Wall clock time and date at job start Tue Mar 31 2020 12:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32988 * 120.00019 * 2 1 4 4 C 1.50696 * 120.00407 * 359.97438 * 3 2 1 5 5 C 1.47108 * 119.99808 * 180.02562 * 3 2 1 6 6 O 1.21613 * 119.99960 * 359.97438 * 5 3 2 7 7 N 1.34777 * 120.00078 * 180.02562 * 5 3 2 8 8 C 1.46498 * 119.99828 * 180.27699 * 7 5 3 9 9 C 1.54886 * 129.08996 * 299.65739 * 8 7 5 10 10 C 1.57170 * 77.91885 * 180.16704 * 9 8 7 11 11 C 1.50699 * 129.24941 * 179.19529 * 10 9 8 12 12 O 1.21280 * 120.00036 * 241.28264 * 11 10 9 13 13 N 1.34779 * 120.00003 * 61.28582 * 11 10 9 14 14 C 1.47063 * 136.05669 * 359.63167 * 13 11 10 15 15 C 1.53757 * 87.88655 * 152.96255 * 14 13 11 16 16 C 1.50698 * 114.08714 * 139.78158 * 15 14 13 17 17 H 1.08001 * 119.99712 * 266.55273 * 16 15 14 18 18 C 1.37875 * 120.00242 * 86.55576 * 16 15 14 19 19 N 1.31511 * 120.00249 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99958 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46762 * 60.00257 * 20 18 16 22 22 H 1.48493 * 109.47247 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47218 * 300.00313 * 20 18 16 24 24 C 1.47066 * 136.05510 * 179.97438 * 13 11 10 25 25 C 1.54416 * 83.72871 * 42.47587 * 10 9 8 26 26 C 1.54892 * 83.77200 * 317.35487 * 10 9 8 27 27 H 1.09006 * 109.46797 * 300.00296 * 1 2 3 28 28 H 1.09002 * 109.46946 * 59.99711 * 1 2 3 29 29 H 1.08994 * 109.47241 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99468 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47288 * 270.00219 * 4 3 2 32 32 H 1.09001 * 109.46749 * 30.00368 * 4 3 2 33 33 H 1.08997 * 109.47440 * 150.00308 * 4 3 2 34 34 H 0.97001 * 119.99727 * 359.97438 * 7 5 3 35 35 H 1.09001 * 114.98035 * 291.96293 * 9 8 7 36 36 H 1.09001 * 114.98031 * 67.13095 * 9 8 7 37 37 H 1.09005 * 113.46180 * 267.69061 * 14 13 11 38 38 H 1.08993 * 113.47401 * 38.12979 * 14 13 11 39 39 H 1.09006 * 114.39219 * 272.67004 * 15 14 13 40 40 H 0.96994 * 120.00251 * 179.97438 * 19 18 16 41 41 H 1.08995 * 113.46930 * 321.86561 * 24 13 11 42 42 H 1.08995 * 113.46861 * 92.30712 * 24 13 11 43 43 H 1.08998 * 114.92862 * 205.06604 * 25 10 9 44 44 H 1.08991 * 114.98666 * 70.03161 * 25 10 9 45 45 H 1.09001 * 116.12289 * 290.12317 * 26 10 9 46 46 H 1.08999 * 113.82857 * 154.95513 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2511 0.0984 -0.0006 7 7 4.3170 2.3188 0.0000 8 6 5.7820 2.3187 -0.0067 9 6 6.7633 1.7206 1.0316 10 6 7.7439 2.3335 -0.0328 11 6 9.2507 2.3561 -0.0394 12 8 9.8414 3.4153 -0.0289 13 7 9.9420 1.1992 -0.0571 14 6 9.6090 -0.2332 -0.0670 15 6 10.9478 -0.4812 -0.7814 16 6 11.6804 -1.7093 -0.3058 17 1 12.4236 -1.6268 0.4735 18 6 11.4019 -2.9382 -0.8656 19 7 10.4974 -3.0386 -1.8149 20 14 12.3106 -4.4603 -0.2766 21 1 12.0545 -4.6599 1.1726 22 1 11.8322 -5.6458 -1.0321 23 1 13.7679 -4.2852 -0.5022 24 6 11.3612 0.8138 -0.0689 25 6 6.7541 3.5185 -0.0133 26 6 6.7539 1.7168 -1.0519 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.0469 -0.9354 0.0004 31 1 1.2373 2.7713 -1.0284 32 1 0.4660 2.3266 0.5130 33 1 2.0075 3.2166 0.5132 34 1 3.8320 3.1589 0.0003 35 1 6.7712 2.2218 1.9995 36 1 6.7557 0.6327 1.0987 37 1 9.5601 -0.6742 0.9287 38 1 8.7386 -0.4724 -0.6777 39 1 10.9007 -0.3983 -1.8672 40 1 10.3018 -3.9030 -2.2090 41 1 11.9832 1.4665 -0.6814 42 1 11.7745 0.6489 0.9260 43 1 6.7375 4.1183 -0.9233 44 1 6.7610 4.1092 0.9027 45 1 6.7457 0.6287 -1.1149 46 1 6.7529 2.2147 -2.0215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268886159.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:00 Heat of formation + Delta-G solvation = 55.773190 kcal Electronic energy + Delta-G solvation = -26418.328190 eV Core-core repulsion = 22698.401066 eV Total energy + Delta-G solvation = -3719.927124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.27507 -40.92403 -40.40413 -38.61054 -36.46757 -34.96923 -34.66925 -31.20737 -30.17125 -27.71845 -27.11725 -27.01671 -26.93038 -26.65478 -25.49312 -23.45121 -21.83197 -20.36793 -19.66156 -19.28945 -18.73408 -18.15577 -17.86492 -17.35505 -16.65846 -16.28615 -16.21736 -16.11294 -15.54882 -15.31950 -15.03005 -14.97477 -14.48803 -14.34292 -14.21058 -13.73734 -13.36191 -13.33892 -13.31783 -13.24709 -12.96042 -12.84872 -12.79045 -12.71928 -12.49782 -12.32206 -12.21803 -12.17815 -11.60441 -11.53901 -11.47655 -11.10236 -11.00163 -10.79027 -10.55398 -10.29008 -9.92680 -9.64799 -8.18275 -6.30355 0.34657 1.32722 1.47075 1.47823 1.55631 1.64727 2.01327 2.15474 2.44474 3.04261 3.11243 3.13481 3.23994 3.29308 3.36273 3.43588 3.77842 3.99718 4.20860 4.29271 4.33634 4.38754 4.45037 4.47732 4.52325 4.58497 4.66850 4.69495 4.73784 4.75468 4.78607 4.79838 4.84489 4.86461 4.92666 4.97051 5.02242 5.07782 5.18759 5.40465 5.49301 5.55369 5.65690 5.78250 6.19857 6.47286 6.77274 6.78757 7.07544 7.16121 7.39953 8.91560 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012811 B = 0.003147 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.163657 B = 8895.319165 C =10789.942691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.114 4.114 5 C 0.546 3.454 6 O -0.581 6.581 7 N -0.658 5.658 8 C 0.116 3.884 9 C -0.099 4.099 10 C -0.169 4.169 11 C 0.594 3.406 12 O -0.583 6.583 13 N -0.637 5.637 14 C 0.117 3.883 15 C 0.025 3.975 16 C -0.529 4.529 17 H 0.070 0.930 18 C 0.019 3.981 19 N -0.920 5.920 20 Si 0.961 3.039 21 H -0.267 1.267 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.108 3.892 25 C -0.058 4.058 26 C -0.105 4.105 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.426 0.574 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.039 0.961 40 H 0.264 0.736 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.261 11.922 4.578 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 C -0.205 4.205 4 C -0.170 4.170 5 C 0.337 3.663 6 O -0.461 6.461 7 N -0.310 5.310 8 C 0.027 3.973 9 C -0.138 4.138 10 C -0.173 4.173 11 C 0.385 3.615 12 O -0.465 6.465 13 N -0.369 5.369 14 C -0.006 4.006 15 C 0.006 3.994 16 C -0.567 4.567 17 H 0.088 0.912 18 C -0.181 4.181 19 N -0.558 5.558 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.214 1.214 23 H -0.193 1.193 24 C -0.013 4.013 25 C -0.096 4.096 26 C -0.144 4.144 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.267 0.733 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.783 11.835 4.469 25.190 hybrid contribution 0.682 -1.062 -0.036 1.263 sum -21.101 10.772 4.432 24.103 Atomic orbital electron populations 1.21047 0.89057 1.04083 1.03980 1.23820 0.98382 0.96936 0.90085 1.21450 0.90011 0.99021 1.09983 1.20903 1.00533 0.91768 1.03788 1.19199 0.89336 0.82910 0.74893 1.90836 1.71174 1.32921 1.51177 1.44454 1.02357 1.09643 1.74510 1.22448 0.80558 0.98422 0.95915 1.24807 0.91501 1.00364 0.97141 1.23576 0.89374 1.02493 1.01847 1.18344 0.86441 0.81498 0.75259 1.90616 1.71331 1.30626 1.53920 1.49893 1.10759 1.06217 1.70041 1.23386 1.00823 0.76128 1.00290 1.20263 0.92162 0.91999 0.95004 1.21188 1.22486 0.91835 1.21170 0.91150 1.25825 0.95580 1.02228 0.94516 1.70069 1.33313 1.25767 1.26621 0.85568 0.79067 0.78203 0.78595 1.19239 1.21377 1.19268 1.23267 0.81871 0.95137 1.01064 1.23879 0.87539 0.93343 1.04811 1.24369 0.92291 1.00212 0.97511 0.88828 0.89126 0.90892 0.88240 0.89640 0.88992 0.90595 0.73275 0.88580 0.92006 0.90476 0.93368 0.94267 0.92698 0.91831 0.89310 0.88234 0.87686 0.92312 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.91 71.24 0.63 -0.40 16 2 C -0.07 -1.21 9.84 24.52 0.24 -0.97 16 3 C -0.20 -3.41 6.00 -18.70 -0.11 -3.52 16 4 C -0.11 -0.85 9.14 71.23 0.65 -0.20 16 5 C 0.55 13.81 7.75 86.57 0.67 14.48 16 6 O -0.58 -21.03 16.10 -4.07 -0.07 -21.10 16 7 N -0.66 -13.27 5.66 -478.37 -2.71 -15.97 16 8 C 0.12 2.95 3.79 -7.14 -0.03 2.92 16 9 C -0.10 -2.97 7.88 31.90 0.25 -2.72 16 10 C -0.17 -5.58 3.33 -62.86 -0.21 -5.79 16 11 C 0.59 24.50 8.19 87.66 0.72 25.21 16 12 O -0.58 -26.54 17.87 -3.03 -0.05 -26.59 16 13 N -0.64 -27.53 3.69 -857.84 -3.16 -30.69 16 14 C 0.12 5.33 7.99 83.27 0.67 5.99 16 15 C 0.03 1.24 3.80 -11.13 -0.04 1.20 16 16 C -0.53 -27.68 8.82 25.60 0.23 -27.46 16 17 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 18 C 0.02 1.01 5.46 84.65 0.46 1.47 16 19 N -0.92 -52.67 13.26 21.45 0.28 -52.39 16 20 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 C 0.11 4.68 8.17 83.17 0.68 5.36 16 25 C -0.06 -1.35 7.78 30.61 0.24 -1.11 16 26 C -0.10 -3.35 7.76 31.09 0.24 -3.11 16 27 H 0.09 0.48 7.40 -2.38 -0.02 0.47 16 28 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.10 2.21 7.49 -2.91 -0.02 2.19 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.39 6.49 -2.39 -0.02 0.37 16 33 H 0.08 0.38 6.70 -2.39 -0.02 0.37 16 34 H 0.43 4.97 6.93 -92.71 -0.64 4.33 16 35 H 0.10 2.47 7.91 -2.39 -0.02 2.45 16 36 H 0.06 2.20 7.97 -2.39 -0.02 2.18 16 37 H 0.08 3.46 8.10 -2.38 -0.02 3.44 16 38 H 0.05 2.31 7.83 -2.39 -0.02 2.29 16 39 H 0.04 2.16 8.11 -2.38 -0.02 2.14 16 40 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 41 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.09 3.58 8.10 -2.39 -0.02 3.56 16 43 H 0.10 2.05 7.94 -2.39 -0.02 2.03 16 44 H 0.10 2.06 7.91 -2.39 -0.02 2.04 16 45 H 0.06 2.26 7.66 -2.39 -0.02 2.24 16 46 H 0.09 2.52 7.93 -2.39 -0.02 2.50 16 Total: -1.00 -72.43 385.17 1.96 -70.47 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.35 Total: 20.74 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 5.29 Total: 11.36 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -5.59 Total: -99.05 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.12 Total: -47.69 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -72.43 1.96 -70.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268886159.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.247 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds