Wall clock time and date at job start Tue Mar 31 2020 12:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34767 * 119.99987 * 2 1 4 4 O 1.21283 * 120.00384 * 354.77012 * 3 2 1 5 5 C 1.50698 * 119.99750 * 175.04152 * 3 2 1 6 6 H 1.09000 * 109.47434 * 30.77399 * 5 3 2 7 7 N 1.46501 * 109.47307 * 150.77386 * 5 3 2 8 8 C 1.34773 * 120.00807 * 205.00134 * 7 5 3 9 9 O 1.21290 * 119.99583 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00843 * 180.02562 * 8 7 5 11 11 H 1.09009 * 109.46823 * 299.99929 * 10 8 7 12 12 C 1.50695 * 109.47317 * 59.99692 * 10 8 7 13 13 H 1.08001 * 119.99699 * 25.75603 * 12 10 8 14 14 C 1.37875 * 120.00172 * 205.75850 * 12 10 8 15 15 N 1.31515 * 120.00232 * 5.31431 * 14 12 10 16 16 Si 1.86802 * 120.00060 * 185.31370 * 14 12 10 17 17 H 1.48495 * 109.46923 * 59.99982 * 16 14 12 18 18 H 1.48500 * 109.47229 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47040 * 299.99810 * 16 14 12 20 20 C 1.50700 * 109.47464 * 179.97438 * 10 8 7 21 21 C 1.38228 * 119.99938 * 298.97150 * 20 10 8 22 22 C 1.38242 * 119.99993 * 179.78762 * 21 20 10 23 23 C 1.38233 * 119.99860 * 0.44013 * 22 21 20 24 24 C 1.38242 * 119.99944 * 359.81380 * 23 22 21 25 25 C 1.38232 * 119.99886 * 359.97438 * 24 23 22 26 26 C 1.52998 * 109.47555 * 270.77192 * 5 3 2 27 27 C 1.53008 * 109.46954 * 63.99073 * 26 5 3 28 28 C 1.53001 * 109.47579 * 183.99062 * 26 5 3 29 29 H 1.08997 * 109.47485 * 300.00436 * 1 2 3 30 30 H 1.09009 * 109.47040 * 60.00126 * 1 2 3 31 31 H 1.08994 * 109.47577 * 179.97438 * 1 2 3 32 32 H 0.96998 * 119.99414 * 180.02562 * 2 1 3 33 33 H 0.97003 * 120.00056 * 24.99796 * 7 5 3 34 34 H 0.96997 * 120.00431 * 179.97438 * 15 14 12 35 35 H 1.08000 * 120.00091 * 0.02562 * 21 20 10 36 36 H 1.07999 * 119.99894 * 180.27508 * 22 21 20 37 37 H 1.07997 * 120.00075 * 179.83305 * 23 22 21 38 38 H 1.08002 * 119.99426 * 179.97438 * 24 23 22 39 39 H 1.07995 * 119.99865 * 180.02562 * 25 24 23 40 40 H 1.09004 * 109.47102 * 303.99871 * 26 5 3 41 41 H 1.09000 * 109.46778 * 60.33746 * 27 26 5 42 42 H 1.09000 * 109.46957 * 180.33634 * 27 26 5 43 43 H 1.09000 * 109.46964 * 300.33833 * 27 26 5 44 44 H 1.08998 * 109.46851 * 60.00112 * 28 26 5 45 45 H 1.09001 * 109.47167 * 180.02562 * 28 26 5 46 46 H 1.08992 * 109.47068 * 300.00029 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5363 2.2153 -0.0957 5 6 3.6416 1.1695 0.1128 6 1 4.0419 0.2652 -0.3457 7 7 4.1811 2.3454 -0.5746 8 6 5.4422 2.3288 -1.0498 9 8 6.1303 1.3400 -0.9088 10 6 5.9973 3.5385 -1.7564 11 1 5.3883 3.7583 -2.6334 12 6 5.9763 4.7200 -0.8213 13 1 6.0087 4.5639 0.2469 14 6 5.9157 6.0003 -1.3294 15 7 5.7708 6.1883 -2.6230 16 14 6.0392 7.4680 -0.1804 17 1 7.3392 7.4276 0.5361 18 1 5.9468 8.7231 -0.9688 19 1 4.9292 7.4202 0.8048 20 6 7.4155 3.2631 -2.1852 21 6 8.3812 2.9793 -1.2378 22 6 9.6813 2.7223 -1.6315 23 6 10.0174 2.7581 -2.9719 24 6 9.0526 3.0471 -3.9189 25 6 7.7518 3.2998 -3.5256 26 6 4.0423 1.2132 1.5887 27 6 3.5645 -0.0628 2.2849 28 6 5.5647 1.3160 1.7012 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.9499 -0.8401 -0.0004 33 1 3.6307 3.1360 -0.6878 34 1 5.7278 7.0890 -2.9804 35 1 8.1193 2.9545 -0.1904 36 1 10.4348 2.4962 -0.8917 37 1 11.0335 2.5600 -3.2793 38 1 9.3154 3.0755 -4.9661 39 1 6.9980 3.5251 -4.2654 40 1 3.5834 2.0801 2.0643 41 1 4.0279 -0.9293 1.8132 42 1 3.8447 -0.0290 3.3377 43 1 2.4805 -0.1390 2.1996 44 1 5.9051 2.2250 1.2053 45 1 5.8501 1.3467 2.7527 46 1 6.0235 0.4492 1.2258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412078895.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:13 Heat of formation + Delta-G solvation = -79.410006 kcal Electronic energy + Delta-G solvation = -27772.537955 eV Core-core repulsion = 24046.748848 eV Total energy + Delta-G solvation = -3725.789107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66516 -40.47029 -39.28517 -36.93918 -35.76568 -35.48338 -34.01285 -32.79733 -31.49753 -29.86527 -28.88866 -27.76851 -26.64324 -25.48900 -23.18815 -22.51938 -22.06672 -21.12704 -20.98063 -18.99579 -18.53658 -17.78344 -17.28500 -17.17526 -16.73701 -16.47941 -16.18176 -15.83938 -15.66878 -15.36887 -15.10371 -14.72244 -14.31107 -14.00202 -13.98725 -13.89562 -13.69847 -13.50215 -13.28729 -13.27417 -13.06334 -12.90670 -12.86205 -12.78065 -12.43973 -12.20890 -12.05361 -11.90891 -11.79682 -11.64677 -11.28958 -11.01340 -10.64638 -10.37379 -10.17182 -9.87490 -9.51744 -9.23616 -8.20419 -6.30864 0.79402 0.83388 1.40860 1.41406 1.42357 1.48689 1.93470 1.99802 2.42529 2.65937 3.09694 3.30246 3.63314 3.81775 3.93006 4.19561 4.27338 4.31022 4.32565 4.43682 4.48059 4.54720 4.61245 4.62295 4.68148 4.82541 4.90456 4.93839 4.97668 5.00031 5.01044 5.14240 5.16276 5.33948 5.37197 5.40156 5.46973 5.48504 5.61013 5.66814 5.81839 5.86280 5.97242 6.25497 6.42017 6.43110 6.68809 6.75670 7.11435 7.35489 7.51826 8.87377 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004800 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.204801 B = 5832.224935 C = 6873.390645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.514 3.486 4 O -0.572 6.572 5 C 0.133 3.867 6 H 0.109 0.891 7 N -0.714 5.714 8 C 0.538 3.462 9 O -0.569 6.569 10 C 0.054 3.946 11 H 0.055 0.945 12 C -0.515 4.515 13 H 0.054 0.946 14 C 0.033 3.967 15 N -0.904 5.904 16 Si 0.948 3.052 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.270 1.270 20 C -0.034 4.034 21 C -0.103 4.103 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.132 4.132 25 C -0.138 4.138 26 C -0.094 4.094 27 C -0.142 4.142 28 C -0.131 4.131 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.117 0.883 32 H 0.419 0.581 33 H 0.406 0.594 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.029 0.971 45 H 0.061 0.939 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 -14.231 5.557 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.300 3.700 4 O -0.450 6.450 5 C 0.024 3.976 6 H 0.126 0.874 7 N -0.366 5.366 8 C 0.327 3.673 9 O -0.449 6.449 10 C 0.033 3.967 11 H 0.073 0.927 12 C -0.552 4.552 13 H 0.073 0.927 14 C -0.169 4.169 15 N -0.541 5.541 16 Si 0.774 3.226 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.195 1.195 20 C -0.035 4.035 21 C -0.121 4.121 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.114 4.114 27 C -0.200 4.200 28 C -0.188 4.188 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.135 0.865 32 H 0.256 0.744 33 H 0.242 0.758 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.363 -14.063 5.449 15.700 hybrid contribution -0.214 1.440 0.226 1.473 sum -4.577 -12.623 5.674 14.577 Atomic orbital electron populations 1.21737 0.78087 1.04608 1.01571 1.45726 1.08647 1.08009 1.74281 1.20704 0.89732 0.84333 0.75246 1.90709 1.70730 1.33178 1.50428 1.20987 0.89796 0.91548 0.95231 0.87354 1.45764 1.14766 1.17343 1.58681 1.21046 0.80595 0.88837 0.76774 1.90551 1.58979 1.35568 1.59795 1.17945 0.90885 0.90984 0.96881 0.92740 1.20715 1.52666 0.89847 0.92022 0.92732 1.25561 0.93759 1.01230 0.96329 1.69992 1.48554 1.22684 1.12832 0.85751 0.78828 0.78849 0.79171 1.19913 1.20829 1.19499 1.20017 0.96576 0.93852 0.93038 1.20801 0.93432 0.99457 0.98442 1.21311 0.95854 1.01204 0.97008 1.21251 0.99953 1.02150 0.92704 1.21270 0.92715 1.00677 1.00301 1.21078 0.97319 1.01835 0.95420 1.21393 0.97086 1.00475 0.92445 1.21876 1.01516 0.95481 1.01105 1.21775 0.94434 1.01727 1.00883 0.92655 0.93526 0.86450 0.74367 0.75795 0.92538 0.88537 0.84675 0.83653 0.84565 0.88059 0.92200 0.90711 0.91004 0.91521 0.95215 0.92006 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.71 127.77 1.37 2.61 16 2 N -0.71 -13.18 4.62 -484.53 -2.24 -15.42 16 3 C 0.51 14.81 6.31 87.66 0.55 15.37 16 4 O -0.57 -21.44 16.09 -3.04 -0.05 -21.49 16 5 C 0.13 4.08 2.22 44.24 0.10 4.17 16 6 H 0.11 3.13 7.58 -2.39 -0.02 3.11 16 7 N -0.71 -28.33 4.78 -446.10 -2.13 -30.46 16 8 C 0.54 24.10 5.23 87.66 0.46 24.56 16 9 O -0.57 -25.81 12.31 -3.06 -0.04 -25.85 16 10 C 0.05 2.72 2.31 -13.04 -0.03 2.69 16 11 H 0.05 3.00 7.25 -2.38 -0.02 2.98 16 12 C -0.51 -27.17 7.68 25.60 0.20 -26.97 16 13 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 14 C 0.03 1.78 5.45 84.65 0.46 2.24 16 15 N -0.90 -50.56 12.91 21.45 0.28 -50.28 16 16 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 C -0.03 -1.63 4.37 -19.87 -0.09 -1.72 16 21 C -0.10 -4.65 8.06 22.27 0.18 -4.47 16 22 C -0.14 -5.12 10.05 22.27 0.22 -4.90 16 23 C -0.14 -4.93 10.05 22.27 0.22 -4.70 16 24 C -0.13 -4.95 10.05 22.27 0.22 -4.72 16 25 C -0.14 -6.24 9.67 22.27 0.22 -6.03 16 26 C -0.09 -2.61 2.67 -10.79 -0.03 -2.63 16 27 C -0.14 -2.61 8.91 71.98 0.64 -1.97 16 28 C -0.13 -4.18 7.69 71.98 0.55 -3.62 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.42 5.03 8.83 -92.71 -0.82 4.21 16 33 H 0.41 17.51 7.72 -92.71 -0.72 16.80 16 34 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 35 H 0.10 4.49 8.02 -2.91 -0.02 4.47 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 37 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 38 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 39 H 0.10 4.65 7.95 -2.91 -0.02 4.63 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.07 1.07 6.58 -2.39 -0.02 1.05 16 44 H 0.03 1.17 5.89 -2.39 -0.01 1.15 16 45 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.06 1.98 7.26 -2.39 -0.02 1.97 16 Total: -1.00 -68.72 377.36 2.56 -66.16 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.54 Total: 42.21 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 5.25 Total: -10.11 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.09 Total: -96.16 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.09 Total: -47.34 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -68.72 2.56 -66.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412078895.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.248 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds