 -13.39 8.82 -34.44 -0.30 -13.69 16 17 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.88 -24.53 13.26 55.43 0.74 -23.80 16 20 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.10 2.16 8.17 -8.52 -0.07 2.09 16 25 C -0.08 -1.07 7.78 -26.70 -0.21 -1.28 16 26 C -0.10 -1.53 7.76 -25.97 -0.20 -1.73 16 27 H 0.08 0.33 7.40 -51.93 -0.38 -0.06 16 28 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.13 1.33 7.49 -52.49 -0.39 0.93 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.31 6.49 -51.93 -0.34 -0.02 16 33 H 0.06 0.29 6.70 -51.93 -0.35 -0.06 16 34 H 0.41 3.04 6.93 -40.82 -0.28 2.75 16 35 H 0.08 1.04 7.91 -51.93 -0.41 0.63 16 36 H 0.09 1.52 7.97 -51.93 -0.41 1.10 16 37 H 0.07 1.61 8.10 -51.93 -0.42 1.19 16 38 H 0.06 1.38 7.83 -51.93 -0.41 0.97 16 39 H 0.07 1.80 8.11 -51.93 -0.42 1.38 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 43 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 44 H 0.08 0.97 7.91 -51.93 -0.41 0.56 16 45 H 0.09 1.64 7.66 -51.93 -0.40 1.24 16 46 H 0.08 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 385.17 15.07 5.80 5.80 Total: -1.00 -32.03 385.17 -9.58 -41.62 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.11 Total: 3.66 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -3.13 Total: 0.91 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.32 Total: -45.66 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: 0.18 Total: -21.71 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.03 -9.58 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268886159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.530 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds