Wall clock time and date at job start Tue Mar 31 2020 13:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47204 * 1 3 3 C 1.17394 * 179.97438 * 2 1 4 4 C 1.43203 * 179.97438 * 348.16307 * 3 2 1 5 5 O 1.21614 * 119.99860 * 98.51769 * 4 3 2 6 6 N 1.34775 * 120.00165 * 278.50815 * 4 3 2 7 7 C 1.46842 * 120.38032 * 359.72614 * 6 4 3 8 8 C 1.53799 * 108.57033 * 123.09200 * 7 6 4 9 9 C 1.53175 * 108.71669 * 51.51675 * 8 7 6 10 10 C 1.52839 * 117.66008 * 89.90040 * 9 8 7 11 11 C 1.52813 * 117.71861 * 158.76112 * 9 8 7 12 12 H 1.09001 * 117.49748 * 359.85929 * 11 9 8 13 13 C 1.50702 * 117.50339 * 144.90152 * 11 9 8 14 14 O 1.21273 * 120.00110 * 96.05315 * 13 11 9 15 15 N 1.34780 * 119.99599 * 276.04600 * 13 11 9 16 16 C 1.46502 * 119.99472 * 180.02562 * 15 13 11 17 17 C 1.52995 * 109.46991 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47412 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00107 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00316 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00146 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00339 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46953 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47381 * 119.99708 * 22 20 18 25 25 H 1.48503 * 109.47171 * 240.00232 * 22 20 18 26 26 C 1.53198 * 115.07612 * 304.42883 * 9 8 7 27 27 C 1.46841 * 120.38128 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.47217 * 273.32462 * 1 2 3 29 29 H 1.09004 * 109.46837 * 153.32455 * 1 2 3 30 30 H 1.08991 * 109.47333 * 33.32719 * 1 2 3 31 31 H 1.08995 * 109.58115 * 242.92528 * 7 6 4 32 32 H 1.09006 * 109.57887 * 3.32884 * 7 6 4 33 33 H 1.09002 * 109.71889 * 291.68185 * 8 7 6 34 34 H 1.09006 * 109.51342 * 171.22337 * 8 7 6 35 35 H 1.09002 * 117.50747 * 215.19235 * 10 9 8 36 36 H 1.08995 * 117.50476 * 0.24011 * 10 9 8 37 37 H 0.96993 * 120.00038 * 0.02562 * 15 13 11 38 38 H 1.09000 * 109.47555 * 300.00286 * 16 15 13 39 39 H 1.08999 * 109.47192 * 60.00143 * 16 15 13 40 40 H 1.09000 * 109.47563 * 300.00131 * 17 16 15 41 41 H 1.09008 * 109.47089 * 60.00174 * 17 16 15 42 42 H 0.96993 * 120.00244 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58217 * 295.66016 * 26 9 8 44 44 H 1.08998 * 109.58575 * 175.22630 * 26 9 8 45 45 H 1.09005 * 109.58013 * 356.67633 * 27 6 4 46 46 H 1.08996 * 109.57897 * 117.07946 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0005 0.0001 5 8 4.6861 0.1565 -1.0414 6 7 4.7518 -0.1721 1.1545 7 6 4.0260 -0.3550 2.4178 8 6 4.4708 -1.6845 3.0503 9 6 6.0011 -1.7114 3.1128 10 6 6.6698 -1.1514 4.3678 11 6 6.6549 -2.6608 4.1160 12 1 5.9964 -3.2682 4.7369 13 6 7.9530 -3.3121 3.7137 14 8 9.0084 -2.8265 4.0616 15 7 7.9409 -4.4343 2.9674 16 6 9.2029 -5.0678 2.5768 17 6 8.9100 -6.3147 1.7401 18 6 10.2080 -6.9667 1.3388 19 1 11.1479 -6.5347 1.6492 20 6 10.1958 -8.1142 0.5746 21 7 9.0513 -8.6402 0.1962 22 14 11.8048 -8.9228 0.0778 23 1 12.9418 -8.1418 0.6278 24 1 11.8499 -10.3067 0.6147 25 1 11.9018 -8.9631 -1.4035 26 6 6.7096 -1.4936 1.7721 27 6 6.2202 -0.1730 1.1644 28 1 -0.3634 0.0596 1.0259 29 1 -0.3633 -0.9183 -0.4614 30 1 -0.3633 0.8586 -0.5646 31 1 4.2555 0.4688 3.0936 32 1 2.9539 -0.3821 2.2226 33 1 4.1151 -2.5175 2.4438 34 1 4.0625 -1.7630 4.0579 35 1 7.6185 -0.6295 4.2425 36 1 6.0213 -0.7659 5.1544 37 1 7.0968 -4.8225 2.6890 38 1 9.7946 -4.3666 1.9884 39 1 9.7587 -5.3517 3.4704 40 1 8.3181 -7.0161 2.3281 41 1 8.3543 -6.0304 0.8465 42 1 9.0426 -9.4476 -0.3411 43 1 6.4745 -2.3162 1.0967 44 1 7.7867 -1.4453 1.9317 45 1 6.5924 -0.0802 0.1440 46 1 6.5819 0.6618 1.7646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269203258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:50 Heat of formation + Delta-G solvation = -32.495851 kcal Electronic energy + Delta-G solvation = -26000.003875 eV Core-core repulsion = 22276.249118 eV Total energy + Delta-G solvation = -3723.754757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72354 -40.79660 -39.02732 -36.73278 -36.31946 -35.24970 -34.82295 -32.47112 -31.73776 -31.06370 -29.53592 -27.21667 -25.59200 -24.87062 -24.56526 -22.79587 -22.68324 -21.10747 -20.19155 -18.85522 -18.58259 -18.04654 -17.53569 -16.71214 -16.62617 -16.51785 -16.44127 -16.09411 -15.71290 -15.23386 -15.08268 -14.92903 -14.56956 -14.50551 -14.41305 -14.33743 -14.09471 -14.02941 -13.35629 -13.25631 -13.02940 -12.98117 -12.73188 -12.55018 -12.29974 -12.27502 -11.86627 -11.70763 -11.66389 -11.48871 -11.30601 -11.20002 -11.11230 -10.97470 -10.71796 -10.64326 -10.03864 -9.76951 -8.27509 -6.38229 0.48288 1.25665 1.38261 1.39112 1.52355 1.57134 1.89185 2.20811 2.41335 2.43702 2.70928 3.07136 3.08423 3.51133 3.59354 3.72029 3.83153 3.96594 4.05927 4.21307 4.27428 4.41295 4.43997 4.49605 4.52820 4.55380 4.63400 4.71785 4.80581 4.81488 4.82592 4.86820 4.92744 4.94162 5.04626 5.07974 5.17346 5.26232 5.27638 5.40895 5.46751 5.53603 5.75270 6.12642 6.16797 6.26538 6.62151 6.75241 6.88969 7.27555 7.31343 8.84600 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013253 B = 0.002647 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.239607 B =10574.268093 C =11734.139383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.042 4.042 3 C -0.289 4.289 4 C 0.625 3.375 5 O -0.582 6.582 6 N -0.594 5.594 7 C 0.109 3.891 8 C -0.090 4.090 9 C -0.095 4.095 10 C -0.122 4.122 11 C -0.185 4.185 12 H 0.157 0.843 13 C 0.534 3.466 14 O -0.592 6.592 15 N -0.714 5.714 16 C 0.141 3.859 17 C 0.024 3.976 18 C -0.547 4.547 19 H 0.058 0.942 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.277 1.277 26 C -0.100 4.100 27 C 0.123 3.877 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.409 0.591 38 H 0.042 0.958 39 H 0.046 0.954 40 H 0.009 0.991 41 H 0.005 0.995 42 H 0.266 0.734 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.914 19.420 8.356 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.292 4.292 4 C 0.415 3.585 5 O -0.464 6.464 6 N -0.325 5.325 7 C -0.012 4.012 8 C -0.127 4.127 9 C -0.096 4.096 10 C -0.159 4.159 11 C -0.206 4.206 12 H 0.175 0.825 13 C 0.322 3.678 14 O -0.473 6.473 15 N -0.364 5.364 16 C 0.017 3.983 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.076 0.924 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.203 1.203 26 C -0.138 4.138 27 C 0.000 4.000 28 H 0.136 0.864 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.159 0.841 37 H 0.244 0.756 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.880 19.685 7.991 29.788 hybrid contribution 1.083 -1.169 -0.883 1.822 sum -19.797 18.515 7.109 28.022 Atomic orbital electron populations 1.19539 0.79940 1.05568 1.06229 1.23696 0.94685 0.90781 0.95286 1.20439 0.92454 1.09413 1.06913 1.15187 0.83824 0.76059 0.83388 1.90816 1.70010 1.52349 1.33201 1.47984 1.07101 1.69749 1.07617 1.22129 0.97157 0.98584 0.83360 1.21688 0.90087 0.97350 1.03622 1.21487 0.95827 1.02039 0.90257 1.23204 1.02430 0.91678 0.98583 1.22415 0.96078 0.95599 1.06463 0.82519 1.20414 0.90870 0.79767 0.76775 1.90649 1.34743 1.64932 1.56958 1.46151 1.10195 1.27099 1.52931 1.21193 0.85223 0.94305 0.97559 1.19112 0.96643 0.91510 0.94043 1.21493 0.93413 1.10305 1.33308 0.92374 1.25891 1.00157 0.97570 0.95631 1.70064 1.27060 1.21865 1.37617 0.85390 0.79258 0.78322 0.78043 1.18970 1.19986 1.20259 1.21495 0.99139 0.97614 0.95546 1.21552 0.78376 0.97754 1.02269 0.86351 0.87427 0.87401 0.88189 0.88144 0.91289 0.86373 0.89597 0.84103 0.75611 0.93957 0.93546 0.97269 0.97698 0.92505 0.92552 0.92035 0.90710 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.17 10.32 70.18 0.72 0.56 16 2 C -0.04 -0.59 14.06 31.13 0.44 -0.15 16 3 C -0.29 -6.20 11.55 30.02 0.35 -5.85 16 4 C 0.62 16.91 7.54 85.49 0.64 17.56 16 5 O -0.58 -21.12 16.46 -4.07 -0.07 -21.19 16 6 N -0.59 -12.27 2.91 -826.73 -2.41 -14.68 16 7 C 0.11 1.27 6.37 86.58 0.55 1.82 16 8 C -0.09 -1.02 5.85 30.92 0.18 -0.84 16 9 C -0.10 -1.67 1.94 -52.17 -0.10 -1.77 16 10 C -0.12 -2.02 9.45 30.55 0.29 -1.73 16 11 C -0.18 -3.87 5.90 -11.59 -0.07 -3.94 16 12 H 0.16 2.39 8.14 -2.39 -0.02 2.37 16 13 C 0.53 17.61 6.09 87.66 0.53 18.14 16 14 O -0.59 -24.50 16.61 -3.01 -0.05 -24.55 16 15 N -0.71 -25.24 5.56 -463.07 -2.57 -27.82 16 16 C 0.14 6.25 5.61 86.38 0.48 6.73 16 17 C 0.02 1.26 5.09 29.85 0.15 1.41 16 18 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.01 0.36 5.46 84.65 0.46 0.82 16 21 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16 22 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 C -0.10 -2.39 5.24 30.79 0.16 -2.23 16 27 C 0.12 2.73 6.44 86.44 0.56 3.28 16 28 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 29 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.95 6.25 -2.38 -0.01 0.94 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.12 0.59 8.10 -2.38 -0.02 0.57 16 35 H 0.09 1.83 7.93 -2.39 -0.02 1.81 16 36 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.41 12.69 8.47 -92.71 -0.79 11.90 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 42 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 1.74 7.36 -2.39 -0.02 1.73 16 45 H 0.07 2.04 6.96 -2.38 -0.02 2.02 16 46 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -81.74 388.66 3.00 -78.74 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.20 Total: 15.16 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 5.59 Total: 2.80 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.70 Total: -97.47 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.12 Total: -45.74 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -81.74 3.00 -78.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269203258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.241 kcal (2) G-P(sol) polarization free energy of solvation -81.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds