Wall clock time and date at job start Tue Mar 31 2020 13:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46800 * 2 1 4 4 H 1.09001 * 110.00073 * 44.71735 * 3 2 1 5 5 C 1.54329 * 109.87918 * 165.80595 * 3 2 1 6 6 C 1.55162 * 102.93722 * 141.61169 * 5 3 2 7 7 C 1.55128 * 101.48813 * 324.33391 * 6 5 3 8 8 H 1.08999 * 110.49611 * 278.45379 * 7 6 5 9 9 C 1.52999 * 110.34246 * 156.06324 * 7 6 5 10 10 N 1.47016 * 109.88647 * 283.61951 * 3 2 1 11 11 C 1.34774 * 125.65007 * 61.60290 * 10 3 2 12 12 O 1.21588 * 120.00307 * 194.05439 * 11 10 3 13 13 N 1.34774 * 119.99800 * 14.05788 * 11 10 3 14 14 C 1.40034 * 119.99940 * 179.63531 * 13 11 10 15 15 C 1.38914 * 119.99554 * 214.82545 * 14 13 11 16 16 C 1.38007 * 119.99142 * 180.02562 * 15 14 13 17 17 C 1.38897 * 120.00809 * 0.02562 * 16 15 14 18 18 O 1.35783 * 120.00428 * 179.97438 * 17 16 15 19 19 C 1.34813 * 116.99948 * 5.39885 * 18 17 16 20 20 H 1.08002 * 119.99670 * 354.98271 * 19 18 17 21 21 C 1.38624 * 120.00171 * 174.70161 * 19 18 17 22 22 N 1.31571 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47480 * 90.00137 * 23 21 19 25 25 H 1.48502 * 109.47382 * 210.00170 * 23 21 19 26 26 H 1.48505 * 109.47345 * 329.99971 * 23 21 19 27 27 C 1.38906 * 119.99799 * 0.22888 * 17 16 15 28 28 C 1.38005 * 120.00325 * 359.49185 * 27 17 16 29 29 H 1.09003 * 109.47289 * 78.87236 * 1 2 3 30 30 H 1.09001 * 109.46958 * 198.87330 * 1 2 3 31 31 H 1.09002 * 109.47375 * 318.86951 * 1 2 3 32 32 H 1.08996 * 109.47192 * 240.00304 * 2 1 3 33 33 H 1.09001 * 109.47093 * 119.99748 * 2 1 3 34 34 H 1.08990 * 110.72200 * 259.97263 * 5 3 2 35 35 H 1.08997 * 110.72224 * 23.25348 * 5 3 2 36 36 H 1.08999 * 111.00350 * 82.57752 * 6 5 3 37 37 H 1.09000 * 111.00108 * 206.38690 * 6 5 3 38 38 H 1.09001 * 109.46772 * 305.29358 * 9 7 6 39 39 H 1.08995 * 109.47508 * 65.29516 * 9 7 6 40 40 H 1.09002 * 109.46973 * 185.30252 * 9 7 6 41 41 H 0.97000 * 120.00071 * 359.62363 * 13 11 10 42 42 H 1.07994 * 120.00403 * 0.03581 * 15 14 13 43 43 H 1.08003 * 119.99479 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99994 * 180.02562 * 22 21 19 45 45 H 1.08007 * 119.99820 * 179.75013 * 27 17 16 46 46 H 1.07996 * 120.00917 * 180.27605 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4780 2.0366 0.7207 5 6 3.5414 1.4684 0.3559 6 6 4.0996 2.5786 -0.5733 7 6 3.2391 2.3762 -1.8480 8 1 3.6418 1.5659 -2.4557 9 6 3.1775 3.6718 -2.6595 10 7 1.8997 2.0225 -1.3436 11 6 0.7394 2.1966 -2.0068 12 8 0.7507 2.4436 -3.1973 13 7 -0.4334 2.0969 -1.3504 14 6 -1.6388 2.2853 -2.0379 15 6 -2.7150 2.8893 -1.4002 16 6 -3.9030 3.0744 -2.0776 17 6 -4.0228 2.6565 -3.3968 18 8 -5.1919 2.8382 -4.0631 19 6 -6.1584 3.5293 -3.4261 20 1 -6.0144 3.8398 -2.4017 21 6 -7.3346 3.8463 -4.0876 22 7 -7.5080 3.4724 -5.3371 23 14 -8.6735 4.8045 -3.2052 24 1 -8.4579 6.2594 -3.4098 25 1 -9.9997 4.4190 -3.7509 26 1 -8.6273 4.4967 -1.7531 27 6 -2.9483 2.0478 -4.0328 28 6 -1.7584 1.8678 -3.3574 29 1 -0.3634 0.1983 -1.0084 30 1 -0.3633 -0.9724 0.3324 31 1 -0.3634 0.7741 0.6760 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6850 1.7337 1.4032 35 1 4.0072 0.5085 0.1327 36 1 3.9386 3.5666 -0.1419 37 1 5.1560 2.4151 -0.7864 38 1 2.8209 4.4821 -2.0236 39 1 4.1723 3.9142 -3.0331 40 1 2.4953 3.5423 -3.4996 41 1 -0.4427 1.8945 -0.4018 42 1 -2.6220 3.2140 -0.3744 43 1 -4.7396 3.5443 -1.5820 44 1 -8.3308 3.6946 -5.8001 45 1 -3.0428 1.7192 -5.0573 46 1 -0.9216 1.3986 -3.8532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337130747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:35 Heat of formation + Delta-G solvation = -24.499968 kcal Electronic energy + Delta-G solvation = -27092.724684 eV Core-core repulsion = 23369.316655 eV Total energy + Delta-G solvation = -3723.408029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10283 -40.69048 -39.27707 -37.95689 -36.19422 -34.38394 -33.93290 -32.51491 -31.86901 -31.21538 -29.30467 -27.32009 -26.69725 -24.39905 -23.94408 -23.26618 -22.70330 -21.85209 -20.48466 -19.68811 -19.06083 -18.76652 -17.97439 -17.48861 -16.41644 -16.35749 -16.21658 -15.64725 -15.49119 -15.20735 -14.83134 -14.78791 -14.68368 -14.52799 -14.29646 -14.16482 -13.74627 -13.61665 -13.45788 -13.24118 -13.19886 -12.95929 -12.77716 -12.63361 -12.45247 -12.33478 -12.10316 -11.94866 -11.74235 -11.61750 -11.48344 -11.28042 -11.02842 -10.87431 -10.42755 -9.84130 -9.64573 -8.51170 -8.43898 -6.11564 0.52467 0.59416 1.36969 1.46161 1.54859 1.56516 2.07422 2.20116 2.84675 2.94469 3.17017 3.53452 3.58204 3.68341 3.87751 4.01884 4.06619 4.13405 4.18668 4.27206 4.39922 4.44427 4.49587 4.55033 4.61238 4.69831 4.74305 4.75668 4.85748 4.98525 5.05139 5.07379 5.10359 5.14776 5.19791 5.24030 5.27742 5.32320 5.34827 5.40012 5.44795 5.59112 5.60791 5.70406 6.03897 6.09460 6.19779 6.94742 7.00007 7.55434 7.81442 8.79371 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002720 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.780438 B =10291.935142 C =10622.865473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.130 4.130 3 C 0.118 3.882 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.120 4.120 7 C 0.144 3.856 8 H 0.070 0.930 9 C -0.164 4.164 10 N -0.630 5.630 11 C 0.714 3.286 12 O -0.614 6.614 13 N -0.666 5.666 14 C 0.084 3.916 15 C -0.085 4.085 16 C -0.216 4.216 17 C 0.107 3.893 18 O -0.232 6.232 19 C -0.412 4.412 20 H 0.106 0.894 21 C -0.026 4.026 22 N -0.924 5.924 23 Si 1.020 2.980 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.248 1.248 27 C -0.187 4.187 28 C -0.072 4.072 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.419 0.581 42 H 0.154 0.846 43 H 0.133 0.867 44 H 0.272 0.728 45 H 0.110 0.890 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.153 -4.075 18.717 30.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.168 4.168 3 C 0.015 3.985 4 H 0.101 0.899 5 C -0.154 4.154 6 C -0.158 4.158 7 C 0.042 3.958 8 H 0.088 0.912 9 C -0.222 4.222 10 N -0.368 5.368 11 C 0.417 3.583 12 O -0.494 6.494 13 N -0.322 5.322 14 C -0.011 4.011 15 C -0.105 4.105 16 C -0.235 4.235 17 C 0.056 3.944 18 O -0.139 6.139 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.223 4.223 22 N -0.562 5.562 23 Si 0.840 3.160 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.172 1.172 27 C -0.207 4.207 28 C -0.093 4.093 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.264 0.736 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.081 0.919 45 H 0.129 0.871 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 23.939 -3.961 17.500 29.917 hybrid contribution -1.084 0.235 -0.197 1.126 sum 22.855 -3.726 17.303 28.908 Atomic orbital electron populations 1.22502 0.96785 1.02725 1.02118 1.22007 0.95398 0.95983 1.03455 1.22117 0.99587 0.93839 0.82933 0.89888 1.22693 0.91178 1.00093 1.01425 1.22903 0.99912 0.99932 0.93003 1.21963 0.80789 0.96487 0.96605 0.91220 1.22081 1.02886 0.96606 1.00620 1.47817 1.04352 1.65568 1.19066 1.15642 0.80363 0.77904 0.84371 1.90871 1.86241 1.57281 1.14975 1.43255 1.02143 1.73453 1.13336 1.17166 0.86475 1.04430 0.92979 1.20763 0.91283 0.97671 1.00802 1.21086 0.99913 1.08267 0.94283 1.19807 0.86845 0.95422 0.92304 1.83962 1.20055 1.66666 1.43199 1.21875 0.94819 1.33706 0.98411 0.87632 1.26634 1.00502 0.98483 0.96667 1.70209 1.27715 1.46182 1.12134 0.84562 0.75401 0.77603 0.78483 1.19019 1.19787 1.17160 1.20237 0.92245 1.07610 1.00608 1.20735 0.95427 0.98768 0.94339 0.93050 0.91533 0.91274 0.92629 0.87929 0.87474 0.89257 0.90198 0.87578 0.93316 0.89749 0.93445 0.73572 0.82833 0.84907 0.91926 0.87140 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.94 8.13 71.98 0.59 -2.35 16 2 C -0.13 -1.61 5.38 30.60 0.16 -1.45 16 3 C 0.12 1.46 2.80 45.34 0.13 1.59 16 4 H 0.08 0.88 7.54 -2.39 -0.02 0.86 16 5 C -0.12 -0.75 6.43 31.79 0.20 -0.54 16 6 C -0.12 -1.05 6.51 32.06 0.21 -0.84 16 7 C 0.14 2.55 3.72 45.54 0.17 2.72 16 8 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 9 C -0.16 -3.52 8.91 71.98 0.64 -2.88 16 10 N -0.63 -13.20 2.98 -781.87 -2.33 -15.53 16 11 C 0.71 21.52 7.13 179.06 1.28 22.79 16 12 O -0.61 -24.06 12.02 -3.99 -0.05 -24.11 16 13 N -0.67 -18.52 3.05 -317.04 -0.97 -19.49 16 14 C 0.08 3.00 6.19 38.15 0.24 3.24 16 15 C -0.08 -2.97 9.96 22.38 0.22 -2.75 16 16 C -0.22 -9.44 9.16 22.37 0.20 -9.24 16 17 C 0.11 5.55 6.65 22.59 0.15 5.70 16 18 O -0.23 -14.36 9.76 -22.94 -0.22 -14.59 16 19 C -0.41 -24.23 9.48 67.91 0.64 -23.59 16 20 H 0.11 5.58 5.20 -2.91 -0.02 5.57 16 21 C -0.03 -1.49 5.49 84.82 0.47 -1.02 16 22 N -0.92 -57.95 13.67 21.61 0.30 -57.65 16 23 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 27 C -0.19 -8.95 9.98 22.37 0.22 -8.72 16 28 C -0.07 -3.02 8.66 22.38 0.19 -2.83 16 29 H 0.05 1.19 5.40 -2.39 -0.01 1.17 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.89 6.24 -2.39 -0.01 0.88 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 34 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.09 0.45 7.85 -2.39 -0.02 0.43 16 36 H 0.08 0.71 8.05 -2.39 -0.02 0.69 16 37 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.05 1.06 8.12 -2.39 -0.02 1.04 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.43 5.98 -2.39 -0.01 1.41 16 41 H 0.42 8.74 4.22 -92.71 -0.39 8.35 16 42 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 43 H 0.13 5.69 5.63 -2.91 -0.02 5.67 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 46 H 0.13 5.33 6.33 -2.91 -0.02 5.31 16 Total: -1.00 -79.40 358.84 5.08 -74.32 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.61 Total: 32.03 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 5.72 Total: -20.17 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -3.00 Total: -92.67 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.27 Total: -38.69 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -79.40 5.08 -74.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337130747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.822 kcal (2) G-P(sol) polarization free energy of solvation -79.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds