Wall clock time and date at job start Tue Mar 31 2020 12:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34767 * 119.99987 * 2 1 4 4 O 1.21283 * 120.00384 * 354.77012 * 3 2 1 5 5 C 1.50698 * 119.99750 * 175.04152 * 3 2 1 6 6 H 1.09000 * 109.47434 * 30.77399 * 5 3 2 7 7 N 1.46501 * 109.47307 * 150.77386 * 5 3 2 8 8 C 1.34773 * 120.00807 * 205.00134 * 7 5 3 9 9 O 1.21290 * 119.99583 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00843 * 180.02562 * 8 7 5 11 11 H 1.09009 * 109.46823 * 299.99929 * 10 8 7 12 12 C 1.50695 * 109.47317 * 59.99692 * 10 8 7 13 13 H 1.08001 * 119.99699 * 25.75603 * 12 10 8 14 14 C 1.37875 * 120.00172 * 205.75850 * 12 10 8 15 15 N 1.31515 * 120.00232 * 5.31431 * 14 12 10 16 16 Si 1.86802 * 120.00060 * 185.31370 * 14 12 10 17 17 H 1.48495 * 109.46923 * 59.99982 * 16 14 12 18 18 H 1.48500 * 109.47229 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47040 * 299.99810 * 16 14 12 20 20 C 1.50700 * 109.47464 * 179.97438 * 10 8 7 21 21 C 1.38228 * 119.99938 * 298.97150 * 20 10 8 22 22 C 1.38242 * 119.99993 * 179.78762 * 21 20 10 23 23 C 1.38233 * 119.99860 * 0.44013 * 22 21 20 24 24 C 1.38242 * 119.99944 * 359.81380 * 23 22 21 25 25 C 1.38232 * 119.99886 * 359.97438 * 24 23 22 26 26 C 1.52998 * 109.47555 * 270.77192 * 5 3 2 27 27 C 1.53008 * 109.46954 * 63.99073 * 26 5 3 28 28 C 1.53001 * 109.47579 * 183.99062 * 26 5 3 29 29 H 1.08997 * 109.47485 * 300.00436 * 1 2 3 30 30 H 1.09009 * 109.47040 * 60.00126 * 1 2 3 31 31 H 1.08994 * 109.47577 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99414 * 180.02562 * 2 1 3 33 33 H 0.97003 * 120.00056 * 24.99796 * 7 5 3 34 34 H 0.96997 * 120.00431 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.00091 * 0.02562 * 21 20 10 36 36 H 1.07999 * 119.99894 * 180.27508 * 22 21 20 37 37 H 1.07997 * 120.00075 * 179.83305 * 23 22 21 38 38 H 1.08002 * 119.99426 * 179.97438 * 24 23 22 39 39 H 1.07995 * 119.99865 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47102 * 303.99871 * 26 5 3 41 41 H 1.09000 * 109.46778 * 60.33746 * 27 26 5 42 42 H 1.09000 * 109.46957 * 180.33634 * 27 26 5 43 43 H 1.09000 * 109.46964 * 300.33833 * 27 26 5 44 44 H 1.08998 * 109.46851 * 60.00112 * 28 26 5 45 45 H 1.09001 * 109.47167 * 180.02562 * 28 26 5 46 46 H 1.08992 * 109.47068 * 300.00029 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5363 2.2153 -0.0957 5 6 3.6416 1.1695 0.1128 6 1 4.0419 0.2652 -0.3457 7 7 4.1811 2.3454 -0.5746 8 6 5.4422 2.3288 -1.0498 9 8 6.1303 1.3400 -0.9088 10 6 5.9973 3.5385 -1.7564 11 1 5.3883 3.7583 -2.6334 12 6 5.9763 4.7200 -0.8213 13 1 6.0087 4.5639 0.2469 14 6 5.9157 6.0003 -1.3294 15 7 5.7708 6.1883 -2.6230 16 14 6.0392 7.4680 -0.1804 17 1 7.3392 7.4276 0.5361 18 1 5.9468 8.7231 -0.9688 19 1 4.9292 7.4202 0.8048 20 6 7.4155 3.2631 -2.1852 21 6 8.3812 2.9793 -1.2378 22 6 9.6813 2.7223 -1.6315 23 6 10.0174 2.7581 -2.9719 24 6 9.0526 3.0471 -3.9189 25 6 7.7518 3.2998 -3.5256 26 6 4.0423 1.2132 1.5887 27 6 3.5645 -0.0628 2.2849 28 6 5.5647 1.3160 1.7012 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.9499 -0.8401 -0.0004 33 1 3.6307 3.1360 -0.6878 34 1 5.7278 7.0890 -2.9804 35 1 8.1193 2.9545 -0.1904 36 1 10.4348 2.4962 -0.8917 37 1 11.0335 2.5600 -3.2793 38 1 9.3154 3.0755 -4.9661 39 1 6.9980 3.5251 -4.2654 40 1 3.5834 2.0801 2.0643 41 1 4.0279 -0.9293 1.8132 42 1 3.8447 -0.0290 3.3377 43 1 2.4805 -0.1390 2.1996 44 1 5.9051 2.2250 1.2053 45 1 5.8501 1.3467 2.7527 46 1 6.0235 0.4492 1.2258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412078895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:14 Heat of formation + Delta-G solvation = -60.380980 kcal Electronic energy + Delta-G solvation = -27771.712795 eV Core-core repulsion = 24046.748848 eV Total energy + Delta-G solvation = -3724.963947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.32870 -38.95406 -37.73454 -35.62562 -34.72013 -33.60747 -32.56865 -30.99841 -29.88407 -28.57418 -27.40804 -26.65233 -25.43752 -23.69851 -21.56479 -20.98003 -20.94822 -19.89674 -19.38635 -17.59713 -16.71500 -16.37002 -15.79371 -15.65095 -15.53513 -15.15353 -14.47248 -14.44412 -14.16744 -13.94210 -13.78556 -13.13260 -13.01793 -12.80065 -12.56312 -12.45457 -12.35399 -12.29030 -12.12434 -11.91768 -11.62485 -11.41613 -11.26317 -10.99077 -10.97394 -10.83923 -10.59709 -10.35401 -10.22232 -9.99259 -9.78565 -9.43075 -9.21023 -8.69894 -8.57953 -8.36102 -7.89190 -7.57053 -6.21546 -4.27649 2.42601 2.44507 2.59856 3.05148 3.27252 3.31538 3.33403 3.65048 4.09310 4.33925 4.66919 4.87642 4.97624 5.05082 5.10115 5.16734 5.33276 5.35778 5.46319 5.63564 5.69551 5.75848 5.83643 5.92981 5.93590 6.00845 6.06974 6.22198 6.25463 6.27509 6.31505 6.53189 6.53506 6.64003 6.83598 6.91177 7.01803 7.08275 7.22507 7.38496 7.41862 7.49257 7.68006 7.82367 7.99121 8.09982 8.15845 8.37974 8.74431 9.20110 9.38388 10.86876 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004800 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.204801 B = 5832.224935 C = 6873.390645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.735 5.735 3 C 0.513 3.487 4 O -0.527 6.527 5 C 0.136 3.864 6 H 0.100 0.900 7 N -0.715 5.715 8 C 0.533 3.467 9 O -0.561 6.561 10 C 0.055 3.945 11 H 0.084 0.916 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.076 3.924 15 N -0.876 5.876 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.009 4.009 21 C -0.082 4.082 22 C -0.137 4.137 23 C -0.149 4.149 24 C -0.134 4.134 25 C -0.114 4.114 26 C -0.097 4.097 27 C -0.151 4.151 28 C -0.138 4.138 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.403 0.597 33 H 0.415 0.585 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.043 0.957 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -12.242 4.690 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.388 5.388 3 C 0.299 3.701 4 O -0.402 6.402 5 C 0.026 3.974 6 H 0.118 0.882 7 N -0.369 5.369 8 C 0.324 3.676 9 O -0.440 6.440 10 C 0.033 3.967 11 H 0.102 0.898 12 C -0.554 4.554 13 H 0.081 0.919 14 C -0.129 4.129 15 N -0.512 5.512 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.010 4.010 21 C -0.100 4.100 22 C -0.155 4.155 23 C -0.168 4.168 24 C -0.152 4.152 25 C -0.132 4.132 26 C -0.118 4.118 27 C -0.209 4.209 28 C -0.196 4.196 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.252 0.748 34 H 0.077 0.923 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.038 -12.003 4.562 13.794 hybrid contribution -0.006 0.923 0.510 1.055 sum -5.044 -11.080 5.071 13.188 Atomic orbital electron populations 1.21524 0.79707 1.02029 1.02398 1.45852 1.07671 1.08718 1.76598 1.20885 0.90228 0.83717 0.75306 1.90723 1.70215 1.31373 1.47917 1.20737 0.88901 0.93034 0.94686 0.88224 1.45824 1.15680 1.16419 1.59011 1.21528 0.79867 0.89607 0.76623 1.90583 1.58577 1.35614 1.59190 1.18062 0.90262 0.90244 0.98082 0.89779 1.20606 1.53510 0.89019 0.92231 0.91926 1.24926 0.93676 0.99095 0.95197 1.69881 1.47158 1.22522 1.11602 0.86576 0.78956 0.81420 0.80735 1.19969 1.21141 1.19931 1.19997 0.96834 0.92145 0.92044 1.20788 0.92120 0.97820 0.99282 1.20933 0.96465 1.02604 0.95466 1.20783 0.98273 1.04163 0.93534 1.20896 0.93843 1.02187 0.98261 1.20978 0.95897 1.00329 0.95993 1.21424 0.98442 0.98761 0.93128 1.21934 1.00741 0.97393 1.00831 1.21884 0.93193 1.04089 1.00386 0.92313 0.92143 0.90769 0.76348 0.74800 0.92339 0.87207 0.87730 0.87852 0.87683 0.86962 0.90708 0.92285 0.92177 0.92742 0.91330 0.93769 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.71 59.85 0.64 1.39 16 2 N -0.74 -7.52 4.62 -67.08 -0.31 -7.83 16 3 C 0.51 7.47 6.31 -10.99 -0.07 7.40 16 4 O -0.53 -9.67 16.09 5.55 0.09 -9.58 16 5 C 0.14 2.08 2.22 -69.08 -0.15 1.92 16 6 H 0.10 1.47 7.58 -51.93 -0.39 1.08 16 7 N -0.72 -13.53 4.78 -54.94 -0.26 -13.79 16 8 C 0.53 11.37 5.23 -10.99 -0.06 11.32 16 9 O -0.56 -12.33 12.31 5.55 0.07 -12.27 16 10 C 0.05 1.29 2.31 -94.08 -0.22 1.07 16 11 H 0.08 2.14 7.25 -51.92 -0.38 1.77 16 12 C -0.52 -12.98 7.68 -34.44 -0.26 -13.25 16 13 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 14 C 0.08 1.97 5.45 -17.82 -0.10 1.88 16 15 N -0.88 -23.56 12.91 55.43 0.72 -22.84 16 16 Si 0.90 20.57 29.54 -169.99 -5.02 15.54 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 C -0.01 -0.21 4.37 -104.63 -0.46 -0.67 16 21 C -0.08 -1.82 8.06 -39.58 -0.32 -2.14 16 22 C -0.14 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 24 C -0.13 -2.62 10.05 -39.58 -0.40 -3.01 16 25 C -0.11 -2.51 9.67 -39.58 -0.38 -2.89 16 26 C -0.10 -1.37 2.67 -90.62 -0.24 -1.62 16 27 C -0.15 -1.58 8.91 37.16 0.33 -1.25 16 28 C -0.14 -2.20 7.69 37.16 0.29 -1.91 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 3.03 8.83 -40.82 -0.36 2.67 16 33 H 0.41 8.37 7.72 -40.82 -0.32 8.06 16 34 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.11 2.46 8.02 -52.49 -0.42 2.04 16 36 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.11 2.44 7.95 -52.49 -0.42 2.02 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.52 6.58 -51.93 -0.34 0.18 16 44 H 0.07 1.31 5.89 -51.93 -0.31 1.01 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.10 7.26 -51.93 -0.38 0.72 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -30.10 377.36 -8.31 -38.41 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -7.08 Total: 14.71 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.20 Total: -8.04 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.14 Total: -44.46 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.16 Total: -21.85 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.10 -8.31 -38.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412078895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.968 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds