Wall clock time and date at job start Tue Mar 31 2020 13:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43207 * 179.97438 * 155.95589 * 3 2 1 5 5 O 1.21609 * 119.99638 * 205.88459 * 4 3 2 6 6 N 1.34774 * 120.00016 * 25.88336 * 4 3 2 7 7 C 1.46928 * 120.60249 * 179.97438 * 6 4 3 8 8 C 1.53261 * 108.73992 * 234.12339 * 7 6 4 9 9 C 1.52506 * 109.42409 * 306.20327 * 8 7 6 10 10 C 1.54205 * 109.96499 * 181.76745 * 9 8 7 11 11 C 1.54574 * 101.66346 * 143.24632 * 10 9 8 12 12 N 1.46817 * 105.48870 * 334.96213 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.90174 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.34565 * 111.27675 * 17.16565 * 12 11 10 24 24 O 1.21284 * 125.02159 * 179.08718 * 23 12 11 25 25 C 1.52504 * 110.83248 * 59.97195 * 9 8 7 26 26 C 1.46934 * 120.60214 * 359.97438 * 6 4 3 27 27 H 1.09004 * 109.46843 * 358.16341 * 1 2 3 28 28 H 1.08993 * 109.46680 * 118.16065 * 1 2 3 29 29 H 1.08997 * 109.46910 * 238.16148 * 1 2 3 30 30 H 1.09006 * 109.58961 * 114.34538 * 7 6 4 31 31 H 1.08994 * 109.71316 * 353.97537 * 7 6 4 32 32 H 1.08996 * 109.48490 * 186.22247 * 8 7 6 33 33 H 1.09003 * 109.47919 * 66.18458 * 8 7 6 34 34 H 1.08994 * 110.99011 * 25.15122 * 10 9 8 35 35 H 1.09006 * 110.98845 * 261.33498 * 10 9 8 36 36 H 1.09001 * 110.24224 * 215.96439 * 11 10 9 37 37 H 1.08997 * 110.32066 * 94.00455 * 11 10 9 38 38 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 39 39 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 40 40 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 41 41 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 42 42 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.48485 * 60.00324 * 25 9 8 44 44 H 1.09002 * 109.48254 * 180.02562 * 25 9 8 45 45 H 1.09006 * 109.59295 * 245.64313 * 26 6 4 46 46 H 1.09001 * 109.59524 * 5.94262 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0781 0.0018 -0.0003 5 8 4.6853 0.9498 0.4594 6 7 4.7528 -1.0478 -0.5099 7 6 6.2220 -1.0602 -0.5174 8 6 6.7049 -1.3164 -1.9492 9 6 6.0499 -2.5848 -2.4860 10 6 6.5612 -2.8790 -3.9107 11 6 6.6403 -4.4227 -3.9018 12 7 6.8047 -4.7987 -2.4921 13 6 7.2721 -6.1098 -2.0352 14 6 8.7968 -6.0919 -1.9085 15 6 9.2777 -7.4407 -1.4390 16 1 8.5668 -8.2315 -1.2495 17 6 10.6249 -7.6651 -1.2504 18 7 11.4905 -6.7020 -1.4806 19 14 11.2210 -9.3372 -0.6691 20 1 10.8187 -10.3752 -1.6518 21 1 12.7008 -9.3199 -0.5460 22 1 10.6175 -9.6461 0.6521 23 6 6.4653 -3.7858 -1.6738 24 8 6.4917 -3.8312 -0.4621 25 6 4.5310 -2.4484 -2.4957 26 6 4.0324 -2.2003 -1.0681 27 1 -0.3633 1.0272 0.0329 28 1 -0.3632 -0.4850 -0.9060 29 1 -0.3633 -0.5421 0.8730 30 1 6.5841 -1.8524 0.1379 31 1 6.5995 -0.0982 -0.1710 32 1 7.7880 -1.4381 -1.9513 33 1 6.4326 -0.4713 -2.5814 34 1 7.5452 -2.4386 -4.0711 35 1 5.8515 -2.5288 -4.6603 36 1 7.4976 -4.7597 -4.4844 37 1 5.7213 -4.8511 -4.3016 38 1 6.9763 -6.8723 -2.7557 39 1 6.8296 -6.3354 -1.0649 40 1 9.2393 -5.8662 -2.8786 41 1 9.0926 -5.3293 -1.1880 42 1 12.4382 -6.8599 -1.3482 43 1 4.2453 -1.6100 -3.1311 44 1 4.0861 -3.3654 -2.8821 45 1 4.2232 -3.0820 -0.4561 46 1 2.9629 -1.9905 -1.0834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269203899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:55 Heat of formation + Delta-G solvation = -44.604358 kcal Electronic energy + Delta-G solvation = -27057.039707 eV Core-core repulsion = 23332.759886 eV Total energy + Delta-G solvation = -3724.279821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.37321 -40.75739 -38.06708 -37.49502 -35.87566 -35.30930 -34.46190 -32.51564 -32.03453 -30.16972 -29.53843 -27.38050 -26.75386 -24.75813 -24.33497 -23.48240 -22.30573 -21.67856 -19.84874 -19.06071 -18.68342 -17.72005 -17.24838 -16.96349 -16.59472 -16.40276 -16.12980 -16.02034 -15.34550 -15.14195 -14.89463 -14.73865 -14.58689 -14.49131 -14.38810 -14.21364 -14.18901 -13.99633 -13.50941 -13.38783 -13.26776 -12.98523 -12.83468 -12.60481 -12.41752 -12.32643 -11.94257 -11.86693 -11.71672 -11.59690 -11.52585 -11.43518 -11.31312 -11.07719 -10.61922 -10.53296 -9.72351 -9.50855 -8.24838 -6.37660 0.47615 1.24185 1.37843 1.41817 1.49309 1.63821 1.89662 2.18678 2.40668 2.43619 3.05575 3.08682 3.23594 3.43531 3.59013 3.89819 3.94826 3.98626 4.26162 4.27636 4.32236 4.37577 4.45910 4.50268 4.57135 4.63190 4.71543 4.74819 4.79321 4.80699 4.82019 4.87890 4.92961 4.99094 5.00163 5.04453 5.16505 5.19743 5.33813 5.37832 5.46698 5.60974 5.83591 6.14683 6.18670 6.25278 6.36240 6.78099 6.87634 7.28253 7.32656 8.86945 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.002776 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.618005 B =10084.143210 C =10214.165852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.041 4.041 3 C -0.290 4.290 4 C 0.627 3.373 5 O -0.580 6.580 6 N -0.587 5.587 7 C 0.104 3.896 8 C -0.104 4.104 9 C -0.087 4.087 10 C -0.111 4.111 11 C 0.093 3.907 12 N -0.619 5.619 13 C 0.144 3.856 14 C 0.025 3.975 15 C -0.545 4.545 16 H 0.066 0.934 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.258 1.258 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.507 3.493 24 O -0.573 6.573 25 C -0.102 4.102 26 C 0.103 3.897 27 H 0.108 0.892 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.000 1.000 41 H -0.029 1.029 42 H 0.264 0.736 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.755 11.017 -8.647 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.044 4.044 3 C -0.293 4.293 4 C 0.417 3.583 5 O -0.462 6.462 6 N -0.317 5.317 7 C -0.018 4.018 8 C -0.142 4.142 9 C -0.090 4.090 10 C -0.149 4.149 11 C -0.029 4.029 12 N -0.350 5.350 13 C 0.022 3.978 14 C -0.013 4.013 15 C -0.583 4.583 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.793 3.207 20 H -0.183 1.183 21 H -0.209 1.209 22 H -0.196 1.196 23 C 0.296 3.704 24 O -0.453 6.453 25 C -0.140 4.140 26 C -0.019 4.019 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.018 0.982 41 H -0.010 1.010 42 H 0.073 0.927 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.074 0.926 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.187 11.392 -7.798 26.986 hybrid contribution 1.485 -0.889 0.947 1.973 sum -21.702 10.503 -6.851 25.064 Atomic orbital electron populations 1.19548 0.79717 1.05815 1.06076 1.23723 0.94681 0.94491 0.91493 1.20439 0.92424 1.07343 1.09079 1.15120 0.83857 0.81886 0.77422 1.90783 1.70050 1.36436 1.48935 1.47896 1.07114 1.18061 1.58605 1.21765 0.78570 1.02752 0.98754 1.21708 1.00254 0.96951 0.95326 1.21060 0.98558 0.92617 0.96802 1.22783 1.03936 0.93635 0.94501 1.22418 1.03428 0.96415 0.80637 1.48693 1.63972 1.13503 1.08856 1.21314 0.94651 0.82718 0.99141 1.19198 0.91933 0.95402 0.94815 1.21529 0.92811 0.98383 1.45605 0.91537 1.26019 0.97181 1.01300 0.95340 1.70107 1.02506 1.34711 1.49927 0.85445 0.76942 0.79140 0.79204 1.18286 1.20928 1.19585 1.21343 0.76060 0.85976 0.87027 1.90627 1.56286 1.83297 1.15084 1.21795 0.90838 1.05309 0.96045 1.21939 0.97364 0.87402 0.95152 0.87378 0.86408 0.87175 0.91499 0.89930 0.91002 0.87886 0.89930 0.84713 0.90735 0.88011 0.89180 0.92982 0.98181 1.01012 0.92728 0.87193 0.87859 0.92604 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.32 70.18 0.72 0.47 16 2 C -0.04 -0.68 14.07 31.13 0.44 -0.24 16 3 C -0.29 -7.11 11.57 30.02 0.35 -6.77 16 4 C 0.63 19.46 7.55 85.49 0.65 20.10 16 5 O -0.58 -22.33 16.50 -4.06 -0.07 -22.40 16 6 N -0.59 -16.49 2.96 -827.60 -2.45 -18.95 16 7 C 0.10 3.19 6.00 86.39 0.52 3.71 16 8 C -0.10 -2.55 4.80 30.52 0.15 -2.41 16 9 C -0.09 -1.98 0.55 -52.81 -0.03 -2.01 16 10 C -0.11 -1.86 6.20 31.54 0.20 -1.66 16 11 C 0.09 2.04 7.35 86.85 0.64 2.68 16 12 N -0.62 -20.91 2.94 -818.05 -2.40 -23.32 16 13 C 0.14 5.97 5.88 86.38 0.51 6.48 16 14 C 0.02 1.32 5.30 29.85 0.16 1.48 16 15 C -0.54 -31.21 9.11 25.60 0.23 -30.97 16 16 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 17 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 18 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 19 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 C 0.51 17.59 6.24 87.73 0.55 18.13 16 24 O -0.57 -25.23 13.72 -3.04 -0.04 -25.27 16 25 C -0.10 -1.69 4.77 30.51 0.15 -1.54 16 26 C 0.10 2.30 5.91 86.38 0.51 2.81 16 27 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 2.53 5.87 -2.38 -0.01 2.51 16 31 H 0.08 2.65 7.01 -2.39 -0.02 2.63 16 32 H 0.07 1.92 8.13 -2.39 -0.02 1.91 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.48 7.88 -2.39 -0.02 1.46 16 35 H 0.13 1.09 7.87 -2.38 -0.02 1.07 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.05 2.33 7.92 -2.39 -0.02 2.31 16 40 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H -0.03 -1.80 8.14 -2.39 -0.02 -1.82 16 42 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.57 6.82 -2.38 -0.02 1.55 16 46 H 0.11 1.86 6.31 -2.39 -0.02 1.84 16 Total: -1.00 -85.57 374.76 4.51 -81.06 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.98 Total: 9.11 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.19 Total: 10.71 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -4.57 Total: -99.79 kcal Atomic # 8 Polarization: -47.56 SS G_CDS: -0.11 Total: -47.67 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -85.57 4.51 -81.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269203899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.451 kcal (2) G-P(sol) polarization free energy of solvation -85.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds