Wall clock time and date at job start Tue Mar 31 2020 12:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50695 * 119.99667 * 2 1 4 4 C 1.52999 * 109.47241 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47421 * 239.99908 * 3 2 1 6 6 C 1.53004 * 109.46818 * 120.00218 * 3 2 1 7 7 N 1.46504 * 109.47013 * 180.02562 * 6 3 2 8 8 C 1.34776 * 119.99835 * 180.02562 * 7 6 3 9 9 O 1.21586 * 120.00194 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.07996 * 120.00201 * 359.97438 * 1 2 3 28 28 H 1.08005 * 119.99837 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00201 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47146 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47246 * 299.99638 * 4 3 2 32 32 H 1.09000 * 109.47042 * 60.00133 * 4 3 2 33 33 H 1.09006 * 109.47360 * 300.00729 * 5 3 2 34 34 H 1.09005 * 109.47359 * 60.00013 * 5 3 2 35 35 H 1.09000 * 109.47655 * 180.02562 * 5 3 2 36 36 H 1.08997 * 109.47025 * 59.99975 * 6 3 2 37 37 H 1.08995 * 109.46911 * 299.99706 * 6 3 2 38 38 H 0.97005 * 119.99925 * 359.97438 * 7 6 3 39 39 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 40 40 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 41 41 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 42 42 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 43 43 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 44 44 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 45 45 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4680 0.0006 5 6 2.9431 1.3863 -1.2492 6 6 2.9431 1.3861 1.2493 7 7 3.6751 2.6552 1.2496 8 6 4.5177 2.9467 2.2602 9 8 4.6701 2.1568 3.1719 10 7 5.1916 4.1140 2.2603 11 6 6.1071 4.4313 3.3591 12 6 6.7281 5.7836 3.1210 13 6 7.9120 5.8851 2.4128 14 6 8.4853 7.1241 2.1927 15 6 7.8734 8.2650 2.6741 16 6 6.6880 8.1659 3.3903 17 8 6.0874 9.2849 3.8699 18 6 6.7531 10.4481 3.7220 19 1 7.6802 10.4731 3.1686 20 6 6.2472 11.6121 4.2803 21 7 5.1182 11.5815 4.9548 22 14 7.1698 13.2235 4.0760 23 1 8.4029 12.9907 3.2819 24 1 6.3049 14.2030 3.3706 25 1 7.5348 13.7579 5.4127 26 6 6.1150 6.9198 3.6103 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.6141 3.4120 0.0011 31 1 0.4422 2.4105 -0.8891 32 1 0.4429 2.4100 0.8909 33 1 3.6514 0.5577 -1.2493 34 1 2.3164 1.3285 -2.1392 35 1 3.4884 2.3300 -1.2490 36 1 3.6514 0.5577 1.2492 37 1 2.3164 1.3283 2.1392 38 1 3.5538 3.2852 0.5221 39 1 5.0697 4.7444 1.5331 40 1 6.8905 3.6750 3.4090 41 1 5.5554 4.4456 4.2990 42 1 8.3896 4.9948 2.0310 43 1 9.4098 7.2001 1.6398 44 1 8.3189 9.2329 2.4975 45 1 4.7646 12.3958 5.3457 46 1 5.1911 6.8398 4.1637 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324638498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:32 Heat of formation + Delta-G solvation = -40.755034 kcal Electronic energy + Delta-G solvation = -25436.787810 eV Core-core repulsion = 21712.674908 eV Total energy + Delta-G solvation = -3724.112902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28388 -40.72794 -39.16959 -38.40407 -35.72891 -35.03842 -34.27973 -32.29058 -31.39420 -30.71305 -28.25570 -28.01247 -27.34390 -26.26030 -23.28320 -23.02366 -22.36586 -21.78094 -20.04076 -19.46171 -18.97055 -18.61187 -17.37012 -16.91520 -16.68690 -16.48620 -16.25905 -16.08013 -15.75604 -15.55434 -15.44599 -15.13077 -14.93838 -14.47839 -14.33000 -14.23622 -13.90440 -13.69317 -13.36647 -13.08906 -13.02795 -12.85078 -12.60700 -12.55366 -12.34894 -12.26930 -12.08409 -12.06003 -11.81178 -11.56263 -11.40325 -11.19857 -10.81897 -10.39325 -10.26570 -9.78191 -9.75132 -9.02975 -8.46986 -6.15366 0.37289 0.71014 1.35977 1.36796 1.43886 1.54074 1.86192 2.15163 2.17490 2.81991 3.13181 3.36536 3.45499 3.74749 3.81248 3.84327 3.92462 4.10469 4.28526 4.31940 4.43481 4.46130 4.53984 4.64099 4.66894 4.72341 4.75013 4.81674 4.89084 4.97167 5.02729 5.04773 5.12445 5.14460 5.26471 5.34733 5.37614 5.41738 5.49721 5.63015 5.71344 5.72834 5.76868 5.90236 5.98039 6.02545 6.17642 6.97991 7.06066 7.56276 7.78594 8.76351 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002175 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.541744 B =12872.458224 C =13580.706801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C -0.042 4.042 4 C -0.147 4.147 5 C -0.137 4.137 6 C 0.155 3.845 7 N -0.730 5.730 8 C 0.701 3.299 9 O -0.636 6.636 10 N -0.730 5.730 11 C 0.194 3.806 12 C -0.057 4.057 13 C -0.167 4.167 14 C -0.070 4.070 15 C -0.233 4.233 16 C 0.112 3.888 17 O -0.232 6.232 18 C -0.411 4.411 19 H 0.104 0.896 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.249 1.249 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.180 4.180 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.408 0.592 39 H 0.408 0.592 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.148 0.852 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.272 0.728 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -19.094 -14.633 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.173 4.173 3 C -0.042 4.042 4 C -0.204 4.204 5 C -0.194 4.194 6 C 0.031 3.969 7 N -0.387 5.387 8 C 0.401 3.599 9 O -0.518 6.518 10 N -0.385 5.385 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.186 4.186 14 C -0.087 4.087 15 C -0.253 4.253 16 C 0.061 3.939 17 O -0.139 6.139 18 C -0.487 4.487 19 H 0.121 0.879 20 C -0.222 4.222 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.172 1.172 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.200 4.200 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.246 0.754 39 H 0.244 0.756 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.166 0.834 43 H 0.167 0.833 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.167 -19.658 -13.586 24.105 hybrid contribution -0.073 1.537 -0.147 1.546 sum -3.240 -18.121 -13.733 22.966 Atomic orbital electron populations 1.24188 0.96050 1.02916 0.99464 1.22810 0.96092 0.97175 1.01178 1.19848 0.95204 0.94706 0.94466 1.21996 0.98880 0.97035 1.02505 1.21826 0.99139 1.02388 0.96067 1.21161 0.93667 0.84448 0.97632 1.45030 1.46117 1.22582 1.25017 1.16078 0.79308 0.81896 0.82655 1.90890 1.70837 1.51082 1.39023 1.45052 1.46792 1.19344 1.27332 1.19854 0.91964 0.92069 0.89142 1.19430 0.95698 0.92510 0.98154 1.20999 0.96495 0.98081 1.02985 1.21162 0.99265 0.91187 0.97123 1.21371 0.98004 1.00496 1.05405 1.19858 0.92693 0.87892 0.93419 1.83950 1.44438 1.13894 1.71636 1.21866 1.07619 0.83408 1.35823 0.87854 1.26593 0.97426 1.02922 0.95262 1.70191 1.20892 1.30171 1.34693 0.84527 0.78058 0.74889 0.78728 1.17248 1.19419 1.19604 1.20221 1.02396 0.89923 1.07479 0.87555 0.87513 0.86639 0.92184 0.90886 0.92640 0.92216 0.91383 0.91948 0.92157 0.93143 0.75418 0.75632 0.89753 0.92320 0.83409 0.83316 0.86173 0.91902 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 13.70 67.78 0.93 -1.16 16 2 C -0.15 -1.85 8.76 25.64 0.22 -1.63 16 3 C -0.04 -0.52 0.75 -52.93 -0.04 -0.56 16 4 C -0.15 -1.76 6.95 71.98 0.50 -1.26 16 5 C -0.14 -1.43 8.28 71.98 0.60 -0.83 16 6 C 0.16 2.81 4.55 86.38 0.39 3.21 16 7 N -0.73 -13.99 4.96 -478.53 -2.37 -16.37 16 8 C 0.70 18.89 8.57 179.05 1.53 20.42 16 9 O -0.64 -22.65 16.34 -3.99 -0.07 -22.72 16 10 N -0.73 -17.99 5.55 -482.30 -2.68 -20.67 16 11 C 0.19 5.42 5.80 85.63 0.50 5.91 16 12 C -0.06 -1.81 5.25 -19.88 -0.10 -1.91 16 13 C -0.17 -4.67 9.70 22.30 0.22 -4.46 16 14 C -0.07 -2.15 10.04 22.25 0.22 -1.92 16 15 C -0.23 -9.51 9.17 22.39 0.21 -9.31 16 16 C 0.11 5.33 6.65 22.58 0.15 5.48 16 17 O -0.23 -13.68 9.76 -22.74 -0.22 -13.90 16 18 C -0.41 -23.40 9.49 67.92 0.64 -22.76 16 19 H 0.10 5.35 5.21 -2.91 -0.02 5.34 16 20 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 21 N -0.92 -56.14 13.67 21.61 0.30 -55.84 16 22 Si 1.02 42.15 29.55 68.60 2.03 44.18 16 23 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 C -0.18 -7.37 9.65 22.39 0.22 -7.15 16 27 H 0.11 1.11 5.69 -2.91 -0.02 1.10 16 28 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 29 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.06 0.70 6.86 -2.38 -0.02 0.69 16 31 H 0.07 0.73 7.50 -2.39 -0.02 0.71 16 32 H 0.05 0.75 7.50 -2.39 -0.02 0.73 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 0.60 6.86 -2.39 -0.02 0.59 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.41 5.72 6.18 -92.70 -0.57 5.15 16 39 H 0.41 8.51 8.48 -92.71 -0.79 7.72 16 40 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 41 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 42 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 44 H 0.12 5.00 5.64 -2.91 -0.02 4.98 16 45 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 46 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -74.23 381.18 3.27 -70.96 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: -0.36 Total: 33.21 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 6.65 Total: -18.85 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -4.76 Total: -92.88 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.29 Total: -36.62 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -74.23 3.27 -70.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324638498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.202 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds