Wall clock time and date at job start Tue Mar 31 2020 13:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 O 1.42906 * 109.47369 * 240.00214 * 2 1 3 5 5 C 1.35900 * 116.99463 * 299.45552 * 4 2 1 6 6 C 1.38732 * 120.05605 * 354.00932 * 5 4 2 7 7 C 1.38152 * 119.93924 * 179.74727 * 6 5 4 8 8 C 1.38265 * 120.05713 * 0.50733 * 7 6 5 9 9 C 1.38264 * 120.10955 * 359.77047 * 8 7 6 10 10 C 1.38143 * 120.06026 * 359.97438 * 9 8 7 11 11 C 1.50705 * 109.47093 * 120.00074 * 2 1 3 12 12 O 1.21272 * 120.00056 * 339.71988 * 11 2 1 13 13 N 1.34783 * 119.99631 * 159.72430 * 11 2 1 14 14 C 1.46960 * 120.58636 * 184.98209 * 13 11 2 15 15 C 1.53368 * 108.63434 * 235.24278 * 14 13 11 16 16 N 1.46964 * 108.63805 * 310.58223 * 15 14 13 17 17 C 1.36935 * 120.59466 * 235.20313 * 16 15 14 18 18 H 1.07993 * 120.00507 * 148.35254 * 17 16 15 19 19 C 1.38808 * 119.99964 * 328.07850 * 17 16 15 20 20 N 1.31622 * 119.99973 * 348.66303 * 19 17 16 21 21 Si 1.86800 * 120.00223 * 168.66514 * 19 17 16 22 22 H 1.48497 * 109.47053 * 89.99940 * 21 19 17 23 23 H 1.48505 * 109.47259 * 210.00010 * 21 19 17 24 24 H 1.48502 * 109.46940 * 329.99879 * 21 19 17 25 25 C 1.46961 * 118.81083 * 55.47573 * 16 15 14 26 26 C 1.46960 * 120.59769 * 5.00135 * 13 11 2 27 27 H 1.09000 * 109.47202 * 303.67613 * 1 2 3 28 28 H 1.09000 * 109.46878 * 63.67630 * 1 2 3 29 29 H 1.08995 * 109.46987 * 183.67593 * 1 2 3 30 30 H 1.08994 * 109.47518 * 184.72493 * 3 2 1 31 31 H 1.08998 * 109.46903 * 304.72735 * 3 2 1 32 32 H 1.09003 * 109.47243 * 64.72243 * 3 2 1 33 33 H 1.07997 * 120.03171 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.97021 * 180.27757 * 7 6 5 35 35 H 1.07996 * 119.94481 * 179.74103 * 8 7 6 36 36 H 1.08002 * 119.97240 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.03123 * 179.97438 * 10 9 8 38 38 H 1.09007 * 109.60644 * 115.50376 * 14 13 11 39 39 H 1.09003 * 109.61651 * 354.99519 * 14 13 11 40 40 H 1.09002 * 109.61156 * 190.83478 * 15 14 13 41 41 H 1.09005 * 109.74748 * 70.40895 * 15 14 13 42 42 H 0.97002 * 120.00297 * 180.02562 * 20 19 17 43 43 H 1.08990 * 109.61464 * 64.26676 * 25 16 15 44 44 H 1.09003 * 109.60718 * 184.78054 * 25 16 15 45 45 H 1.08999 * 109.61161 * 244.49951 * 26 13 11 46 46 H 1.09005 * 109.60811 * 4.83919 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 1.6506 -1.9768 -1.3153 6 6 0.9655 -2.6299 -0.3010 7 6 0.6004 -3.9532 -0.4565 8 6 0.9265 -4.6296 -1.6175 9 6 1.6142 -3.9826 -2.6274 10 6 1.9770 -2.6579 -2.4790 11 6 2.0323 -0.7104 1.2305 12 8 1.3056 -0.8452 2.1920 13 7 3.2893 -1.1959 1.2623 14 6 3.7573 -1.9848 2.4105 15 6 5.0277 -1.3316 2.9687 16 7 5.9547 -1.0811 1.8563 17 6 7.2320 -1.5736 1.8891 18 1 7.7272 -1.8520 0.9706 19 6 7.8924 -1.7098 3.1024 20 7 7.3895 -1.1654 4.1901 21 14 9.4949 -2.6655 3.1915 22 1 10.6350 -1.7432 2.9576 23 1 9.6274 -3.2857 4.5343 24 1 9.4963 -3.7275 2.1534 25 6 5.4884 -0.2874 0.7107 26 6 4.2163 -0.9455 0.1498 27 1 -0.3633 0.5698 0.8552 28 1 -0.3633 0.4557 -0.9211 29 1 -0.3633 -1.0255 0.0659 30 1 3.1267 1.4436 -0.0846 31 1 1.6092 1.9801 -0.8446 32 1 1.7474 1.9313 0.9293 33 1 0.7146 -2.1033 0.6079 34 1 0.0632 -4.4608 0.3309 35 1 0.6438 -5.6653 -1.7355 36 1 1.8681 -4.5132 -3.5332 37 1 2.5146 -2.1530 -3.2680 38 1 3.9802 -3.0022 2.0887 39 1 2.9863 -2.0029 3.1808 40 1 5.4956 -2.0001 3.6914 41 1 4.7744 -0.3886 3.4533 42 1 7.8511 -1.2602 5.0379 43 1 5.2648 0.7285 1.0362 44 1 6.2606 -0.2662 -0.0583 45 1 4.4718 -1.8888 -0.3328 46 1 3.7472 -0.2794 -0.5743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318940050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:34 Heat of formation + Delta-G solvation = 5.249308 kcal Electronic energy + Delta-G solvation = -28774.475200 eV Core-core repulsion = 25052.357196 eV Total energy + Delta-G solvation = -3722.118004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47111 -38.97325 -37.48182 -36.88911 -33.87736 -33.28095 -31.18313 -31.00251 -30.24602 -29.78860 -27.39351 -27.07259 -24.35691 -23.29525 -22.83644 -22.44380 -21.90020 -20.19698 -19.19351 -18.05171 -16.94558 -16.54391 -16.08788 -15.81812 -15.53298 -14.93608 -14.76028 -14.51347 -14.16015 -13.91433 -13.63818 -13.55248 -13.40249 -13.26885 -13.08268 -12.74248 -12.53513 -12.25858 -12.20820 -12.06961 -11.91668 -11.70862 -11.47221 -11.17433 -10.96543 -10.77377 -10.71947 -10.67600 -10.51868 -10.23343 -10.00056 -9.85012 -9.35565 -8.96505 -8.58945 -8.26801 -8.13819 -6.65025 -5.84275 -3.34825 1.33904 1.43170 2.64487 3.08734 3.33562 3.35547 3.40746 3.42789 3.78435 4.40424 4.46283 4.70615 4.73977 4.86633 4.90741 5.12184 5.29407 5.34109 5.36483 5.36894 5.44487 5.54845 5.58650 5.60313 5.71724 5.81571 5.83198 5.94312 5.99078 6.03075 6.07468 6.13931 6.30471 6.32821 6.40530 6.42384 6.51092 6.53073 6.70512 6.74481 6.87403 7.24610 7.32604 7.56061 7.72234 7.84908 8.38989 8.39749 9.13392 9.74242 10.32954 11.22725 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.004417 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.094501 B = 6338.336951 C = 7038.066425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.141 4.141 4 O -0.297 6.297 5 C 0.131 3.869 6 C -0.213 4.213 7 C -0.081 4.081 8 C -0.159 4.159 9 C -0.086 4.086 10 C -0.150 4.150 11 C 0.493 3.507 12 O -0.553 6.553 13 N -0.577 5.577 14 C 0.084 3.916 15 C 0.161 3.839 16 N -0.590 5.590 17 C -0.257 4.257 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.903 5.903 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.130 3.870 26 C 0.079 3.921 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.023 0.977 42 H 0.255 0.745 43 H 0.022 0.978 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -0.534 -12.416 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.058 3.942 3 C -0.198 4.198 4 O -0.212 6.212 5 C 0.086 3.914 6 C -0.231 4.231 7 C -0.099 4.099 8 C -0.177 4.177 9 C -0.104 4.104 10 C -0.169 4.169 11 C 0.280 3.720 12 O -0.433 6.433 13 N -0.308 5.308 14 C -0.039 4.039 15 C 0.035 3.965 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.193 4.193 20 N -0.547 5.547 21 Si 0.735 3.265 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.003 3.997 26 C -0.046 4.046 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.165 0.835 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.041 0.959 42 H 0.066 0.934 43 H 0.040 0.960 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.898 -0.496 -11.853 18.273 hybrid contribution 0.889 -0.568 0.348 1.111 sum -13.009 -1.064 -11.505 17.399 Atomic orbital electron populations 1.22490 0.92317 1.04771 1.03577 1.22071 0.95710 0.94021 0.82446 1.21914 1.03213 0.90779 1.03896 1.86185 1.69970 1.21817 1.43180 1.18924 0.94795 0.83434 0.94226 1.21964 1.03844 0.96978 1.00297 1.20954 0.98121 0.93603 0.97249 1.21042 1.01948 1.00098 0.94603 1.20915 0.97060 0.93580 0.98844 1.20418 1.04978 0.94919 0.96593 1.20775 0.82405 0.79689 0.89175 1.90679 1.56388 1.59503 1.36753 1.48055 1.10735 1.50856 1.21114 1.22578 0.99103 0.94453 0.87793 1.21160 0.86257 0.98495 0.90591 1.43948 1.10212 1.58882 1.18237 1.19165 0.90003 1.36377 0.93101 0.91697 1.25197 0.97896 0.99482 0.96686 1.69963 1.39976 1.45474 0.99283 0.86258 0.83449 0.79737 0.77068 1.21274 1.21513 1.20388 1.21418 0.93326 0.93188 0.91754 1.22862 0.91847 1.01523 0.88327 0.89869 0.90912 0.90364 0.90265 0.90369 0.89744 0.83515 0.86062 0.86183 0.85590 0.85268 0.92142 0.90258 0.88256 0.95881 0.93439 0.96004 0.91535 0.91917 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 7.66 37.15 0.28 -1.83 16 2 C 0.10 1.36 0.67 -91.77 -0.06 1.30 16 3 C -0.14 -1.65 8.61 37.16 0.32 -1.33 16 4 O -0.30 -4.10 6.96 -19.43 -0.14 -4.24 16 5 C 0.13 1.84 5.51 -39.22 -0.22 1.62 16 6 C -0.21 -3.09 6.83 -39.43 -0.27 -3.36 16 7 C -0.08 -1.05 10.04 -39.60 -0.40 -1.45 16 8 C -0.16 -1.81 10.04 -39.56 -0.40 -2.21 16 9 C -0.09 -0.95 10.04 -39.61 -0.40 -1.35 16 10 C -0.15 -1.86 9.99 -39.43 -0.39 -2.25 16 11 C 0.49 8.58 3.85 -10.98 -0.04 8.54 16 12 O -0.55 -10.94 14.61 5.56 0.08 -10.86 16 13 N -0.58 -10.72 2.87 -172.21 -0.49 -11.22 16 14 C 0.08 1.73 6.60 -3.60 -0.02 1.71 16 15 C 0.16 3.89 5.45 -3.60 -0.02 3.87 16 16 N -0.59 -14.53 2.95 -171.77 -0.51 -15.04 16 17 C -0.26 -6.88 9.57 -15.06 -0.14 -7.03 16 18 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 19 C 0.01 0.17 5.03 -17.43 -0.09 0.09 16 20 N -0.90 -25.83 11.10 55.49 0.62 -25.22 16 21 Si 0.91 21.33 29.57 -169.99 -5.03 16.30 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.13 2.65 6.70 -3.37 -0.02 2.63 16 26 C 0.08 1.38 4.93 -3.37 -0.02 1.36 16 27 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.01 4.92 -51.93 -0.26 0.76 16 30 H 0.08 0.98 6.54 -51.93 -0.34 0.64 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.15 2.36 3.03 -52.49 -0.16 2.20 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 1.63 6.99 -51.93 -0.36 1.26 16 40 H 0.10 2.64 6.08 -51.93 -0.32 2.32 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.10 1.47 3.60 -51.93 -0.19 1.28 16 LS Contribution 353.39 15.07 5.33 5.33 Total: -1.00 -30.73 353.39 -8.67 -39.41 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.65 Total: 5.24 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.89 Total: 0.31 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.39 Total: -51.48 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.05 Total: -15.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.73 -8.67 -39.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318940050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.655 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds