Wall clock time and date at job start Tue Mar 31 2020 13:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 H 1.08998 * 115.56216 * 29.30872 * 3 2 1 5 5 C 1.53002 * 117.49859 * 243.62310 * 3 2 1 6 6 C 1.52997 * 117.50202 * 174.99930 * 3 2 1 7 7 H 1.09009 * 117.51470 * 0.02562 * 6 3 2 8 8 C 1.53000 * 117.50397 * 214.98283 * 6 3 2 9 9 N 1.46496 * 109.47241 * 174.98550 * 8 6 3 10 10 C 1.34778 * 119.99530 * 179.97438 * 9 8 6 11 11 O 1.21588 * 120.00371 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99605 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99803 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47115 * 180.02562 * 13 12 10 15 15 C 1.38321 * 119.96474 * 270.01991 * 14 13 12 16 16 C 1.38283 * 120.14125 * 179.97438 * 15 14 13 17 17 C 1.38114 * 120.06643 * 359.76777 * 16 15 14 18 18 C 1.38868 * 119.92979 * 0.51359 * 17 16 15 19 19 O 1.35747 * 120.06663 * 179.74389 * 18 17 16 20 20 C 1.34833 * 117.00257 * 5.22954 * 19 18 17 21 21 H 1.07999 * 120.00198 * 354.92975 * 20 19 18 22 22 C 1.38661 * 119.99840 * 174.64477 * 20 19 18 23 23 N 1.31552 * 120.00162 * 0.28041 * 22 20 19 24 24 Si 1.86797 * 119.99637 * 180.27874 * 22 20 19 25 25 H 1.48496 * 109.47283 * 60.00388 * 24 22 20 26 26 H 1.48505 * 109.46965 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47285 * 300.00186 * 24 22 20 28 28 C 1.38080 * 119.96775 * 90.00112 * 14 13 12 29 29 H 1.09006 * 109.47274 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47542 * 300.00196 * 1 2 3 31 31 H 1.09004 * 109.46885 * 60.00264 * 1 2 3 32 32 H 1.09009 * 109.47401 * 240.00123 * 2 1 3 33 33 H 1.08993 * 109.47254 * 120.00353 * 2 1 3 34 34 H 1.08996 * 117.49730 * 145.02225 * 5 3 2 35 35 H 1.08998 * 117.51980 * 359.97438 * 5 3 2 36 36 H 1.09004 * 109.46873 * 54.97997 * 8 6 3 37 37 H 1.09004 * 109.46724 * 294.98826 * 8 6 3 38 38 H 0.96993 * 120.00451 * 359.97438 * 9 8 6 39 39 H 0.96997 * 120.00541 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.47477 * 60.00461 * 13 12 10 41 41 H 1.09002 * 109.46983 * 300.00296 * 13 12 10 42 42 H 1.08000 * 119.92906 * 359.97438 * 15 14 13 43 43 H 1.07999 * 119.96278 * 180.02562 * 16 15 14 44 44 H 1.08002 * 120.03972 * 180.27228 * 17 16 15 45 45 H 0.96994 * 120.00175 * 179.97438 * 23 22 20 46 46 H 1.07994 * 120.03216 * 0.04134 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8439 1.9076 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7721 0.1957 8 6 4.0300 2.8804 0.9033 9 7 5.4910 2.8511 1.0075 10 6 6.1397 3.8353 1.6609 11 8 5.5125 4.7473 2.1641 12 7 7.4838 3.8081 1.7573 13 6 8.1891 4.8782 2.4669 14 6 9.6721 4.6131 2.4297 15 6 10.2666 3.8703 3.4337 16 6 11.6270 3.6244 3.4029 17 6 12.3958 4.1162 2.3663 18 6 11.8030 4.8673 1.3599 19 8 12.5568 5.3565 0.3425 20 6 13.8533 4.9875 0.3089 21 1 14.2682 4.3986 1.1135 22 6 14.6523 5.3591 -0.7617 23 7 14.1469 6.0764 -1.7419 24 14 16.4464 4.8414 -0.8120 25 1 16.5344 3.3591 -0.7962 26 1 17.0773 5.3620 -2.0514 27 1 17.1538 5.3919 0.3719 28 6 10.4361 5.1118 1.3932 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.7212 2.9427 -1.5343 35 1 3.0101 1.1860 -2.0158 36 1 3.5940 2.8649 1.9022 37 1 3.7208 3.7887 0.3860 38 1 5.9913 2.1234 0.6064 39 1 7.9842 3.0804 1.3562 40 1 7.8515 4.9112 3.5028 41 1 7.9789 5.8333 1.9856 42 1 9.6669 3.4814 4.2434 43 1 12.0881 3.0436 4.1881 44 1 13.4576 3.9202 2.3404 45 1 14.7059 6.3366 -2.4906 46 1 9.9715 5.6920 0.6098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364532995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:11 Heat of formation + Delta-G solvation = -23.040672 kcal Electronic energy + Delta-G solvation = -24771.275768 eV Core-core repulsion = 21047.931019 eV Total energy + Delta-G solvation = -3723.344750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.03689 -39.11783 -38.50946 -36.83478 -34.71182 -34.33519 -32.40678 -32.31486 -30.72282 -29.15389 -27.30897 -25.63025 -24.83478 -24.16110 -21.72248 -21.33431 -21.18282 -20.80187 -20.53072 -18.47223 -17.61988 -17.07400 -16.43305 -15.74580 -15.33053 -15.14474 -15.07898 -14.65561 -14.57113 -14.39507 -14.17691 -13.84660 -13.80776 -13.61138 -13.36221 -12.80502 -12.59470 -12.48452 -12.36875 -12.09746 -11.81694 -11.67618 -11.65880 -11.40045 -11.37871 -10.93527 -10.82348 -10.70236 -10.49404 -10.40703 -10.36446 -10.05765 -9.41891 -9.25133 -8.89680 -8.73032 -8.25267 -7.33205 -6.49663 -4.09349 1.87039 2.26645 2.81499 3.10031 3.10872 3.13896 3.27259 3.39188 3.92014 4.12457 4.29883 4.43150 4.52600 4.61600 4.76876 4.87220 4.93925 4.94905 5.03556 5.06828 5.28289 5.32542 5.39687 5.50170 5.52481 5.55432 5.59111 5.67816 5.73239 5.77987 5.82813 5.85760 5.94387 5.97499 6.07476 6.25327 6.41168 6.55671 6.58419 6.81894 6.93642 7.00620 7.19520 7.27290 7.35326 7.70825 7.94295 8.06438 8.65454 8.95485 9.64351 10.67988 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018126 B = 0.001929 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.363310 B =14511.758742 C =15300.331641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.141 4.141 4 H 0.107 0.893 5 C -0.171 4.171 6 C -0.166 4.166 7 H 0.110 0.890 8 C 0.172 3.828 9 N -0.747 5.747 10 C 0.703 3.297 11 O -0.597 6.597 12 N -0.736 5.736 13 C 0.187 3.813 14 C -0.073 4.073 15 C -0.194 4.194 16 C -0.077 4.077 17 C -0.226 4.226 18 C 0.150 3.850 19 O -0.176 6.176 20 C -0.394 4.394 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.170 4.170 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.399 0.601 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.271 0.729 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.560 -11.886 3.626 23.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.159 4.159 4 H 0.126 0.874 5 C -0.208 4.208 6 C -0.185 4.185 7 H 0.128 0.872 8 C 0.047 3.953 9 N -0.404 5.404 10 C 0.403 3.597 11 O -0.475 6.475 12 N -0.391 5.391 13 C 0.064 3.936 14 C -0.074 4.074 15 C -0.214 4.214 16 C -0.095 4.095 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.080 6.080 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.190 4.190 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.081 0.919 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.115 -10.744 3.676 23.099 hybrid contribution 1.564 -0.979 -0.406 1.889 sum -18.552 -11.723 3.270 22.187 Atomic orbital electron populations 1.21747 0.95361 1.01628 1.02009 1.21134 0.96086 0.93941 1.02070 1.22487 0.92637 0.98387 1.02419 0.87450 1.23272 1.03525 1.02713 0.91320 1.22576 0.95700 0.99822 1.00390 0.87200 1.20667 0.78853 0.96068 0.99689 1.45069 1.07372 1.27330 1.60580 1.15941 0.81939 0.82439 0.79397 1.90912 1.66665 1.36718 1.53245 1.45252 1.04597 1.28873 1.60392 1.19996 0.87235 0.89674 0.96736 1.19290 0.93391 0.99293 0.95376 1.20486 0.94899 1.05502 1.00497 1.20745 0.93609 0.98133 0.97001 1.21240 1.00954 1.05372 0.96983 1.19333 0.90924 0.91490 0.88660 1.83983 1.22069 1.61039 1.40861 1.21278 0.82602 1.35472 1.07669 0.89091 1.25294 1.00278 0.96394 0.94475 1.70023 1.36820 1.33896 1.08803 0.85779 0.80374 0.79043 0.78231 1.19504 1.20249 1.19464 1.20095 0.91313 1.06984 1.00570 0.92707 0.92589 0.92584 0.91806 0.91542 0.88485 0.88608 0.91376 0.91544 0.76956 0.76723 0.91128 0.91053 0.87492 0.87301 0.85482 0.91898 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.87 37.16 0.37 -0.40 16 2 C -0.09 -0.53 6.22 -26.73 -0.17 -0.70 16 3 C -0.14 -0.90 5.46 -90.62 -0.49 -1.39 16 4 H 0.11 0.69 8.07 -51.93 -0.42 0.27 16 5 C -0.17 -1.14 9.82 -26.73 -0.26 -1.40 16 6 C -0.17 -1.18 5.57 -90.62 -0.50 -1.68 16 7 H 0.11 0.71 8.04 -51.92 -0.42 0.29 16 8 C 0.17 1.64 5.96 -4.04 -0.02 1.62 16 9 N -0.75 -7.90 5.56 -65.22 -0.36 -8.26 16 10 C 0.70 10.10 8.57 -86.92 -0.74 9.36 16 11 O -0.60 -10.89 16.34 5.29 0.09 -10.81 16 12 N -0.74 -9.94 5.55 -66.41 -0.37 -10.31 16 13 C 0.19 2.82 5.80 -5.19 -0.03 2.79 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 15 C -0.19 -3.17 9.70 -39.53 -0.38 -3.56 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 17 C -0.23 -4.70 9.17 -39.39 -0.36 -5.06 16 18 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 19 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 20 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 21 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 24 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 C -0.17 -3.43 9.65 -39.40 -0.38 -3.81 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.34 7.88 -51.92 -0.41 -0.06 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 38 H 0.40 3.20 8.41 -40.82 -0.34 2.86 16 39 H 0.40 4.73 8.48 -40.82 -0.35 4.38 16 40 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 45 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -32.11 389.45 -10.14 -42.24 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.10 Total: 9.22 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.99 Total: -14.01 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.03 Total: -42.68 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.11 -10.14 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364532995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.203 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds