Wall clock time and date at job start Tue Mar 31 2020 13:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46800 * 2 1 4 4 H 1.09001 * 110.00073 * 44.71735 * 3 2 1 5 5 C 1.54329 * 109.87918 * 165.80595 * 3 2 1 6 6 C 1.55162 * 102.93722 * 141.61169 * 5 3 2 7 7 C 1.55128 * 101.48813 * 324.33391 * 6 5 3 8 8 H 1.08999 * 110.49611 * 278.45379 * 7 6 5 9 9 C 1.52999 * 110.34246 * 156.06324 * 7 6 5 10 10 N 1.47016 * 109.88647 * 283.61951 * 3 2 1 11 11 C 1.34774 * 125.65007 * 61.60290 * 10 3 2 12 12 O 1.21588 * 120.00307 * 194.05439 * 11 10 3 13 13 N 1.34774 * 119.99800 * 14.05788 * 11 10 3 14 14 C 1.40034 * 119.99940 * 179.63531 * 13 11 10 15 15 C 1.38914 * 119.99554 * 214.82545 * 14 13 11 16 16 C 1.38007 * 119.99142 * 180.02562 * 15 14 13 17 17 C 1.38897 * 120.00809 * 0.02562 * 16 15 14 18 18 O 1.35783 * 120.00428 * 179.97438 * 17 16 15 19 19 C 1.34813 * 116.99948 * 5.39885 * 18 17 16 20 20 H 1.08002 * 119.99670 * 354.98271 * 19 18 17 21 21 C 1.38624 * 120.00171 * 174.70161 * 19 18 17 22 22 N 1.31571 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47480 * 90.00137 * 23 21 19 25 25 H 1.48502 * 109.47382 * 210.00170 * 23 21 19 26 26 H 1.48505 * 109.47345 * 329.99971 * 23 21 19 27 27 C 1.38906 * 119.99799 * 0.22888 * 17 16 15 28 28 C 1.38005 * 120.00325 * 359.49185 * 27 17 16 29 29 H 1.09003 * 109.47289 * 78.87236 * 1 2 3 30 30 H 1.09001 * 109.46958 * 198.87330 * 1 2 3 31 31 H 1.09002 * 109.47375 * 318.86951 * 1 2 3 32 32 H 1.08996 * 109.47192 * 240.00304 * 2 1 3 33 33 H 1.09001 * 109.47093 * 119.99748 * 2 1 3 34 34 H 1.08990 * 110.72200 * 259.97263 * 5 3 2 35 35 H 1.08997 * 110.72224 * 23.25348 * 5 3 2 36 36 H 1.08999 * 111.00350 * 82.57752 * 6 5 3 37 37 H 1.09000 * 111.00108 * 206.38690 * 6 5 3 38 38 H 1.09001 * 109.46772 * 305.29358 * 9 7 6 39 39 H 1.08995 * 109.47508 * 65.29516 * 9 7 6 40 40 H 1.09002 * 109.46973 * 185.30252 * 9 7 6 41 41 H 0.97000 * 120.00071 * 359.62363 * 13 11 10 42 42 H 1.07994 * 120.00403 * 0.03581 * 15 14 13 43 43 H 1.08003 * 119.99479 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99994 * 180.02562 * 22 21 19 45 45 H 1.08007 * 119.99820 * 179.75013 * 27 17 16 46 46 H 1.07996 * 120.00917 * 180.27605 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4780 2.0366 0.7207 5 6 3.5414 1.4684 0.3559 6 6 4.0996 2.5786 -0.5733 7 6 3.2391 2.3762 -1.8480 8 1 3.6418 1.5659 -2.4557 9 6 3.1775 3.6718 -2.6595 10 7 1.8997 2.0225 -1.3436 11 6 0.7394 2.1966 -2.0068 12 8 0.7507 2.4436 -3.1973 13 7 -0.4334 2.0969 -1.3504 14 6 -1.6388 2.2853 -2.0379 15 6 -2.7150 2.8893 -1.4002 16 6 -3.9030 3.0744 -2.0776 17 6 -4.0228 2.6565 -3.3968 18 8 -5.1919 2.8382 -4.0631 19 6 -6.1584 3.5293 -3.4261 20 1 -6.0144 3.8398 -2.4017 21 6 -7.3346 3.8463 -4.0876 22 7 -7.5080 3.4724 -5.3371 23 14 -8.6735 4.8045 -3.2052 24 1 -8.4579 6.2594 -3.4098 25 1 -9.9997 4.4190 -3.7509 26 1 -8.6273 4.4967 -1.7531 27 6 -2.9483 2.0478 -4.0328 28 6 -1.7584 1.8678 -3.3574 29 1 -0.3634 0.1983 -1.0084 30 1 -0.3633 -0.9724 0.3324 31 1 -0.3634 0.7741 0.6760 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6850 1.7337 1.4032 35 1 4.0072 0.5085 0.1327 36 1 3.9386 3.5666 -0.1419 37 1 5.1560 2.4151 -0.7864 38 1 2.8209 4.4821 -2.0236 39 1 4.1723 3.9142 -3.0331 40 1 2.4953 3.5423 -3.4996 41 1 -0.4427 1.8945 -0.4018 42 1 -2.6220 3.2140 -0.3744 43 1 -4.7396 3.5443 -1.5820 44 1 -8.3308 3.6946 -5.8001 45 1 -3.0428 1.7192 -5.0573 46 1 -0.9216 1.3986 -3.8532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337130747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:36 Heat of formation + Delta-G solvation = -4.746036 kcal Electronic energy + Delta-G solvation = -27091.868089 eV Core-core repulsion = 23369.316655 eV Total energy + Delta-G solvation = -3722.551435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.99158 -39.07848 -37.98668 -36.41415 -35.01266 -33.08263 -32.17273 -31.57129 -30.45355 -30.14273 -27.71470 -25.97530 -25.28780 -23.28722 -22.75955 -22.00667 -21.56855 -20.80462 -19.19740 -18.04353 -17.79683 -17.22621 -16.81094 -16.11330 -15.30197 -14.83359 -14.52162 -14.31988 -14.14674 -14.01464 -13.87326 -13.53256 -13.44775 -13.41732 -13.10054 -12.78861 -12.73570 -12.50014 -12.13563 -11.96163 -11.76858 -11.71549 -11.53765 -11.38022 -11.19057 -11.10292 -11.03139 -10.90323 -10.84475 -10.66444 -10.42007 -9.69091 -9.47094 -9.15435 -8.74870 -8.56045 -8.13887 -6.81769 -6.39737 -3.97776 2.22132 2.29245 2.64939 3.14659 3.16203 3.20882 3.33434 3.96809 4.01178 4.18049 4.34389 4.46674 4.65186 4.73042 4.83100 4.92264 5.03071 5.14211 5.17794 5.23608 5.37825 5.39369 5.40071 5.48187 5.53425 5.60985 5.62791 5.71491 5.75792 5.84523 5.94833 6.00337 6.07984 6.10739 6.19635 6.27665 6.39932 6.47164 6.82733 6.91686 7.00656 7.18611 7.29182 7.34921 7.48728 7.86735 8.04719 8.09526 8.77370 9.05804 9.77429 10.78511 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002720 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.780438 B =10291.935142 C =10622.865473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.136 4.136 3 C 0.128 3.872 4 H 0.071 0.929 5 C -0.126 4.126 6 C -0.131 4.131 7 C 0.155 3.845 8 H 0.072 0.928 9 C -0.169 4.169 10 N -0.635 5.635 11 C 0.720 3.280 12 O -0.570 6.570 13 N -0.678 5.678 14 C 0.055 3.945 15 C -0.094 4.094 16 C -0.218 4.218 17 C 0.145 3.855 18 O -0.179 6.179 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.177 4.177 28 C -0.067 4.067 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.402 0.598 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.269 0.731 45 H 0.120 0.880 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.602 -4.362 14.130 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.174 4.174 3 C 0.024 3.976 4 H 0.089 0.911 5 C -0.164 4.164 6 C -0.169 4.169 7 C 0.052 3.948 8 H 0.090 0.910 9 C -0.226 4.226 10 N -0.375 5.375 11 C 0.423 3.577 12 O -0.446 6.446 13 N -0.332 5.332 14 C -0.038 4.038 15 C -0.115 4.115 16 C -0.238 4.238 17 C 0.091 3.909 18 O -0.082 6.082 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.197 4.197 28 C -0.088 4.088 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.244 0.756 42 H 0.126 0.874 43 H 0.148 0.852 44 H 0.079 0.921 45 H 0.138 0.862 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 21.284 -4.214 12.824 25.204 hybrid contribution -0.689 0.445 1.142 1.406 sum 20.595 -3.770 13.966 25.168 Atomic orbital electron populations 1.22539 0.95515 1.01848 1.04021 1.22034 0.96612 0.95986 1.02783 1.21752 0.97142 0.93894 0.84830 0.91132 1.22657 0.93619 0.99833 1.00257 1.22931 0.99466 0.99356 0.95154 1.21698 0.80998 0.97390 0.94713 0.91024 1.22155 1.02671 0.95853 1.01938 1.47728 1.05158 1.66744 1.17854 1.15435 0.79376 0.78119 0.84730 1.90881 1.85461 1.55441 1.12855 1.43390 1.03402 1.73609 1.12785 1.17070 0.85194 1.07651 0.93855 1.20432 0.92988 0.99034 0.99039 1.20940 0.98542 1.08926 0.95395 1.19394 0.87182 0.93529 0.90750 1.83994 1.18417 1.64415 1.41396 1.21298 0.94390 1.33485 0.97513 0.89151 1.25270 0.97947 0.97532 0.95827 1.70047 1.26526 1.43473 1.09836 0.85728 0.79362 0.79371 0.79042 1.19940 1.20313 1.19248 1.20143 0.91636 1.07316 1.00566 1.20689 0.96480 0.98433 0.93157 0.89656 0.92194 0.92656 0.91095 0.90869 0.90051 0.90314 0.90476 0.89869 0.92791 0.92041 0.89347 0.75593 0.87449 0.85197 0.92087 0.86224 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.13 37.16 0.30 -1.40 16 2 C -0.14 -1.07 5.38 -26.73 -0.14 -1.22 16 3 C 0.13 1.04 2.80 -66.95 -0.19 0.86 16 4 H 0.07 0.55 7.54 -51.93 -0.39 0.16 16 5 C -0.13 -0.72 6.43 -24.89 -0.16 -0.88 16 6 C -0.13 -0.85 6.51 -24.46 -0.16 -1.01 16 7 C 0.16 1.53 3.72 -66.30 -0.25 1.29 16 8 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 9 C -0.17 -1.87 8.91 37.16 0.33 -1.54 16 10 N -0.63 -7.31 2.98 -161.10 -0.48 -7.79 16 11 C 0.72 11.17 7.13 -86.92 -0.62 10.55 16 12 O -0.57 -10.94 12.02 5.29 0.06 -10.88 16 13 N -0.68 -10.06 3.05 -14.18 -0.04 -10.10 16 14 C 0.06 1.02 6.19 -83.61 -0.52 0.50 16 15 C -0.09 -1.75 9.96 -39.42 -0.39 -2.14 16 16 C -0.22 -4.78 9.16 -39.42 -0.36 -5.14 16 17 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 18 O -0.18 -5.19 9.76 -0.01 0.00 -5.19 16 19 C -0.39 -11.03 9.48 30.87 0.29 -10.74 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.71 13.67 55.48 0.76 -24.96 16 23 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.18 -3.99 9.98 -39.42 -0.39 -4.38 16 28 C -0.07 -1.37 8.66 -39.42 -0.34 -1.71 16 29 H 0.08 1.06 5.40 -51.93 -0.28 0.78 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.46 6.24 -51.93 -0.32 0.14 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 36 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.30 5.98 -51.93 -0.31 0.98 16 41 H 0.40 4.84 4.22 -40.82 -0.17 4.67 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.81 5.63 -52.48 -0.30 2.51 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 46 H 0.13 2.56 6.33 -52.49 -0.33 2.23 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -33.07 358.84 -8.83 -41.90 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.56 Total: 8.57 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.95 Total: -12.67 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.24 Total: -42.85 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.06 Total: -16.07 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.07 -8.83 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337130747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.156 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds