Wall clock time and date at job start Tue Mar 31 2020 12:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 C 1.52993 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47203 * 304.99676 * 4 3 2 6 6 N 1.46500 * 109.47545 * 64.99537 * 4 3 2 7 7 C 1.34772 * 120.00341 * 275.00706 * 6 4 3 8 8 O 1.21352 * 119.99925 * 359.97438 * 7 6 4 9 9 C 1.49449 * 120.00459 * 179.97438 * 7 6 4 10 10 O 1.21352 * 119.99616 * 359.97438 * 9 7 6 11 11 N 1.34772 * 120.00459 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00341 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47284 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47073 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00188 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99767 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00230 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46895 * 59.99930 * 18 16 14 20 20 H 1.48494 * 109.47333 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46786 * 300.00075 * 18 16 14 22 22 C 1.50702 * 109.47442 * 185.00169 * 4 3 2 23 23 C 1.38234 * 120.00271 * 99.99361 * 22 4 3 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 4 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 279.97488 * 22 4 3 28 28 H 1.08993 * 109.47233 * 299.99902 * 1 2 3 29 29 H 1.08998 * 109.47088 * 60.00544 * 1 2 3 30 30 H 1.08999 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46904 * 239.99888 * 2 1 3 32 32 H 1.08996 * 109.46926 * 119.99973 * 2 1 3 33 33 H 1.08999 * 109.46908 * 59.99561 * 3 2 1 34 34 H 1.09010 * 109.46815 * 300.00055 * 3 2 1 35 35 H 0.96999 * 119.99648 * 95.00007 * 6 4 3 36 36 H 0.96999 * 120.00011 * 359.97438 * 11 9 7 37 37 H 1.09005 * 109.46472 * 299.99570 * 12 11 9 38 38 H 1.09003 * 109.47228 * 59.99083 * 12 11 9 39 39 H 1.09000 * 109.47145 * 299.99841 * 13 12 11 40 40 H 1.08999 * 109.47231 * 59.99936 * 13 12 11 41 41 H 0.97001 * 120.00002 * 179.97438 * 17 16 14 42 42 H 1.08001 * 119.99769 * 359.97438 * 23 22 4 43 43 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 45 45 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00489 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8531 0.8410 6 7 4.0579 0.8590 -1.2527 7 6 4.1865 -0.4776 -1.3681 8 8 3.8987 -1.1977 -0.4347 9 6 4.6838 -1.0730 -2.6455 10 8 4.9712 -0.3529 -3.5790 11 7 4.8129 -2.4096 -2.7607 12 6 5.3009 -2.9932 -4.0127 13 6 5.3536 -4.5163 -3.8790 14 6 5.8549 -5.1167 -5.1671 15 1 6.1100 -4.4759 -5.9982 16 6 5.9879 -6.4840 -5.2846 17 7 5.6769 -7.2643 -4.2727 18 14 6.6101 -7.2281 -6.8811 19 1 7.9706 -6.7090 -7.1721 20 1 6.6611 -8.7065 -6.7513 21 1 5.6924 -6.8604 -7.9892 22 6 4.0723 2.8580 0.1232 23 6 4.4991 3.3352 1.3484 24 6 4.9604 4.6334 1.4618 25 6 4.9954 5.4541 0.3500 26 6 4.5696 4.9765 -0.8753 27 6 4.1067 3.6789 -0.9885 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 4.2882 1.4346 -1.9986 36 1 4.5835 -2.9851 -2.0144 37 1 4.6277 -2.7226 -4.8262 38 1 6.2998 -2.6126 -4.2260 39 1 6.0269 -4.7866 -3.0655 40 1 4.3548 -4.8971 -3.6656 41 1 5.7701 -8.2262 -4.3556 42 1 4.4721 2.6939 2.2169 43 1 5.2943 5.0062 2.4188 44 1 5.3517 6.4697 0.4395 45 1 4.5966 5.6178 -1.7439 46 1 3.7731 3.3061 -1.9456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325393297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:48 Heat of formation + Delta-G solvation = -67.793403 kcal Electronic energy + Delta-G solvation = -25895.217598 eV Core-core repulsion = 22169.932224 eV Total energy + Delta-G solvation = -3725.285374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83701 -39.62383 -38.35484 -36.31803 -35.09690 -33.75811 -32.85904 -31.74347 -31.19873 -29.81675 -28.51861 -25.82269 -24.61871 -23.46390 -22.92790 -21.54339 -21.08766 -20.70642 -20.11930 -18.46126 -17.10605 -16.91577 -16.42634 -16.05962 -15.62984 -15.49678 -14.99414 -14.88082 -14.75657 -14.48354 -14.20672 -13.76017 -13.67392 -13.57572 -13.35539 -13.06584 -12.91176 -12.56248 -12.31904 -11.97157 -11.88640 -11.59552 -11.38145 -11.34444 -11.22921 -11.04846 -10.86491 -10.69435 -10.68351 -10.39051 -9.79815 -9.48170 -9.38268 -9.27570 -9.19161 -9.03383 -8.69427 -8.41600 -6.10099 -4.13884 0.94052 1.04732 1.62099 2.54214 3.30550 3.34756 3.37381 3.40306 3.45680 3.89750 4.16499 4.40242 4.50944 4.63445 4.74359 4.76716 4.81149 4.85361 5.00837 5.10665 5.16936 5.26652 5.27571 5.43770 5.50020 5.58459 5.65104 5.73239 5.73691 6.00614 6.03744 6.10092 6.12088 6.16815 6.18023 6.23706 6.29198 6.34961 6.59622 6.62095 6.69383 7.06113 7.46545 7.57769 7.66964 7.87009 7.93438 8.21341 8.34298 8.91462 9.50956 11.01312 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.002356 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.373200 B =11881.535991 C =12755.264459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.124 4.124 4 C 0.184 3.816 5 H 0.101 0.899 6 N -0.700 5.700 7 C 0.509 3.491 8 O -0.513 6.513 9 C 0.496 3.504 10 O -0.534 6.534 11 N -0.685 5.685 12 C 0.119 3.881 13 C 0.012 3.988 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.092 4.092 23 C -0.106 4.106 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.115 4.115 27 C -0.112 4.112 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.411 0.589 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.263 0.737 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 24.314 12.570 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.162 4.162 4 C 0.080 3.920 5 H 0.119 0.881 6 N -0.355 5.355 7 C 0.291 3.709 8 O -0.388 6.388 9 C 0.276 3.724 10 O -0.412 6.412 11 N -0.336 5.336 12 C -0.003 4.003 13 C -0.026 4.026 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.130 4.130 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.248 0.752 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.287 24.067 12.614 27.890 hybrid contribution 0.361 -0.438 -0.849 1.021 sum -5.926 23.630 11.765 27.053 Atomic orbital electron populations 1.21785 0.96179 1.01707 1.01239 1.21621 0.95205 0.95621 1.03461 1.22059 0.93138 0.98258 1.02764 1.19972 0.94230 0.90083 0.87700 0.88112 1.45894 1.66043 1.06706 1.16812 1.20396 0.78616 0.83072 0.88854 1.90764 1.47904 1.60284 1.39876 1.19997 0.80491 0.84150 0.87805 1.90729 1.50042 1.60438 1.40007 1.46224 1.62989 1.05597 1.18817 1.21933 0.98440 0.97070 0.82846 1.19347 0.98215 0.86649 0.98383 1.20973 1.44770 0.91827 0.98701 0.92230 1.25001 0.95276 0.97222 0.96764 1.69948 1.47994 1.04410 1.30714 0.86556 0.79487 0.77902 0.83483 1.20096 1.21231 1.20102 1.19893 0.99956 0.95103 0.94283 1.21012 0.98438 0.96105 0.96918 1.21150 0.99639 0.93938 0.98830 1.21207 0.99744 0.99873 0.92956 1.21163 0.98677 0.95667 0.97817 1.20996 0.99715 0.94033 0.98248 0.93064 0.93090 0.92626 0.91672 0.91160 0.90736 0.91465 0.75178 0.75383 0.91883 0.91896 0.95673 0.95673 0.92712 0.85687 0.85848 0.86014 0.85785 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.32 4.54 -26.73 -0.12 -1.44 16 3 C -0.12 -1.12 4.87 -26.74 -0.13 -1.25 16 4 C 0.18 1.79 2.46 -69.08 -0.17 1.62 16 5 H 0.10 1.06 7.44 -51.93 -0.39 0.67 16 6 N -0.70 -8.06 4.97 -55.37 -0.28 -8.34 16 7 C 0.51 7.38 6.46 -11.59 -0.07 7.31 16 8 O -0.51 -8.04 13.62 5.49 0.07 -7.97 16 9 C 0.50 8.47 7.89 -11.59 -0.09 8.38 16 10 O -0.53 -10.07 16.48 5.49 0.09 -9.98 16 11 N -0.69 -12.39 5.55 -60.73 -0.34 -12.73 16 12 C 0.12 2.48 5.61 -4.04 -0.02 2.45 16 13 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 C -0.09 -0.80 4.95 -104.62 -0.52 -1.32 16 23 C -0.11 -0.84 9.67 -39.59 -0.38 -1.22 16 24 C -0.12 -0.84 10.05 -39.59 -0.40 -1.24 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 27 C -0.11 -0.93 9.06 -39.58 -0.36 -1.29 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.85 5.64 -51.93 -0.29 0.56 16 32 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 35 H 0.41 4.46 6.34 -40.82 -0.26 4.20 16 36 H 0.41 7.05 7.94 -40.82 -0.32 6.73 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.13 0.82 8.04 -52.49 -0.42 0.40 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.93 6.92 -52.49 -0.36 0.56 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -30.89 383.64 -9.27 -40.16 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.07 Total: 6.75 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -3.25 Total: -4.56 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.12 Total: -46.42 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.17 Total: -17.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.89 -9.27 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325393297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.637 kcal (2) G-P(sol) polarization free energy of solvation -30.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds