Wall clock time and date at job start Tue Mar 31 2020 13:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.43203 * 179.97438 * 348.16307 * 3 2 1 5 5 O 1.21614 * 119.99860 * 98.51769 * 4 3 2 6 6 N 1.34775 * 120.00165 * 278.50815 * 4 3 2 7 7 C 1.46842 * 120.38032 * 359.72614 * 6 4 3 8 8 C 1.53799 * 108.57033 * 123.09200 * 7 6 4 9 9 C 1.53175 * 108.71669 * 51.51675 * 8 7 6 10 10 C 1.52839 * 117.66008 * 89.90040 * 9 8 7 11 11 C 1.52813 * 117.71861 * 158.76112 * 9 8 7 12 12 H 1.09001 * 117.49748 * 359.85929 * 11 9 8 13 13 C 1.50702 * 117.50339 * 144.90152 * 11 9 8 14 14 O 1.21273 * 120.00110 * 96.05315 * 13 11 9 15 15 N 1.34780 * 119.99599 * 276.04600 * 13 11 9 16 16 C 1.46502 * 119.99472 * 180.02562 * 15 13 11 17 17 C 1.52995 * 109.46991 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47412 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00107 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00316 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00146 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00339 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46953 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47381 * 119.99708 * 22 20 18 25 25 H 1.48503 * 109.47171 * 240.00232 * 22 20 18 26 26 C 1.53198 * 115.07612 * 304.42883 * 9 8 7 27 27 C 1.46841 * 120.38128 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.47217 * 273.32462 * 1 2 3 29 29 H 1.09004 * 109.46837 * 153.32455 * 1 2 3 30 30 H 1.08991 * 109.47333 * 33.32719 * 1 2 3 31 31 H 1.08995 * 109.58115 * 242.92528 * 7 6 4 32 32 H 1.09006 * 109.57887 * 3.32884 * 7 6 4 33 33 H 1.09002 * 109.71889 * 291.68185 * 8 7 6 34 34 H 1.09006 * 109.51342 * 171.22337 * 8 7 6 35 35 H 1.09002 * 117.50747 * 215.19235 * 10 9 8 36 36 H 1.08995 * 117.50476 * 0.24011 * 10 9 8 37 37 H 0.96993 * 120.00038 * 0.02562 * 15 13 11 38 38 H 1.09000 * 109.47555 * 300.00286 * 16 15 13 39 39 H 1.08999 * 109.47192 * 60.00143 * 16 15 13 40 40 H 1.09000 * 109.47563 * 300.00131 * 17 16 15 41 41 H 1.09008 * 109.47089 * 60.00174 * 17 16 15 42 42 H 0.96993 * 120.00244 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58217 * 295.66016 * 26 9 8 44 44 H 1.08998 * 109.58575 * 175.22630 * 26 9 8 45 45 H 1.09005 * 109.58013 * 356.67633 * 27 6 4 46 46 H 1.08996 * 109.57897 * 117.07946 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0005 0.0001 5 8 4.6861 0.1565 -1.0414 6 7 4.7518 -0.1721 1.1545 7 6 4.0260 -0.3550 2.4178 8 6 4.4708 -1.6845 3.0503 9 6 6.0011 -1.7114 3.1128 10 6 6.6698 -1.1514 4.3678 11 6 6.6549 -2.6608 4.1160 12 1 5.9964 -3.2682 4.7369 13 6 7.9530 -3.3121 3.7137 14 8 9.0084 -2.8265 4.0616 15 7 7.9409 -4.4343 2.9674 16 6 9.2029 -5.0678 2.5768 17 6 8.9100 -6.3147 1.7401 18 6 10.2080 -6.9667 1.3388 19 1 11.1479 -6.5347 1.6492 20 6 10.1958 -8.1142 0.5746 21 7 9.0513 -8.6402 0.1962 22 14 11.8048 -8.9228 0.0778 23 1 12.9418 -8.1418 0.6278 24 1 11.8499 -10.3067 0.6147 25 1 11.9018 -8.9631 -1.4035 26 6 6.7096 -1.4936 1.7721 27 6 6.2202 -0.1730 1.1644 28 1 -0.3634 0.0596 1.0259 29 1 -0.3633 -0.9183 -0.4614 30 1 -0.3633 0.8586 -0.5646 31 1 4.2555 0.4688 3.0936 32 1 2.9539 -0.3821 2.2226 33 1 4.1151 -2.5175 2.4438 34 1 4.0625 -1.7630 4.0579 35 1 7.6185 -0.6295 4.2425 36 1 6.0213 -0.7659 5.1544 37 1 7.0968 -4.8225 2.6890 38 1 9.7946 -4.3666 1.9884 39 1 9.7587 -5.3517 3.4704 40 1 8.3181 -7.0161 2.3281 41 1 8.3543 -6.0304 0.8465 42 1 9.0426 -9.4476 -0.3411 43 1 6.4745 -2.3162 1.0967 44 1 7.7867 -1.4453 1.9317 45 1 6.5924 -0.0802 0.1440 46 1 6.5819 0.6618 1.7646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269203258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:51 Heat of formation + Delta-G solvation = -9.421951 kcal Electronic energy + Delta-G solvation = -25999.003315 eV Core-core repulsion = 22276.249118 eV Total energy + Delta-G solvation = -3722.754198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78055 -39.64968 -37.90984 -35.57066 -34.80850 -34.61971 -32.82027 -31.69597 -30.49893 -29.62883 -29.00146 -25.43113 -24.76809 -23.95355 -23.32284 -21.92844 -20.91216 -19.88954 -19.28288 -17.98886 -17.03519 -16.62141 -16.31780 -15.67906 -15.50178 -15.32484 -15.12997 -14.63042 -14.42422 -14.35203 -14.20256 -14.14568 -13.99854 -13.74779 -13.35301 -13.20658 -12.75869 -12.55205 -12.34184 -12.17008 -11.85490 -11.52990 -11.20669 -11.06191 -11.05553 -10.82712 -10.66880 -10.64528 -10.38949 -10.34555 -10.29798 -10.14383 -9.76963 -9.46218 -9.18523 -8.91860 -8.55129 -8.36148 -6.09729 -4.12567 1.27494 1.94451 2.65469 2.84074 3.24377 3.28374 3.35747 3.40046 3.46661 3.69424 3.72283 4.32929 4.40166 4.44618 4.52082 4.68299 4.73512 4.90714 4.94334 4.98798 5.01238 5.08314 5.19433 5.23969 5.27434 5.27539 5.34444 5.39864 5.52152 5.59779 5.61889 5.78334 5.86806 5.99253 6.04918 6.21628 6.33339 6.33598 6.72499 6.89994 6.91179 6.99272 7.51248 7.60833 7.78960 7.88494 8.01533 8.27304 8.64676 8.93702 9.52449 11.01905 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.002647 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.239607 B =10574.268093 C =11734.139383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.087 4.087 3 C -0.224 4.224 4 C 0.632 3.368 5 O -0.523 6.523 6 N -0.599 5.599 7 C 0.112 3.888 8 C -0.097 4.097 9 C -0.106 4.106 10 C -0.138 4.138 11 C -0.176 4.176 12 H 0.126 0.874 13 C 0.535 3.465 14 O -0.550 6.550 15 N -0.716 5.716 16 C 0.121 3.879 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.102 4.102 27 C 0.119 3.881 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.398 0.602 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.261 0.739 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.280 18.710 6.483 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.090 4.090 3 C -0.227 4.227 4 C 0.420 3.580 5 O -0.401 6.401 6 N -0.331 5.331 7 C -0.011 4.011 8 C -0.135 4.135 9 C -0.107 4.107 10 C -0.175 4.175 11 C -0.197 4.197 12 H 0.144 0.856 13 C 0.320 3.680 14 O -0.429 6.429 15 N -0.365 5.365 16 C -0.001 4.001 17 C -0.025 4.025 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.141 4.141 27 C -0.003 4.003 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.231 0.769 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.118 0.882 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.205 18.974 6.070 26.987 hybrid contribution 0.348 -0.972 -0.302 1.076 sum -17.857 18.002 5.768 26.004 Atomic orbital electron populations 1.19133 0.83464 1.04206 1.04026 1.22714 0.93848 0.94069 0.98323 1.20621 0.92494 1.06088 1.03496 1.14803 0.82701 0.76870 0.83602 1.90866 1.68652 1.49348 1.31216 1.47868 1.07352 1.71051 1.06872 1.21832 0.96645 0.97797 0.84782 1.21650 0.92520 0.97683 1.01689 1.21472 0.94304 1.03216 0.91666 1.23070 1.02686 0.93688 0.98048 1.22410 0.98245 0.94360 1.04665 0.85585 1.19544 0.89323 0.80800 0.78289 1.90673 1.32517 1.64099 1.55577 1.46299 1.11241 1.26514 1.52463 1.21729 0.83585 0.95878 0.98880 1.19320 0.98028 0.90539 0.94576 1.21085 0.92434 1.09611 1.32830 0.92211 1.25002 0.96505 0.97011 0.95805 1.69964 1.24917 1.21321 1.37077 0.86463 0.83629 0.79227 0.78289 1.19579 1.20937 1.20903 1.21614 1.00212 0.97910 0.94317 1.21662 0.77644 0.97606 1.03363 0.89132 0.88909 0.89116 0.90560 0.89560 0.90446 0.90015 0.87641 0.88079 0.76867 0.92586 0.92597 0.95999 0.95940 0.92894 0.90300 0.89718 0.88245 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.18 10.32 34.37 0.35 0.17 16 2 C -0.09 -0.71 14.06 -37.12 -0.52 -1.24 16 3 C -0.22 -2.45 11.55 -38.84 -0.45 -2.90 16 4 C 0.63 8.18 7.54 -14.33 -0.11 8.07 16 5 O -0.52 -8.75 16.46 5.27 0.09 -8.66 16 6 N -0.60 -6.22 2.91 -175.28 -0.51 -6.73 16 7 C 0.11 0.81 6.37 -3.44 -0.02 0.79 16 8 C -0.10 -0.72 5.85 -26.22 -0.15 -0.87 16 9 C -0.11 -1.02 1.94 -154.49 -0.30 -1.32 16 10 C -0.14 -1.34 9.45 -26.80 -0.25 -1.59 16 11 C -0.18 -2.02 5.90 -91.85 -0.54 -2.56 16 12 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 13 C 0.54 8.77 6.09 -10.98 -0.07 8.71 16 14 O -0.55 -11.13 16.61 5.56 0.09 -11.04 16 15 N -0.72 -12.33 5.56 -60.30 -0.33 -12.66 16 16 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.10 -1.18 5.24 -26.43 -0.14 -1.31 16 27 C 0.12 1.26 6.44 -3.66 -0.02 1.24 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.55 6.25 -51.93 -0.32 0.22 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.11 1.19 7.93 -51.93 -0.41 0.78 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 6.06 8.47 -40.82 -0.35 5.72 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.11 7.36 -51.93 -0.38 0.73 16 45 H 0.10 1.20 6.96 -51.93 -0.36 0.84 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -35.20 388.66 -9.18 -44.38 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.28 Total: 1.24 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.80 Total: -3.36 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.11 Total: -44.94 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: 0.18 Total: -19.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.20 -9.18 -44.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269203258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.956 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds