Wall clock time and date at job start Tue Mar 31 2020 12:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 C 1.52993 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47203 * 304.99676 * 4 3 2 6 6 N 1.46500 * 109.47545 * 64.99537 * 4 3 2 7 7 C 1.34772 * 120.00341 * 275.00706 * 6 4 3 8 8 O 1.21352 * 119.99925 * 359.97438 * 7 6 4 9 9 C 1.49449 * 120.00459 * 179.97438 * 7 6 4 10 10 O 1.21352 * 119.99616 * 359.97438 * 9 7 6 11 11 N 1.34772 * 120.00459 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00341 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47284 * 179.97438 * 12 11 9 14 14 C 1.50700 * 109.47073 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00188 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99767 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00230 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46895 * 59.99930 * 18 16 14 20 20 H 1.48494 * 109.47333 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46786 * 300.00075 * 18 16 14 22 22 C 1.50702 * 109.47442 * 185.00169 * 4 3 2 23 23 C 1.38234 * 120.00271 * 99.99361 * 22 4 3 24 24 C 1.38230 * 119.99880 * 179.97438 * 23 22 4 25 25 C 1.38235 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99485 * 279.97488 * 22 4 3 28 28 H 1.08993 * 109.47233 * 299.99902 * 1 2 3 29 29 H 1.08998 * 109.47088 * 60.00544 * 1 2 3 30 30 H 1.08999 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46904 * 239.99888 * 2 1 3 32 32 H 1.08996 * 109.46926 * 119.99973 * 2 1 3 33 33 H 1.08999 * 109.46908 * 59.99561 * 3 2 1 34 34 H 1.09010 * 109.46815 * 300.00055 * 3 2 1 35 35 H 0.96999 * 119.99648 * 95.00007 * 6 4 3 36 36 H 0.96999 * 120.00011 * 359.97438 * 11 9 7 37 37 H 1.09005 * 109.46472 * 299.99570 * 12 11 9 38 38 H 1.09003 * 109.47228 * 59.99083 * 12 11 9 39 39 H 1.09000 * 109.47145 * 299.99841 * 13 12 11 40 40 H 1.08999 * 109.47231 * 59.99936 * 13 12 11 41 41 H 0.97001 * 120.00002 * 179.97438 * 17 16 14 42 42 H 1.08001 * 119.99769 * 359.97438 * 23 22 4 43 43 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 45 45 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00489 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9337 0.8531 0.8410 6 7 4.0579 0.8590 -1.2527 7 6 4.1865 -0.4776 -1.3681 8 8 3.8987 -1.1977 -0.4347 9 6 4.6838 -1.0730 -2.6455 10 8 4.9712 -0.3529 -3.5790 11 7 4.8129 -2.4096 -2.7607 12 6 5.3009 -2.9932 -4.0127 13 6 5.3536 -4.5163 -3.8790 14 6 5.8549 -5.1167 -5.1671 15 1 6.1100 -4.4759 -5.9982 16 6 5.9879 -6.4840 -5.2846 17 7 5.6769 -7.2643 -4.2727 18 14 6.6101 -7.2281 -6.8811 19 1 7.9706 -6.7090 -7.1721 20 1 6.6611 -8.7065 -6.7513 21 1 5.6924 -6.8604 -7.9892 22 6 4.0723 2.8580 0.1232 23 6 4.4991 3.3352 1.3484 24 6 4.9604 4.6334 1.4618 25 6 4.9954 5.4541 0.3500 26 6 4.5696 4.9765 -0.8753 27 6 4.1067 3.6789 -0.9885 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8901 35 1 4.2882 1.4346 -1.9986 36 1 4.5835 -2.9851 -2.0144 37 1 4.6277 -2.7226 -4.8262 38 1 6.2998 -2.6126 -4.2260 39 1 6.0269 -4.7866 -3.0655 40 1 4.3548 -4.8971 -3.6656 41 1 5.7701 -8.2262 -4.3556 42 1 4.4721 2.6939 2.2169 43 1 5.2943 5.0062 2.4188 44 1 5.3517 6.4697 0.4395 45 1 4.5966 5.6178 -1.7439 46 1 3.7731 3.3061 -1.9456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325393297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:47 Heat of formation + Delta-G solvation = -86.529950 kcal Electronic energy + Delta-G solvation = -25896.030075 eV Core-core repulsion = 22169.932224 eV Total energy + Delta-G solvation = -3726.097851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95715 -40.52052 -39.51834 -37.29166 -36.69950 -34.94020 -34.57407 -32.49464 -31.77065 -31.69405 -29.28027 -27.44950 -25.81729 -24.58483 -23.64005 -22.83227 -22.26326 -21.67321 -21.26777 -19.68390 -18.58763 -17.98486 -17.72266 -17.29216 -16.81400 -16.52968 -16.22491 -16.17149 -15.89417 -15.65289 -15.27869 -14.97429 -14.72182 -14.32452 -14.29825 -14.25740 -14.11568 -13.71010 -13.34769 -13.26985 -12.93309 -12.87015 -12.67549 -12.56666 -12.51036 -12.27874 -12.20555 -11.92357 -11.69239 -11.60883 -11.54154 -11.45611 -10.70025 -10.61410 -10.34143 -10.20748 -9.83156 -9.67579 -8.23678 -6.35083 0.30626 0.36768 0.48886 1.33118 1.43419 1.45253 1.53458 2.12429 2.39543 2.65928 2.87771 3.11115 3.41681 3.46652 3.89258 3.99687 4.11072 4.15380 4.21011 4.31849 4.37937 4.39169 4.44002 4.61595 4.65402 4.67335 4.75571 4.80131 4.89982 4.96070 5.05330 5.07108 5.09737 5.16708 5.24996 5.32680 5.41414 5.47216 5.54117 5.54681 5.62619 5.62891 5.75095 5.93039 6.08574 6.12410 6.34527 6.69970 6.79097 6.92557 7.34412 8.88108 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.002356 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.373200 B =11881.535991 C =12755.264459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.187 3.813 5 H 0.093 0.907 6 N -0.684 5.684 7 C 0.517 3.483 8 O -0.527 6.527 9 C 0.498 3.502 10 O -0.551 6.551 11 N -0.688 5.688 12 C 0.138 3.862 13 C 0.020 3.980 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.124 4.124 27 C -0.123 4.123 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.415 0.585 36 H 0.415 0.585 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.266 0.734 42 H 0.135 0.865 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 26.277 12.575 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.154 4.154 4 C 0.084 3.916 5 H 0.111 0.889 6 N -0.338 5.338 7 C 0.297 3.703 8 O -0.403 6.403 9 C 0.279 3.721 10 O -0.429 6.429 11 N -0.339 5.339 12 C 0.015 3.985 13 C -0.018 4.018 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.192 1.192 22 C -0.104 4.104 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.142 4.142 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.254 0.746 36 H 0.251 0.749 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.236 26.078 12.631 29.639 hybrid contribution 0.337 -0.953 -0.794 1.285 sum -5.900 25.124 11.837 28.393 Atomic orbital electron populations 1.21762 0.95057 1.01608 1.02214 1.21571 0.96232 0.96417 1.01623 1.22008 0.92439 0.97155 1.03837 1.20058 0.94727 0.90676 0.86177 0.88863 1.45893 1.64667 1.05512 1.17733 1.19839 0.78973 0.83991 0.87511 1.90769 1.48904 1.60807 1.39860 1.20416 0.79626 0.83466 0.88631 1.90713 1.50619 1.60675 1.40931 1.46056 1.63421 1.06335 1.18063 1.21473 0.98430 0.94550 0.84016 1.19164 0.96472 0.89186 0.96976 1.21420 1.44786 0.92479 0.99741 0.91719 1.25923 0.95376 0.97771 1.00333 1.70069 1.49053 1.04746 1.32862 0.85460 0.79217 0.76985 0.79155 1.19175 1.20838 1.19172 1.19811 1.01185 0.94333 0.95023 1.21218 0.98370 0.96827 0.96962 1.21448 0.99085 0.93588 0.99894 1.21538 0.98982 1.00885 0.92671 1.21425 0.98390 0.95550 0.98784 1.21126 1.00184 0.94591 0.98277 0.91478 0.92676 0.93319 0.94212 0.92297 0.88943 0.90997 0.74644 0.74905 0.92060 0.92111 0.97443 0.97427 0.92554 0.84715 0.83852 0.83945 0.84255 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.12 -2.57 4.54 30.59 0.14 -2.44 16 3 C -0.12 -1.96 4.87 30.59 0.15 -1.81 16 4 C 0.19 3.47 2.46 44.24 0.11 3.58 16 5 H 0.09 1.91 7.44 -2.39 -0.02 1.89 16 6 N -0.68 -15.43 4.97 -447.44 -2.22 -17.65 16 7 C 0.52 14.98 6.46 87.27 0.56 15.54 16 8 O -0.53 -16.67 13.62 -3.25 -0.04 -16.72 16 9 C 0.50 17.06 7.89 87.27 0.69 17.74 16 10 O -0.55 -20.64 16.48 -3.25 -0.05 -20.69 16 11 N -0.69 -25.27 5.55 -464.41 -2.58 -27.84 16 12 C 0.14 5.84 5.61 86.38 0.48 6.32 16 13 C 0.02 0.99 5.09 29.85 0.15 1.14 16 14 C -0.55 -30.26 9.11 25.60 0.23 -30.02 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 16 C 0.00 0.27 5.46 84.65 0.46 0.73 16 17 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 18 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 C -0.10 -1.66 4.95 -19.87 -0.10 -1.76 16 23 C -0.12 -1.63 9.67 22.27 0.22 -1.42 16 24 C -0.12 -1.46 10.05 22.27 0.22 -1.24 16 25 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 26 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 27 C -0.12 -1.88 9.06 22.27 0.20 -1.68 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 1.05 5.64 -2.39 -0.01 1.03 16 32 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.42 8.73 6.34 -92.71 -0.59 8.14 16 36 H 0.41 14.64 7.94 -92.71 -0.74 13.90 16 37 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 38 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.13 1.55 8.04 -2.91 -0.02 1.52 16 43 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.14 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.13 1.75 6.92 -2.91 -0.02 1.73 16 Total: -1.00 -65.71 383.64 1.76 -63.95 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.34 Total: 28.06 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 4.68 Total: 0.13 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -4.52 Total: -100.21 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.10 Total: -37.41 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.71 1.76 -63.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325393297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.585 kcal (2) G-P(sol) polarization free energy of solvation -65.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds