Wall clock time and date at job start Tue Mar 31 2020 13:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 O 1.42906 * 109.47369 * 240.00214 * 2 1 3 5 5 C 1.35900 * 116.99463 * 299.45552 * 4 2 1 6 6 C 1.38732 * 120.05605 * 354.00932 * 5 4 2 7 7 C 1.38152 * 119.93924 * 179.74727 * 6 5 4 8 8 C 1.38265 * 120.05713 * 0.50733 * 7 6 5 9 9 C 1.38264 * 120.10955 * 359.77047 * 8 7 6 10 10 C 1.38143 * 120.06026 * 359.97438 * 9 8 7 11 11 C 1.50705 * 109.47093 * 120.00074 * 2 1 3 12 12 O 1.21272 * 120.00056 * 339.71988 * 11 2 1 13 13 N 1.34783 * 119.99631 * 159.72430 * 11 2 1 14 14 C 1.46960 * 120.58636 * 184.98209 * 13 11 2 15 15 C 1.53368 * 108.63434 * 235.24278 * 14 13 11 16 16 N 1.46964 * 108.63805 * 310.58223 * 15 14 13 17 17 C 1.36935 * 120.59466 * 235.20313 * 16 15 14 18 18 H 1.07993 * 120.00507 * 148.35254 * 17 16 15 19 19 C 1.38808 * 119.99964 * 328.07850 * 17 16 15 20 20 N 1.31622 * 119.99973 * 348.66303 * 19 17 16 21 21 Si 1.86800 * 120.00223 * 168.66514 * 19 17 16 22 22 H 1.48497 * 109.47053 * 89.99940 * 21 19 17 23 23 H 1.48505 * 109.47259 * 210.00010 * 21 19 17 24 24 H 1.48502 * 109.46940 * 329.99879 * 21 19 17 25 25 C 1.46961 * 118.81083 * 55.47573 * 16 15 14 26 26 C 1.46960 * 120.59769 * 5.00135 * 13 11 2 27 27 H 1.09000 * 109.47202 * 303.67613 * 1 2 3 28 28 H 1.09000 * 109.46878 * 63.67630 * 1 2 3 29 29 H 1.08995 * 109.46987 * 183.67593 * 1 2 3 30 30 H 1.08994 * 109.47518 * 184.72493 * 3 2 1 31 31 H 1.08998 * 109.46903 * 304.72735 * 3 2 1 32 32 H 1.09003 * 109.47243 * 64.72243 * 3 2 1 33 33 H 1.07997 * 120.03171 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.97021 * 180.27757 * 7 6 5 35 35 H 1.07996 * 119.94481 * 179.74103 * 8 7 6 36 36 H 1.08002 * 119.97240 * 179.97438 * 9 8 7 37 37 H 1.08001 * 120.03123 * 179.97438 * 10 9 8 38 38 H 1.09007 * 109.60644 * 115.50376 * 14 13 11 39 39 H 1.09003 * 109.61651 * 354.99519 * 14 13 11 40 40 H 1.09002 * 109.61156 * 190.83478 * 15 14 13 41 41 H 1.09005 * 109.74748 * 70.40895 * 15 14 13 42 42 H 0.97002 * 120.00297 * 180.02562 * 20 19 17 43 43 H 1.08990 * 109.61464 * 64.26676 * 25 16 15 44 44 H 1.09003 * 109.60718 * 184.78054 * 25 16 15 45 45 H 1.08999 * 109.61161 * 244.49951 * 26 13 11 46 46 H 1.09005 * 109.60811 * 4.83919 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 1.6506 -1.9768 -1.3153 6 6 0.9655 -2.6299 -0.3010 7 6 0.6004 -3.9532 -0.4565 8 6 0.9265 -4.6296 -1.6175 9 6 1.6142 -3.9826 -2.6274 10 6 1.9770 -2.6579 -2.4790 11 6 2.0323 -0.7104 1.2305 12 8 1.3056 -0.8452 2.1920 13 7 3.2893 -1.1959 1.2623 14 6 3.7573 -1.9848 2.4105 15 6 5.0277 -1.3316 2.9687 16 7 5.9547 -1.0811 1.8563 17 6 7.2320 -1.5736 1.8891 18 1 7.7272 -1.8520 0.9706 19 6 7.8924 -1.7098 3.1024 20 7 7.3895 -1.1654 4.1901 21 14 9.4949 -2.6655 3.1915 22 1 10.6350 -1.7432 2.9576 23 1 9.6274 -3.2857 4.5343 24 1 9.4963 -3.7275 2.1534 25 6 5.4884 -0.2874 0.7107 26 6 4.2163 -0.9455 0.1498 27 1 -0.3633 0.5698 0.8552 28 1 -0.3633 0.4557 -0.9211 29 1 -0.3633 -1.0255 0.0659 30 1 3.1267 1.4436 -0.0846 31 1 1.6092 1.9801 -0.8446 32 1 1.7474 1.9313 0.9293 33 1 0.7146 -2.1033 0.6079 34 1 0.0632 -4.4608 0.3309 35 1 0.6438 -5.6653 -1.7355 36 1 1.8681 -4.5132 -3.5332 37 1 2.5146 -2.1530 -3.2680 38 1 3.9802 -3.0022 2.0887 39 1 2.9863 -2.0029 3.1808 40 1 5.4956 -2.0001 3.6914 41 1 4.7744 -0.3886 3.4533 42 1 7.8511 -1.2602 5.0379 43 1 5.2648 0.7285 1.0362 44 1 6.2606 -0.2662 -0.0583 45 1 4.4718 -1.8888 -0.3328 46 1 3.7472 -0.2794 -0.5743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318940050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:33 Heat of formation + Delta-G solvation = -12.053999 kcal Electronic energy + Delta-G solvation = -28775.225528 eV Core-core repulsion = 25052.357196 eV Total energy + Delta-G solvation = -3722.868332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65494 -40.20919 -38.70274 -38.39199 -35.66776 -34.34024 -33.08452 -32.08979 -31.81930 -30.74567 -28.85356 -28.34029 -26.00323 -24.84748 -24.21812 -23.39649 -23.23618 -21.69998 -20.52117 -19.51325 -18.31558 -17.96784 -17.42188 -17.05412 -16.77448 -16.59106 -16.15452 -15.85841 -15.49539 -15.27921 -15.22806 -15.07418 -14.90625 -14.46897 -14.31383 -13.84204 -13.77308 -13.41168 -13.26202 -13.18633 -13.11008 -13.04686 -12.92210 -12.69903 -12.51237 -12.46532 -12.32084 -12.05832 -11.97549 -11.84356 -11.69926 -11.62037 -10.74973 -10.62995 -9.94237 -9.85651 -9.14670 -8.63128 -7.89607 -5.44291 0.39275 0.48129 1.32407 1.46909 1.48188 1.57555 1.84634 2.09701 2.48827 2.83936 3.17192 3.26402 3.57781 3.68037 3.70439 3.91774 3.96925 4.19201 4.22018 4.25991 4.34346 4.39480 4.49678 4.51668 4.55841 4.58254 4.61311 4.66823 4.70930 4.72065 4.79716 4.91213 4.99446 5.05646 5.09247 5.12779 5.21538 5.36407 5.40518 5.49853 5.57393 5.60889 5.62765 5.81660 6.27217 6.35498 6.43212 6.96817 7.08483 7.75502 8.30931 9.15116 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.004417 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.094501 B = 6338.336951 C = 7038.066425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 C -0.141 4.141 4 O -0.296 6.296 5 C 0.113 3.887 6 C -0.232 4.232 7 C -0.097 4.097 8 C -0.158 4.158 9 C -0.083 4.083 10 C -0.155 4.155 11 C 0.493 3.507 12 O -0.580 6.580 13 N -0.585 5.585 14 C 0.101 3.899 15 C 0.175 3.825 16 N -0.607 5.607 17 C -0.265 4.265 18 H 0.071 0.929 19 C -0.046 4.046 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.283 1.283 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.127 3.873 26 C 0.096 3.904 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.070 0.930 41 H -0.006 1.006 42 H 0.251 0.749 43 H 0.019 0.981 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.136 -0.983 -15.415 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.063 3.937 3 C -0.198 4.198 4 O -0.210 6.210 5 C 0.069 3.931 6 C -0.250 4.250 7 C -0.115 4.115 8 C -0.176 4.176 9 C -0.101 4.101 10 C -0.174 4.174 11 C 0.282 3.718 12 O -0.462 6.462 13 N -0.315 5.315 14 C -0.024 4.024 15 C 0.048 3.952 16 N -0.330 5.330 17 C -0.395 4.395 18 H 0.089 0.911 19 C -0.242 4.242 20 N -0.582 5.582 21 Si 0.799 3.201 22 H -0.209 1.209 23 H -0.221 1.221 24 H -0.193 1.193 25 C 0.001 3.999 26 C -0.027 4.027 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.165 0.835 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.013 0.987 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.286 -0.936 -14.898 20.661 hybrid contribution 0.930 -0.454 1.239 1.614 sum -13.356 -1.390 -13.659 19.154 Atomic orbital electron populations 1.22478 0.90963 1.04397 1.04850 1.22115 0.96678 0.94348 0.80585 1.21981 1.02902 0.89522 1.05363 1.86155 1.70254 1.21977 1.42623 1.19124 0.95629 0.83489 0.94884 1.21888 1.05276 0.97801 1.00029 1.21177 0.98564 0.93347 0.98400 1.21386 1.01094 1.01235 0.93857 1.21342 0.95797 0.93216 0.99737 1.20753 1.04759 0.95524 0.96349 1.21539 0.81422 0.78693 0.90153 1.90656 1.56918 1.60302 1.38363 1.48081 1.11655 1.51137 1.20633 1.22142 0.97231 0.94308 0.88694 1.20830 0.87505 0.96548 0.90337 1.44172 1.09911 1.59796 1.19143 1.19517 0.90732 1.35913 0.93343 0.91091 1.25958 1.01126 1.00675 0.96411 1.70133 1.41396 1.47108 0.99602 0.85228 0.79618 0.78517 0.76770 1.20942 1.22094 1.19279 1.21590 0.94954 0.92747 0.90607 1.22735 0.90402 1.01563 0.88026 0.89960 0.88328 0.91474 0.90938 0.87133 0.89799 0.85540 0.85443 0.83678 0.82426 0.83514 0.92258 0.90649 0.91211 0.98750 0.93981 0.96262 0.90404 0.92316 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 7.66 71.98 0.55 -3.31 16 2 C 0.10 2.71 0.67 -11.54 -0.01 2.70 16 3 C -0.14 -2.98 8.61 71.98 0.62 -2.36 16 4 O -0.30 -7.51 6.96 -92.43 -0.64 -8.15 16 5 C 0.11 2.96 5.51 22.51 0.12 3.09 16 6 C -0.23 -6.58 6.83 22.37 0.15 -6.42 16 7 C -0.10 -2.40 10.04 22.26 0.22 -2.17 16 8 C -0.16 -3.18 10.04 22.28 0.22 -2.96 16 9 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 10 C -0.16 -3.39 9.99 22.37 0.22 -3.17 16 11 C 0.49 17.12 3.85 87.66 0.34 17.46 16 12 O -0.58 -23.43 14.61 -3.00 -0.04 -23.47 16 13 N -0.58 -21.75 2.87 -817.15 -2.35 -24.10 16 14 C 0.10 4.27 6.60 86.42 0.57 4.85 16 15 C 0.17 8.76 5.45 86.41 0.47 9.23 16 16 N -0.61 -30.32 2.95 -697.37 -2.06 -32.38 16 17 C -0.27 -14.28 9.57 84.03 0.80 -13.48 16 18 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 19 C -0.05 -2.54 5.03 84.86 0.43 -2.11 16 20 N -0.94 -55.25 11.10 21.65 0.24 -55.01 16 21 Si 0.97 44.20 29.57 68.60 2.03 46.23 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C 0.13 5.11 6.70 86.57 0.58 5.69 16 26 C 0.10 3.26 4.93 86.57 0.43 3.69 16 27 H 0.08 1.87 8.02 -2.39 -0.02 1.85 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.70 4.92 -2.39 -0.01 1.69 16 30 H 0.07 1.64 6.54 -2.39 -0.02 1.62 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.13 4.10 3.03 -2.91 -0.01 4.09 16 34 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 38 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.08 3.23 6.99 -2.39 -0.02 3.22 16 40 H 0.07 3.90 6.08 -2.39 -0.01 3.89 16 41 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 2.93 7.93 -2.39 -0.02 2.91 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.12 3.53 3.60 -2.38 -0.01 3.52 16 Total: -1.00 -67.79 353.39 4.11 -63.68 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.98 Total: 23.83 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.95 Total: 9.38 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -4.16 Total: -111.49 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.69 Total: -31.62 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.79 4.11 -63.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318940050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.622 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds