Wall clock time and date at job start Tue Mar 31 2020 13:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46980 * 2 1 4 4 H 1.09000 * 110.53834 * 307.60895 * 3 2 1 5 5 C 1.55009 * 110.52647 * 70.27668 * 3 2 1 6 6 C 1.54887 * 102.75681 * 156.61435 * 5 3 2 7 7 C 1.54264 * 104.19484 * 322.04322 * 6 5 3 8 8 C 1.53877 * 106.59853 * 23.61276 * 7 6 5 9 9 H 1.09002 * 110.03587 * 119.33197 * 8 7 6 10 10 N 1.46501 * 110.02960 * 240.71111 * 8 7 6 11 11 C 1.34765 * 120.00226 * 272.90350 * 10 8 7 12 12 O 1.21593 * 120.00198 * 0.02562 * 11 10 8 13 13 N 1.34779 * 120.00266 * 180.02562 * 11 10 8 14 14 C 1.40021 * 120.00163 * 175.49918 * 13 11 10 15 15 C 1.38906 * 120.00343 * 35.12876 * 14 13 11 16 16 C 1.38008 * 120.00269 * 179.97438 * 15 14 13 17 17 C 1.38905 * 119.99807 * 359.97438 * 16 15 14 18 18 O 1.35788 * 119.99835 * 180.02562 * 17 16 15 19 19 C 1.34814 * 117.00157 * 5.33436 * 18 17 16 20 20 H 1.07999 * 119.99538 * 354.96915 * 19 18 17 21 21 C 1.38624 * 120.00096 * 174.96947 * 19 18 17 22 22 N 1.31582 * 120.00042 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00225 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47395 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.46751 * 299.99784 * 23 21 19 26 26 H 1.48500 * 109.46979 * 59.99596 * 23 21 19 27 27 C 1.38901 * 120.00145 * 0.28834 * 17 16 15 28 28 C 1.38010 * 120.00366 * 359.45884 * 27 17 16 29 29 H 1.09002 * 109.47277 * 59.99695 * 1 2 3 30 30 H 1.08994 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46814 * 300.00354 * 1 2 3 32 32 H 1.08997 * 109.47121 * 240.00384 * 2 1 3 33 33 H 1.08997 * 109.47498 * 119.99408 * 2 1 3 34 34 H 1.09000 * 110.76679 * 38.29095 * 5 3 2 35 35 H 1.09003 * 110.89739 * 274.99838 * 5 3 2 36 36 H 1.08998 * 110.48554 * 203.36426 * 6 5 3 37 37 H 1.09000 * 110.48659 * 80.72691 * 6 5 3 38 38 H 1.08999 * 110.03577 * 264.32345 * 7 6 5 39 39 H 1.09000 * 110.02885 * 142.89075 * 7 6 5 40 40 H 0.97004 * 119.99276 * 92.90933 * 10 8 7 41 41 H 0.97008 * 119.99938 * 355.49296 * 13 11 10 42 42 H 1.08001 * 120.00413 * 359.95956 * 15 14 13 43 43 H 1.07999 * 120.00514 * 179.97438 * 16 15 14 44 44 H 0.96997 * 119.99906 * 0.02562 * 22 21 19 45 45 H 1.08006 * 119.99829 * 179.72810 * 27 17 16 46 46 H 1.07996 * 120.00465 * 180.29335 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5801 2.0107 -0.8086 5 6 1.7592 2.1183 1.3665 6 6 2.8169 3.2488 1.4127 7 6 4.0712 2.6199 0.7716 8 6 3.5772 1.4717 -0.1260 9 1 3.8636 1.6573 -1.1612 10 7 4.1424 0.1995 0.3302 11 6 5.3476 -0.2024 -0.1195 12 8 5.9662 0.4913 -0.9035 13 7 5.8674 -1.3731 0.2999 14 6 7.0745 -1.8358 -0.2380 15 6 8.0738 -0.9336 -0.5798 16 6 9.2638 -1.3897 -1.1095 17 6 9.4624 -2.7512 -1.3002 18 8 10.6334 -3.2001 -1.8209 19 6 11.6018 -2.2853 -2.0277 20 1 11.4003 -1.2379 -1.8582 21 6 12.8562 -2.6891 -2.4580 22 7 13.1018 -3.9652 -2.6641 23 14 14.1983 -1.4217 -2.7439 24 1 15.4363 -2.1052 -3.1972 25 1 13.7556 -0.4579 -3.7833 26 1 14.4701 -0.6944 -1.4781 27 6 8.4610 -3.6531 -0.9635 28 6 7.2730 -3.1974 -0.4290 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.9108 1.4139 2.1844 35 1 0.7509 2.5313 1.3962 36 1 3.0202 3.5392 2.4435 37 1 2.4820 4.1085 0.8323 38 1 4.7314 2.2305 1.5465 39 1 4.5964 3.3631 0.1717 40 1 3.6491 -0.3537 0.9560 41 1 5.4052 -1.8950 0.9744 42 1 7.9195 0.1250 -0.4314 43 1 10.0406 -0.6883 -1.3756 44 1 12.4051 -4.6234 -2.5152 45 1 8.6138 -4.7113 -1.1160 46 1 6.4963 -3.8990 -0.1629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319073229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:52 Heat of formation + Delta-G solvation = -45.774713 kcal Electronic energy + Delta-G solvation = -26142.166358 eV Core-core repulsion = 22417.835787 eV Total energy + Delta-G solvation = -3724.330572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.62646 -39.27812 -38.42670 -36.55180 -34.04425 -33.64569 -33.40427 -32.05845 -30.20587 -28.53248 -27.97556 -27.07137 -24.81642 -23.23443 -22.53653 -21.82891 -20.81462 -20.60851 -19.59771 -18.67814 -18.22735 -17.30036 -16.42098 -15.91831 -15.62103 -15.32560 -14.88306 -14.80970 -14.26893 -14.23690 -13.99018 -13.64883 -13.62383 -13.43146 -13.27923 -13.12276 -12.65948 -12.44921 -12.07881 -11.76438 -11.72743 -11.56173 -11.38071 -11.19707 -11.04436 -10.92022 -10.88312 -10.82525 -10.72507 -10.42848 -10.25228 -9.89245 -9.62158 -9.21740 -9.12140 -8.59620 -8.20982 -6.93694 -6.72084 -3.99931 2.13498 2.23847 2.74701 3.28258 3.30016 3.37283 3.49570 4.08478 4.16347 4.26789 4.27270 4.39415 4.59724 4.79683 4.87532 4.93745 5.11553 5.12599 5.19570 5.23141 5.26369 5.32255 5.34285 5.47343 5.55375 5.60802 5.64314 5.69543 5.72553 5.75372 5.87070 5.93420 5.94058 6.06824 6.14093 6.18622 6.29220 6.51576 6.69994 6.72359 6.94469 7.17119 7.21310 7.37328 7.61875 7.75404 8.07937 8.45058 8.71841 8.97253 9.66122 10.72033 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.002377 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.119764 B =11775.454104 C =12589.260298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.099 4.099 4 H 0.087 0.913 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.136 4.136 8 C 0.164 3.836 9 H 0.090 0.910 10 N -0.741 5.741 11 C 0.698 3.302 12 O -0.575 6.575 13 N -0.677 5.677 14 C 0.057 3.943 15 C -0.064 4.064 16 C -0.215 4.215 17 C 0.147 3.853 18 O -0.203 6.203 19 C -0.470 4.470 20 H 0.084 0.916 21 C 0.009 3.991 22 N -0.883 5.883 23 Si 1.095 2.905 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.181 4.181 28 C -0.096 4.096 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.396 0.604 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.281 0.719 45 H 0.119 0.881 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.827 9.830 9.624 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.118 4.118 4 H 0.106 0.894 5 C -0.157 4.157 6 C -0.163 4.163 7 C -0.175 4.175 8 C 0.058 3.942 9 H 0.109 0.891 10 N -0.398 5.398 11 C 0.399 3.601 12 O -0.452 6.452 13 N -0.324 5.324 14 C -0.036 4.036 15 C -0.084 4.084 16 C -0.235 4.235 17 C 0.094 3.906 18 O -0.107 6.107 19 C -0.546 4.546 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.515 5.515 23 Si 0.919 3.081 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.201 4.201 28 C -0.116 4.116 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.229 0.771 41 H 0.230 0.770 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.091 0.909 45 H 0.137 0.863 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.563 10.421 8.318 26.208 hybrid contribution -2.185 -0.574 1.165 2.542 sum -24.748 9.847 9.482 28.273 Atomic orbital electron populations 1.21783 0.95620 1.01661 1.01853 1.21492 0.95887 0.95824 1.02102 1.22365 0.94061 0.96796 0.98620 0.89447 1.22614 0.98888 0.97548 0.96615 1.22361 0.95227 0.97921 1.00763 1.22633 0.97738 0.97774 0.99372 1.21427 0.91619 0.82021 0.99118 0.89148 1.45347 1.19424 1.24010 1.51005 1.16000 0.81301 0.81778 0.81029 1.90930 1.60715 1.55205 1.38303 1.42306 1.23904 1.22386 1.43797 1.17044 0.85857 0.92397 1.08314 1.20903 0.90893 0.99431 0.97194 1.21127 0.98836 0.95533 1.08011 1.19254 0.87368 0.92050 0.91938 1.83660 1.19466 1.37617 1.70006 1.22199 0.91816 0.89728 1.50820 0.89883 1.26518 0.97100 1.01005 0.94966 1.70584 1.37375 1.01101 1.42474 0.83114 0.74783 0.73125 0.77044 1.19832 1.20719 1.20755 1.19944 0.93529 0.98686 1.07894 1.20315 0.97098 0.93183 1.01047 0.92703 0.92773 0.92647 0.91443 0.92114 0.91475 0.91422 0.91665 0.91528 0.91196 0.91087 0.77146 0.76979 0.85454 0.85160 0.90865 0.86285 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.79 37.16 0.36 -0.44 16 2 C -0.12 -0.71 4.47 -26.73 -0.12 -0.83 16 3 C -0.10 -0.66 2.82 -88.89 -0.25 -0.91 16 4 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.12 -0.68 5.68 -24.67 -0.14 -0.82 16 6 C -0.12 -0.83 6.83 -25.07 -0.17 -1.00 16 7 C -0.14 -1.24 6.59 -25.61 -0.17 -1.41 16 8 C 0.16 1.54 3.10 -66.81 -0.21 1.33 16 9 H 0.09 1.07 7.59 -51.93 -0.39 0.67 16 10 N -0.74 -7.39 4.36 -57.58 -0.25 -7.65 16 11 C 0.70 10.23 8.40 -86.93 -0.73 9.50 16 12 O -0.57 -11.02 13.44 5.28 0.07 -10.95 16 13 N -0.68 -9.43 5.34 -14.18 -0.08 -9.50 16 14 C 0.06 1.04 6.30 -83.62 -0.53 0.51 16 15 C -0.06 -1.34 8.69 -39.42 -0.34 -1.68 16 16 C -0.22 -5.05 9.16 -39.42 -0.36 -5.41 16 17 C 0.15 3.65 6.65 -39.09 -0.26 3.39 16 18 O -0.20 -5.83 9.16 -0.02 0.00 -5.83 16 19 C -0.47 -13.56 9.48 30.87 0.29 -13.26 16 20 H 0.08 2.28 5.20 -52.49 -0.27 2.00 16 21 C 0.01 0.26 5.49 -17.52 -0.10 0.16 16 22 N -0.88 -26.77 13.70 55.48 0.76 -26.01 16 23 Si 1.10 24.31 29.92 -169.99 -5.09 19.23 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 C -0.18 -3.81 9.98 -39.42 -0.39 -4.20 16 28 C -0.10 -1.70 9.96 -39.41 -0.39 -2.09 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.27 7.56 -51.93 -0.39 -0.13 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.33 6.40 -51.93 -0.33 -0.01 16 34 H 0.07 0.37 7.97 -51.93 -0.41 -0.04 16 35 H 0.07 0.34 8.06 -51.93 -0.42 -0.08 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 2.84 6.55 -40.82 -0.27 2.58 16 41 H 0.40 3.95 8.84 -40.82 -0.36 3.59 16 42 H 0.13 2.68 6.22 -52.49 -0.33 2.35 16 43 H 0.13 3.11 5.63 -52.49 -0.30 2.82 16 44 H 0.28 8.70 7.97 -40.82 -0.33 8.37 16 45 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 46 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -33.83 369.66 -9.33 -43.16 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.81 Total: 9.14 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -3.50 Total: -17.16 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.43 Total: -43.16 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.07 Total: -16.78 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.09 Total: 19.23 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.83 -9.33 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319073229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.616 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds