Wall clock time and date at job start Tue Mar 31 2020 13:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.43198 * 179.97438 * 173.88673 * 3 2 1 5 5 O 1.21618 * 120.00214 * 337.33065 * 4 3 2 6 6 N 1.34780 * 120.00167 * 157.32941 * 4 3 2 7 7 C 1.47137 * 120.64591 * 5.18583 * 6 4 3 8 8 C 1.53194 * 108.64573 * 232.16477 * 7 6 4 9 9 C 1.53046 * 109.48984 * 304.75491 * 8 7 6 10 10 C 1.53208 * 109.47101 * 61.91597 * 9 8 7 11 11 C 1.45963 * 120.64805 * 185.21081 * 6 4 3 12 12 C 1.53828 * 110.77262 * 5.29915 * 11 6 4 13 13 C 1.51468 * 104.08469 * 265.50873 * 12 11 6 14 14 O 1.21287 * 124.94319 * 164.63696 * 13 12 11 15 15 N 1.34515 * 110.11369 * 344.75769 * 13 12 11 16 16 C 1.46494 * 124.35080 * 179.49077 * 15 13 12 17 17 C 1.52995 * 109.47237 * 269.70026 * 16 15 13 18 18 C 1.50707 * 109.46955 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99692 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99529 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00009 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47405 * 269.99960 * 22 20 18 24 24 H 1.48501 * 109.47443 * 30.00243 * 22 20 18 25 25 H 1.48505 * 109.46907 * 150.00441 * 22 20 18 26 26 C 1.46948 * 111.29228 * 359.23002 * 15 13 12 27 27 H 1.09002 * 109.47392 * 208.78629 * 1 2 3 28 28 H 1.09000 * 109.47383 * 328.78012 * 1 2 3 29 29 H 1.08999 * 109.47260 * 88.78664 * 1 2 3 30 30 H 1.09002 * 109.61242 * 351.91513 * 7 6 4 31 31 H 1.09002 * 109.60962 * 112.24469 * 7 6 4 32 32 H 1.08991 * 109.47165 * 64.75960 * 8 7 6 33 33 H 1.09002 * 109.46948 * 184.75146 * 8 7 6 34 34 H 1.08998 * 109.47480 * 181.92057 * 9 8 7 35 35 H 1.09005 * 109.47013 * 301.91446 * 9 8 7 36 36 H 1.08996 * 109.49156 * 180.16186 * 10 9 8 37 37 H 1.08994 * 109.49070 * 60.09167 * 10 9 8 38 38 H 1.09003 * 110.51693 * 24.34125 * 12 11 6 39 39 H 1.08998 * 110.52036 * 146.93306 * 12 11 6 40 40 H 1.09008 * 109.46571 * 149.70262 * 16 15 13 41 41 H 1.08998 * 109.47463 * 29.70988 * 16 15 13 42 42 H 1.08995 * 109.47344 * 60.00713 * 17 16 15 43 43 H 1.09002 * 109.47544 * 300.00095 * 17 16 15 44 44 H 0.97004 * 119.99633 * 180.02562 * 21 20 18 45 45 H 1.08993 * 110.27971 * 135.52622 * 26 15 13 46 46 H 1.09000 * 110.27492 * 257.60642 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0779 0.0018 -0.0001 5 8 4.6870 -0.9695 0.4058 6 7 4.7509 1.0794 -0.4500 7 6 4.0330 2.3039 -0.8377 8 6 4.4787 2.7076 -2.2466 9 6 6.0022 2.8502 -2.2791 10 6 6.6485 1.5008 -1.9495 11 6 6.2059 1.0544 -0.5626 12 6 6.7542 -0.3460 -0.2389 13 6 7.1083 -0.2723 1.2319 14 8 7.3239 -1.2305 1.9434 15 7 7.1464 1.0106 1.6348 16 6 7.4480 1.4387 3.0029 17 6 6.1490 1.5334 3.8057 18 6 6.4593 1.9745 5.2130 19 1 7.4807 2.1683 5.5054 20 6 5.4390 2.1305 6.1273 21 7 5.7098 2.5159 7.3552 22 14 3.6723 1.7960 5.6214 23 1 3.0616 3.0452 5.1000 24 1 3.6491 0.7545 4.5630 25 1 2.9014 1.3223 6.7990 26 6 6.8526 1.9275 0.5247 27 1 -0.3634 -0.9007 0.4949 28 1 -0.3634 0.8788 0.5327 29 1 -0.3634 0.0218 -1.0274 30 1 2.9594 2.1154 -0.8336 31 1 4.2666 3.1031 -0.1343 32 1 4.1704 1.9421 -2.9586 33 1 4.0191 3.6590 -2.5145 34 1 6.3161 3.1706 -3.2725 35 1 6.3134 3.5916 -1.5431 36 1 7.7335 1.6027 -1.9697 37 1 6.3388 0.7597 -2.6862 38 1 5.9911 -1.1047 -0.4132 39 1 7.6428 -0.5555 -0.8344 40 1 7.9327 2.4148 2.9796 41 1 8.1132 0.7139 3.4722 42 1 5.6644 0.5574 3.8291 43 1 5.4838 2.2583 3.3365 44 1 4.9920 2.6254 7.9985 45 1 6.1586 2.7029 0.8487 46 1 7.7733 2.3757 0.1512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269203810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:06 Heat of formation + Delta-G solvation = -14.512667 kcal Electronic energy + Delta-G solvation = -28232.433395 eV Core-core repulsion = 24509.458447 eV Total energy + Delta-G solvation = -3722.974948 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.75257 -40.31338 -38.84520 -37.07223 -35.89085 -35.26317 -34.08967 -33.92133 -31.85439 -29.93495 -29.33231 -28.14984 -26.73290 -25.17699 -24.31243 -23.13516 -22.61817 -21.08856 -19.88414 -19.12819 -18.92866 -17.87007 -17.46023 -17.22907 -16.58298 -16.44509 -16.13292 -15.82874 -15.36056 -15.20034 -15.05679 -14.94200 -14.86654 -14.66702 -14.50137 -14.39947 -14.12369 -14.10633 -13.84895 -13.60681 -13.25609 -13.04844 -13.00941 -12.47115 -12.26881 -12.07133 -11.96747 -11.91769 -11.66530 -11.59887 -11.54533 -11.41598 -11.28224 -10.88903 -10.73244 -10.30584 -9.89448 -9.56471 -8.41686 -6.45674 0.38632 1.16258 1.16590 1.23636 1.36599 1.66577 1.78445 2.13550 2.23599 2.37996 2.92268 2.94304 3.29241 3.38817 3.64558 3.84099 3.98871 4.07487 4.19424 4.23240 4.29379 4.35353 4.39991 4.50343 4.53979 4.58293 4.68360 4.71408 4.72493 4.74898 4.89518 4.95072 4.95815 5.02676 5.05802 5.08208 5.16644 5.22120 5.27684 5.41306 5.50127 5.58812 5.70590 6.10674 6.13043 6.20693 6.25829 6.59476 6.89339 7.18270 7.25727 8.74691 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.005544 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.059334 B = 5049.309974 C = 6295.476956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.050 4.050 3 C -0.292 4.292 4 C 0.620 3.380 5 O -0.550 6.550 6 N -0.583 5.583 7 C 0.096 3.904 8 C -0.124 4.124 9 C -0.120 4.120 10 C -0.105 4.105 11 C 0.169 3.831 12 C -0.184 4.184 13 C 0.514 3.486 14 O -0.594 6.594 15 N -0.624 5.624 16 C 0.148 3.852 17 C -0.007 4.007 18 C -0.532 4.532 19 H 0.046 0.954 20 C 0.018 3.982 21 N -0.939 5.939 22 Si 0.942 3.058 23 H -0.248 1.248 24 H -0.283 1.283 25 H -0.275 1.275 26 C 0.090 3.910 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.048 0.952 42 H -0.018 1.018 43 H 0.020 0.980 44 H 0.270 0.730 45 H 0.083 0.917 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 5.145 -29.852 31.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 C -0.295 4.295 4 C 0.411 3.589 5 O -0.433 6.433 6 N -0.313 5.313 7 C -0.025 4.025 8 C -0.162 4.162 9 C -0.157 4.157 10 C -0.143 4.143 11 C 0.084 3.916 12 C -0.223 4.223 13 C 0.304 3.696 14 O -0.475 6.475 15 N -0.357 5.357 16 C 0.026 3.974 17 C -0.045 4.045 18 C -0.570 4.570 19 H 0.064 0.936 20 C -0.181 4.181 21 N -0.579 5.579 22 Si 0.766 3.234 23 H -0.172 1.172 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.033 4.033 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.141 0.859 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.168 0.832 39 H 0.141 0.859 40 H 0.115 0.885 41 H 0.067 0.933 42 H 0.000 1.000 43 H 0.038 0.962 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.571 4.295 -29.040 30.582 hybrid contribution -0.510 -0.583 1.162 1.397 sum -9.081 3.713 -27.878 29.554 Atomic orbital electron populations 1.19539 0.79873 1.05545 1.06226 1.23785 0.94882 0.94883 0.91694 1.20771 0.92898 1.07042 1.08818 1.15310 0.83690 0.82860 0.77000 1.90677 1.67349 1.37587 1.47690 1.47688 1.06665 1.13848 1.63103 1.22179 0.97173 0.84764 0.98349 1.21883 0.97159 1.03264 0.93899 1.21629 0.94276 0.95915 1.03925 1.21780 1.02646 0.99016 0.90895 1.20982 0.78515 0.94422 0.97650 1.23580 1.05772 1.01155 0.91764 1.21556 0.74332 0.82219 0.91456 1.90611 1.53002 1.41136 1.62728 1.48650 1.69567 1.07346 1.10151 1.21149 0.96805 1.00028 0.79403 1.19655 0.95491 0.94630 0.94756 1.21239 0.94795 1.45682 0.95294 0.93607 1.25802 1.03504 0.94088 0.94687 1.70021 1.34466 1.48407 1.04962 0.85788 0.80127 0.79461 0.77990 1.17172 1.20838 1.19968 1.22812 1.02174 0.92595 0.85717 0.88097 0.87088 0.85934 0.89342 0.90366 0.91205 0.87951 0.88569 0.90669 0.87588 0.89966 0.83249 0.85857 0.88495 0.93309 0.99958 0.96167 0.92092 0.89913 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.32 70.18 0.72 0.17 16 2 C -0.05 -1.09 14.07 31.13 0.44 -0.65 16 3 C -0.29 -8.54 11.59 30.02 0.35 -8.19 16 4 C 0.62 20.78 7.38 85.49 0.63 21.42 16 5 O -0.55 -23.47 11.90 -4.09 -0.05 -23.52 16 6 N -0.58 -14.40 2.69 -781.32 -2.10 -16.50 16 7 C 0.10 1.56 6.08 86.32 0.52 2.09 16 8 C -0.12 -1.08 6.05 30.67 0.19 -0.90 16 9 C -0.12 -0.90 5.79 30.68 0.18 -0.73 16 10 C -0.11 -1.23 4.69 30.42 0.14 -1.09 16 11 C 0.17 3.82 0.87 3.98 0.00 3.82 16 12 C -0.18 -5.66 5.37 30.37 0.16 -5.50 16 13 C 0.51 22.25 6.83 87.94 0.60 22.85 16 14 O -0.59 -32.61 17.59 -3.05 -0.05 -32.67 16 15 N -0.62 -24.21 2.94 -818.66 -2.41 -26.61 16 16 C 0.15 6.73 5.88 86.38 0.51 7.24 16 17 C -0.01 -0.37 4.37 29.85 0.13 -0.24 16 18 C -0.53 -32.88 9.66 25.60 0.25 -32.63 16 19 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 20 C 0.02 1.09 5.47 84.66 0.46 1.55 16 21 N -0.94 -60.60 13.96 21.45 0.30 -60.30 16 22 Si 0.94 48.32 27.47 68.60 1.88 50.20 16 23 H -0.25 -11.45 7.11 99.48 0.71 -10.75 16 24 H -0.28 -15.25 6.54 99.48 0.65 -14.60 16 25 H -0.27 -13.50 7.11 99.48 0.71 -12.80 16 26 C 0.09 2.27 5.92 86.53 0.51 2.78 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 1.41 6.33 -2.39 -0.02 1.39 16 31 H 0.08 1.26 7.42 -2.39 -0.02 1.25 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.07 0.56 7.65 -2.38 -0.02 0.54 16 36 H 0.11 0.86 7.94 -2.39 -0.02 0.84 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.15 5.41 4.51 -93.27 -0.42 4.99 16 39 H 0.12 2.91 7.87 -2.39 -0.02 2.90 16 40 H 0.10 3.83 8.14 -2.38 -0.02 3.81 16 41 H 0.05 2.46 7.92 -2.39 -0.02 2.44 16 42 H -0.02 -1.11 7.20 -2.39 -0.02 -1.13 16 43 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 44 H 0.27 16.13 8.31 -92.70 -0.77 15.36 16 45 H 0.08 2.07 7.13 -2.39 -0.02 2.05 16 46 H 0.12 2.09 7.73 -2.39 -0.02 2.07 16 Total: -1.00 -94.53 368.33 3.89 -90.64 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.52 Total: 6.78 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.80 Total: 11.98 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -4.21 Total: -103.41 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -0.10 Total: -56.19 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.88 Total: 50.20 kcal Total: -94.53 3.89 -90.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269203810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.126 kcal (2) G-P(sol) polarization free energy of solvation -94.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds