Wall clock time and date at job start Tue Mar 31 2020 13:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43207 * 179.97438 * 155.95589 * 3 2 1 5 5 O 1.21609 * 119.99638 * 205.88459 * 4 3 2 6 6 N 1.34774 * 120.00016 * 25.88336 * 4 3 2 7 7 C 1.46928 * 120.60249 * 179.97438 * 6 4 3 8 8 C 1.53261 * 108.73992 * 234.12339 * 7 6 4 9 9 C 1.52506 * 109.42409 * 306.20327 * 8 7 6 10 10 C 1.54205 * 109.96499 * 181.76745 * 9 8 7 11 11 C 1.54574 * 101.66346 * 143.24632 * 10 9 8 12 12 N 1.46817 * 105.48870 * 334.96213 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.90174 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.34565 * 111.27675 * 17.16565 * 12 11 10 24 24 O 1.21284 * 125.02159 * 179.08718 * 23 12 11 25 25 C 1.52504 * 110.83248 * 59.97195 * 9 8 7 26 26 C 1.46934 * 120.60214 * 359.97438 * 6 4 3 27 27 H 1.09004 * 109.46843 * 358.16341 * 1 2 3 28 28 H 1.08993 * 109.46680 * 118.16065 * 1 2 3 29 29 H 1.08997 * 109.46910 * 238.16148 * 1 2 3 30 30 H 1.09006 * 109.58961 * 114.34538 * 7 6 4 31 31 H 1.08994 * 109.71316 * 353.97537 * 7 6 4 32 32 H 1.08996 * 109.48490 * 186.22247 * 8 7 6 33 33 H 1.09003 * 109.47919 * 66.18458 * 8 7 6 34 34 H 1.08994 * 110.99011 * 25.15122 * 10 9 8 35 35 H 1.09006 * 110.98845 * 261.33498 * 10 9 8 36 36 H 1.09001 * 110.24224 * 215.96439 * 11 10 9 37 37 H 1.08997 * 110.32066 * 94.00455 * 11 10 9 38 38 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 39 39 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 40 40 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 41 41 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 42 42 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.48485 * 60.00324 * 25 9 8 44 44 H 1.09002 * 109.48254 * 180.02562 * 25 9 8 45 45 H 1.09006 * 109.59295 * 245.64313 * 26 6 4 46 46 H 1.09001 * 109.59524 * 5.94262 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0781 0.0018 -0.0003 5 8 4.6853 0.9498 0.4594 6 7 4.7528 -1.0478 -0.5099 7 6 6.2220 -1.0602 -0.5174 8 6 6.7049 -1.3164 -1.9492 9 6 6.0499 -2.5848 -2.4860 10 6 6.5612 -2.8790 -3.9107 11 6 6.6403 -4.4227 -3.9018 12 7 6.8047 -4.7987 -2.4921 13 6 7.2721 -6.1098 -2.0352 14 6 8.7968 -6.0919 -1.9085 15 6 9.2777 -7.4407 -1.4390 16 1 8.5668 -8.2315 -1.2495 17 6 10.6249 -7.6651 -1.2504 18 7 11.4905 -6.7020 -1.4806 19 14 11.2210 -9.3372 -0.6691 20 1 10.8187 -10.3752 -1.6518 21 1 12.7008 -9.3199 -0.5460 22 1 10.6175 -9.6461 0.6521 23 6 6.4653 -3.7858 -1.6738 24 8 6.4917 -3.8312 -0.4621 25 6 4.5310 -2.4484 -2.4957 26 6 4.0324 -2.2003 -1.0681 27 1 -0.3633 1.0272 0.0329 28 1 -0.3632 -0.4850 -0.9060 29 1 -0.3633 -0.5421 0.8730 30 1 6.5841 -1.8524 0.1379 31 1 6.5995 -0.0982 -0.1710 32 1 7.7880 -1.4381 -1.9513 33 1 6.4326 -0.4713 -2.5814 34 1 7.5452 -2.4386 -4.0711 35 1 5.8515 -2.5288 -4.6603 36 1 7.4976 -4.7597 -4.4844 37 1 5.7213 -4.8511 -4.3016 38 1 6.9763 -6.8723 -2.7557 39 1 6.8296 -6.3354 -1.0649 40 1 9.2393 -5.8662 -2.8786 41 1 9.0926 -5.3293 -1.1880 42 1 12.4382 -6.8599 -1.3482 43 1 4.2453 -1.6100 -3.1311 44 1 4.0861 -3.3654 -2.8821 45 1 4.2232 -3.0820 -0.4561 46 1 2.9629 -1.9905 -1.0834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269203899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:56 Heat of formation + Delta-G solvation = -21.697486 kcal Electronic energy + Delta-G solvation = -27056.046391 eV Core-core repulsion = 23332.759886 eV Total energy + Delta-G solvation = -3723.286505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24798 -39.60106 -36.87580 -36.14240 -34.62828 -34.12887 -32.81158 -31.44530 -30.59077 -29.22847 -28.47220 -26.22375 -25.02041 -23.76180 -23.26804 -21.88135 -21.26929 -20.33426 -18.66274 -17.96040 -16.75932 -16.53697 -15.94079 -15.60449 -15.38356 -15.33199 -14.86587 -14.50436 -14.23488 -14.21204 -14.07225 -14.02734 -13.70927 -13.46796 -13.22116 -12.89185 -12.68505 -12.52449 -12.29962 -12.22827 -11.93173 -11.62472 -11.39552 -11.28084 -10.94578 -10.77954 -10.73797 -10.69703 -10.56625 -10.53587 -10.17073 -10.01887 -9.90184 -9.39331 -9.16600 -8.58130 -8.39926 -8.06736 -6.05173 -4.09007 1.40754 2.07125 2.85714 2.93977 3.30799 3.35336 3.36811 3.38418 3.50646 3.85888 4.25209 4.38472 4.43029 4.50202 4.81917 4.88653 4.93047 5.06173 5.07098 5.08095 5.18584 5.25918 5.30184 5.30963 5.39065 5.44195 5.50391 5.62062 5.68831 5.77933 5.84498 5.86484 5.89340 6.00663 6.04181 6.21634 6.40489 6.41993 6.76368 6.94671 7.01231 7.22924 7.46373 7.62929 7.80742 7.93951 7.96694 8.29975 8.62023 8.97412 9.55272 11.06134 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.002776 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.618005 B =10084.143210 C =10214.165852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.094 4.094 3 C -0.219 4.219 4 C 0.629 3.371 5 O -0.531 6.531 6 N -0.589 5.589 7 C 0.103 3.897 8 C -0.109 4.109 9 C -0.095 4.095 10 C -0.124 4.124 11 C 0.101 3.899 12 N -0.609 5.609 13 C 0.127 3.873 14 C 0.013 3.987 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.522 3.478 24 O -0.525 6.525 25 C -0.109 4.109 26 C 0.105 3.895 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.016 0.984 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.373 11.562 -6.142 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C -0.222 4.222 4 C 0.418 3.582 5 O -0.410 6.410 6 N -0.320 5.320 7 C -0.019 4.019 8 C -0.148 4.148 9 C -0.099 4.099 10 C -0.162 4.162 11 C -0.023 4.023 12 N -0.341 5.341 13 C 0.008 3.992 14 C -0.025 4.025 15 C -0.563 4.563 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.308 3.692 24 O -0.402 6.402 25 C -0.148 4.148 26 C -0.018 4.018 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.771 11.957 -5.239 23.692 hybrid contribution 0.514 -1.073 0.104 1.194 sum -19.257 10.884 -5.135 22.708 Atomic orbital electron populations 1.19105 0.83538 1.03998 1.04008 1.22686 0.93835 0.97944 0.95223 1.20724 0.92577 1.03596 1.05264 1.14777 0.82596 0.82416 0.78426 1.90833 1.68731 1.34650 1.46769 1.47838 1.07562 1.17667 1.58982 1.21960 0.77488 1.04700 0.97714 1.21727 1.00973 0.95652 0.96441 1.21050 0.96677 0.95674 0.96509 1.22705 1.02762 0.95510 0.95245 1.22050 1.01974 0.94555 0.83727 1.48591 1.64450 1.14710 1.06393 1.21810 0.98676 0.79787 0.98969 1.19388 0.88019 0.97604 0.97468 1.21038 0.92161 0.97321 1.45737 0.92563 1.25000 0.96911 0.96974 0.95361 1.69959 1.02142 1.32247 1.48759 0.86610 0.77590 0.84135 0.79391 1.20196 1.21241 1.20131 1.20364 0.76955 0.84611 0.87255 1.90650 1.54540 1.82331 1.12635 1.21725 0.93133 1.02964 0.96977 1.21823 0.96155 0.89378 0.94450 0.89293 0.89151 0.89025 0.88025 0.88886 0.89740 0.90741 0.89618 0.89439 0.90054 0.91622 0.91680 0.91112 0.96520 0.96105 0.92839 0.90364 0.90053 0.89791 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.23 10.32 34.37 0.35 0.13 16 2 C -0.09 -0.90 14.07 -37.12 -0.52 -1.42 16 3 C -0.22 -2.74 11.57 -38.83 -0.45 -3.19 16 4 C 0.63 9.38 7.55 -14.33 -0.11 9.27 16 5 O -0.53 -9.59 16.50 5.27 0.09 -9.50 16 6 N -0.59 -7.99 2.96 -175.56 -0.52 -8.51 16 7 C 0.10 1.46 6.00 -3.67 -0.02 1.44 16 8 C -0.11 -1.34 4.80 -26.85 -0.13 -1.47 16 9 C -0.10 -1.16 0.55 -155.48 -0.09 -1.24 16 10 C -0.12 -1.25 6.20 -25.27 -0.16 -1.41 16 11 C 0.10 1.23 7.35 -3.04 -0.02 1.21 16 12 N -0.61 -10.28 2.94 -172.46 -0.51 -10.78 16 13 C 0.13 2.59 5.88 -4.04 -0.02 2.56 16 14 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 15 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 19 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.52 8.79 6.24 -11.02 -0.07 8.72 16 24 O -0.52 -10.70 13.72 5.55 0.08 -10.63 16 25 C -0.11 -1.08 4.77 -26.86 -0.13 -1.21 16 26 C 0.10 1.20 5.91 -3.68 -0.02 1.18 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 1.70 5.87 -51.93 -0.30 1.40 16 31 H 0.09 1.34 7.01 -51.93 -0.36 0.97 16 32 H 0.08 1.07 8.13 -51.93 -0.42 0.65 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.87 7.88 -51.93 -0.41 0.46 16 35 H 0.09 0.63 7.87 -51.93 -0.41 0.22 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.52 7.92 -51.93 -0.41 1.11 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.13 6.82 -51.93 -0.35 0.78 16 46 H 0.08 0.81 6.31 -51.93 -0.33 0.48 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -35.37 374.76 -8.64 -44.00 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.19 Total: -2.13 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.94 Total: 1.42 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.29 Total: -45.34 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.16 Total: -20.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.37 -8.64 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269203899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.307 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds