Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.43198 * 179.97438 * 173.63516 * 3 2 1 5 5 O 1.21613 * 120.00230 * 52.54077 * 4 3 2 6 6 N 1.34780 * 119.99915 * 232.26259 * 4 3 2 7 7 C 1.46839 * 120.38073 * 359.72418 * 6 4 3 8 8 C 1.53793 * 108.57369 * 123.09539 * 7 6 4 9 9 C 1.53176 * 108.71821 * 51.51379 * 8 7 6 10 10 C 1.52846 * 117.66054 * 89.90356 * 9 8 7 11 11 C 1.52821 * 117.71892 * 158.76242 * 9 8 7 12 12 H 1.08996 * 117.50176 * 144.89876 * 11 9 8 13 13 C 1.50701 * 117.49900 * 359.88868 * 11 9 8 14 14 O 1.21276 * 120.00062 * 263.95646 * 13 11 9 15 15 N 1.34772 * 119.99857 * 83.94866 * 13 11 9 16 16 C 1.46507 * 119.99968 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.46996 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.46885 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99733 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00128 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99892 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00164 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47184 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47372 * 120.00433 * 22 20 18 25 25 H 1.48510 * 109.47116 * 240.00222 * 22 20 18 26 26 C 1.53190 * 115.07339 * 304.43072 * 9 8 7 27 27 C 1.46844 * 120.38151 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.46910 * 313.83035 * 1 2 3 29 29 H 1.08998 * 109.46710 * 73.82245 * 1 2 3 30 30 H 1.08994 * 109.47239 * 193.82427 * 1 2 3 31 31 H 1.08998 * 109.58114 * 242.92836 * 7 6 4 32 32 H 1.09006 * 109.57953 * 3.32509 * 7 6 4 33 33 H 1.09006 * 109.71668 * 291.68256 * 8 7 6 34 34 H 1.09003 * 109.51406 * 171.22450 * 8 7 6 35 35 H 1.08995 * 117.50650 * 215.19500 * 10 9 8 36 36 H 1.09005 * 117.49655 * 0.23749 * 10 9 8 37 37 H 0.97001 * 120.00138 * 0.02562 * 15 13 11 38 38 H 1.08996 * 109.47204 * 300.00969 * 16 15 13 39 39 H 1.09003 * 109.46442 * 60.00573 * 16 15 13 40 40 H 1.08997 * 109.47000 * 300.00238 * 17 16 15 41 41 H 1.08997 * 109.47077 * 60.00493 * 17 16 15 42 42 H 0.97006 * 119.99854 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.58847 * 295.65680 * 26 9 8 44 44 H 1.09002 * 109.70200 * 175.29464 * 26 9 8 45 45 H 1.09000 * 109.58005 * 356.66895 * 27 6 4 46 46 H 1.08995 * 109.58396 * 116.94003 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0018 -0.0001 5 8 4.6866 -0.6382 -0.8361 6 7 4.7513 0.7168 0.9230 7 6 4.0249 1.5022 1.9288 8 6 4.4702 1.0401 3.3264 9 6 6.0004 1.0679 3.3890 10 6 6.6682 2.3623 3.8524 11 6 6.6543 1.1366 4.7685 12 1 7.5935 0.6014 4.9076 13 6 5.7439 1.1747 5.9689 14 8 5.4504 2.2375 6.4739 15 7 5.2559 0.0276 6.4811 16 6 4.3713 0.0645 7.6485 17 6 3.9636 -1.3614 8.0247 18 6 3.0532 -1.3233 9.2250 19 1 2.7914 -0.3767 9.6743 20 6 2.5539 -2.4967 9.7490 21 7 2.8724 -3.6493 9.2015 22 14 1.4260 -2.4496 11.2373 23 1 1.2241 -1.0407 11.6610 24 1 0.1156 -3.0526 10.8847 25 1 2.0413 -3.2181 12.3492 26 6 6.7094 0.2507 2.3045 27 6 6.2197 0.7246 0.9303 28 1 -0.3633 0.7117 0.7414 29 1 -0.3633 0.2863 -0.9870 30 1 -0.3633 -0.9978 0.2455 31 1 4.2535 2.5603 1.8009 32 1 2.9529 1.3416 1.8133 33 1 4.1153 0.0257 3.5087 34 1 4.0613 1.7134 4.0799 35 1 7.6166 2.6335 3.3887 36 1 6.0188 3.1966 4.1178 37 1 5.4909 -0.8225 6.0774 38 1 4.8944 0.5256 8.4862 39 1 3.4809 0.6468 7.4112 40 1 3.4407 -1.8227 7.1869 41 1 4.8542 -1.9433 8.2620 42 1 2.5213 -4.4750 9.5704 43 1 6.4753 -0.8062 2.4317 44 1 7.7869 0.3979 2.3789 45 1 6.5924 0.0520 0.1577 46 1 6.5806 1.7352 0.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269203259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -31.744532 kcal Electronic energy + Delta-G solvation = -26122.029433 eV Core-core repulsion = 22398.307255 eV Total energy + Delta-G solvation = -3723.722177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71854 -40.79266 -39.01354 -36.71696 -36.31327 -35.27079 -34.80444 -32.45562 -31.68077 -31.11738 -29.56891 -27.20198 -25.57988 -24.84294 -24.58687 -22.81625 -22.68235 -21.05420 -20.19500 -18.91283 -18.54027 -17.85673 -17.72441 -16.70109 -16.58696 -16.50833 -16.42935 -16.11265 -15.69676 -15.19647 -15.07296 -14.97764 -14.60722 -14.50652 -14.40943 -14.31021 -14.12599 -14.06627 -13.33663 -13.23685 -12.99974 -12.96582 -12.73175 -12.52906 -12.28837 -12.26267 -11.86991 -11.72412 -11.64662 -11.47452 -11.34172 -11.21109 -11.07127 -11.01411 -10.71181 -10.62651 -10.02108 -9.76742 -8.25626 -6.36422 0.45317 1.22497 1.39938 1.41112 1.54094 1.57824 1.90430 2.21738 2.40416 2.43530 2.70821 3.03164 3.09243 3.51902 3.58711 3.71913 3.83755 3.96584 4.07171 4.22173 4.25142 4.38389 4.46386 4.50904 4.51834 4.55239 4.66606 4.74436 4.75539 4.76125 4.82860 4.86837 4.91899 4.95635 5.00251 5.05775 5.17172 5.26370 5.29207 5.42723 5.48443 5.55633 5.77115 6.11495 6.14382 6.22904 6.63111 6.77226 6.87595 7.28310 7.33356 8.86321 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.003038 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.358032 B = 9215.202294 C =10933.510079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.051 4.051 3 C -0.291 4.291 4 C 0.630 3.370 5 O -0.572 6.572 6 N -0.593 5.593 7 C 0.119 3.881 8 C -0.101 4.101 9 C -0.095 4.095 10 C -0.122 4.122 11 C -0.187 4.187 12 H 0.152 0.848 13 C 0.536 3.464 14 O -0.589 6.589 15 N -0.714 5.714 16 C 0.142 3.858 17 C 0.024 3.976 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.089 4.089 27 C 0.113 3.887 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.266 0.734 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.089 0.911 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.020 10.739 -19.648 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.294 4.294 4 C 0.420 3.580 5 O -0.454 6.454 6 N -0.324 5.324 7 C -0.003 4.003 8 C -0.139 4.139 9 C -0.096 4.096 10 C -0.159 4.159 11 C -0.207 4.207 12 H 0.170 0.830 13 C 0.324 3.676 14 O -0.471 6.471 15 N -0.364 5.364 16 C 0.018 3.982 17 C -0.014 4.014 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.203 1.203 26 C -0.127 4.127 27 C -0.008 4.008 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.109 0.891 37 H 0.243 0.757 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.129 10.988 -19.673 22.749 hybrid contribution -0.519 -0.909 1.012 1.456 sum 2.610 10.079 -18.661 21.369 Atomic orbital electron populations 1.19512 0.80363 1.05663 1.05895 1.23715 0.94871 0.92774 0.93983 1.20719 0.92992 1.08181 1.07467 1.15022 0.83362 0.78652 0.80969 1.90790 1.69676 1.45029 1.39884 1.47976 1.08074 1.46465 1.29890 1.21864 0.96849 0.96012 0.85600 1.21594 0.93588 1.01825 0.96931 1.21473 0.93993 1.01278 0.92832 1.23195 1.03663 0.90421 0.98587 1.22405 1.01383 1.08132 0.88807 0.83039 1.20313 0.79896 0.82971 0.84414 1.90649 1.61628 1.31393 1.63380 1.46161 1.48974 1.09518 1.31718 1.21198 0.91892 0.98726 0.86370 1.19116 0.95662 0.90744 0.95833 1.21489 1.29596 0.93231 1.14123 0.92312 1.25870 0.97979 0.94982 1.00300 1.70071 1.45888 0.98213 1.42447 0.85401 0.78387 0.78542 0.78752 1.18884 1.20150 1.20282 1.21577 1.01138 0.98796 0.91166 1.21826 0.77047 1.03835 0.98086 0.87129 0.86893 0.87595 0.88504 0.89459 0.92117 0.91493 0.84638 0.89088 0.75672 0.93730 0.93569 0.97502 0.97540 0.92556 0.91683 0.86935 0.89297 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 10.32 70.18 0.72 0.23 16 2 C -0.05 -0.94 14.06 31.12 0.44 -0.51 16 3 C -0.29 -7.06 11.55 30.01 0.35 -6.71 16 4 C 0.63 16.85 7.54 85.49 0.64 17.50 16 5 O -0.57 -19.03 16.46 -4.07 -0.07 -19.10 16 6 N -0.59 -12.10 2.91 -826.73 -2.41 -14.51 16 7 C 0.12 2.10 6.37 86.58 0.55 2.66 16 8 C -0.10 -2.12 5.25 30.92 0.16 -1.96 16 9 C -0.10 -1.66 1.94 -52.17 -0.10 -1.76 16 10 C -0.12 -2.01 9.46 30.55 0.29 -1.72 16 11 C -0.19 -3.91 5.90 -11.59 -0.07 -3.98 16 12 H 0.15 2.48 8.14 -2.39 -0.02 2.46 16 13 C 0.54 17.09 6.09 87.66 0.53 17.62 16 14 O -0.59 -23.49 16.61 -3.02 -0.05 -23.54 16 15 N -0.71 -24.34 5.56 -463.05 -2.57 -26.91 16 16 C 0.14 6.05 5.61 86.38 0.48 6.53 16 17 C 0.02 1.20 5.09 29.85 0.15 1.35 16 18 C -0.55 -30.36 9.11 25.60 0.23 -30.12 16 19 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 20 C 0.01 0.42 5.46 84.65 0.46 0.88 16 21 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 22 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 26 C -0.09 -1.26 5.83 30.79 0.18 -1.08 16 27 C 0.11 1.78 6.44 86.44 0.56 2.34 16 28 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.56 6.25 -2.38 -0.01 1.54 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.07 1.64 7.36 -2.39 -0.02 1.62 16 35 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 1.84 7.93 -2.38 -0.02 1.82 16 37 H 0.41 12.33 8.47 -92.71 -0.79 11.55 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.11 0.99 8.11 -2.39 -0.02 0.97 16 45 H 0.09 1.63 6.96 -2.39 -0.02 1.61 16 46 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -76.59 388.67 3.00 -73.59 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.20 Total: 17.79 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.59 Total: 1.27 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.70 Total: -95.33 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.12 Total: -42.64 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -76.59 3.00 -73.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269203259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.846 kcal (2) G-P(sol) polarization free energy of solvation -76.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds