Wall clock time and date at job start Tue Mar 31 2020 12:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34783 * 119.99915 * 2 1 4 4 O 1.21284 * 119.99904 * 355.59175 * 3 2 1 5 5 C 1.50700 * 120.00029 * 175.58614 * 3 2 1 6 6 H 1.09007 * 109.46593 * 31.92112 * 5 3 2 7 7 N 1.46495 * 109.47250 * 151.91739 * 5 3 2 8 8 C 1.34770 * 120.00576 * 205.00039 * 7 5 3 9 9 O 1.21289 * 119.99759 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00494 * 180.02562 * 8 7 5 11 11 H 1.08994 * 109.47188 * 59.99890 * 10 8 7 12 12 C 1.50699 * 109.46797 * 300.00031 * 10 8 7 13 13 H 1.08002 * 120.00193 * 335.01981 * 12 10 8 14 14 C 1.37881 * 120.00098 * 155.02187 * 12 10 8 15 15 N 1.31512 * 120.00113 * 185.38315 * 14 12 10 16 16 Si 1.86803 * 119.99682 * 5.38138 * 14 12 10 17 17 H 1.48500 * 109.46806 * 92.63468 * 16 14 12 18 18 H 1.48500 * 109.47056 * 212.62900 * 16 14 12 19 19 H 1.48496 * 109.47446 * 332.63439 * 16 14 12 20 20 C 1.50700 * 109.47322 * 180.02562 * 10 8 7 21 21 C 1.38234 * 120.00255 * 66.37701 * 20 10 8 22 22 C 1.38234 * 119.99742 * 179.79314 * 21 20 10 23 23 C 1.38239 * 120.00358 * 0.43530 * 22 21 20 24 24 C 1.38238 * 119.99605 * 359.81661 * 23 22 21 25 25 C 1.38231 * 120.00313 * 359.97438 * 24 23 22 26 26 C 1.52999 * 109.47353 * 271.92432 * 5 3 2 27 27 C 1.52999 * 109.47295 * 62.02602 * 26 5 3 28 28 C 1.53000 * 109.47170 * 182.02862 * 26 5 3 29 29 H 1.08996 * 109.46583 * 299.71948 * 1 2 3 30 30 H 1.09000 * 109.47006 * 59.71754 * 1 2 3 31 31 H 1.08992 * 109.46696 * 179.72373 * 1 2 3 32 32 H 0.97000 * 120.00214 * 180.28468 * 2 1 3 33 33 H 0.97001 * 119.99658 * 25.00571 * 7 5 3 34 34 H 0.97003 * 120.00114 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99700 * 359.97438 * 21 20 10 36 36 H 1.07997 * 119.99905 * 180.27274 * 22 21 20 37 37 H 1.07993 * 120.00035 * 179.83446 * 23 22 21 38 38 H 1.07999 * 119.99671 * 179.97438 * 24 23 22 39 39 H 1.07994 * 120.00381 * 179.97438 * 25 24 23 40 40 H 1.09007 * 109.46528 * 302.02790 * 26 5 3 41 41 H 1.09000 * 109.47104 * 53.98550 * 27 26 5 42 42 H 1.08998 * 109.47416 * 173.98844 * 27 26 5 43 43 H 1.09008 * 109.47010 * 293.98693 * 27 26 5 44 44 H 1.08997 * 109.46919 * 59.99956 * 28 26 5 45 45 H 1.09001 * 109.46647 * 179.97438 * 28 26 5 46 46 H 1.09000 * 109.46720 * 299.99596 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5352 2.2160 -0.0807 5 6 3.6426 1.1692 0.1004 6 1 4.0402 0.2771 -0.3836 7 7 4.1747 2.3625 -0.5621 8 6 5.4318 2.3595 -1.0480 9 8 6.1225 1.3687 -0.9371 10 6 5.9794 3.5872 -1.7291 11 1 5.9686 4.4249 -1.0317 12 6 5.1270 3.9196 -2.9266 13 1 4.5548 3.1441 -3.4141 14 6 5.0777 5.2136 -3.4000 15 7 4.2544 5.5255 -4.3769 16 14 6.1804 6.5238 -2.6536 17 1 7.4425 6.6104 -3.4314 18 1 5.4853 7.8355 -2.6904 19 1 6.4901 6.1670 -1.2458 20 6 7.3939 3.3243 -2.1773 21 6 7.6434 2.3918 -3.1668 22 6 8.9406 2.1538 -3.5809 23 6 9.9892 2.8417 -2.9993 24 6 9.7401 3.7705 -2.0061 25 6 8.4425 4.0117 -1.5950 26 6 4.0554 1.1770 1.5737 27 6 3.5427 -0.0941 2.2537 28 6 5.5810 1.2300 1.6756 29 1 -0.3632 0.5095 0.8925 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3632 -1.0276 -0.0050 32 1 1.9501 -0.8400 -0.0042 33 1 3.6223 3.1548 -0.6511 34 1 4.2195 6.4360 -4.7097 35 1 6.8246 1.8514 -3.6183 36 1 9.1352 1.4284 -4.3570 37 1 11.0028 2.6538 -3.3210 38 1 10.5593 4.3076 -1.5514 39 1 8.2480 4.7369 -0.8188 40 1 3.6277 2.0503 2.0662 41 1 3.8837 -0.9669 1.6969 42 1 3.9260 -0.1408 3.2730 43 1 2.4529 -0.0801 2.2757 44 1 5.9462 2.1356 1.1912 45 1 5.8750 1.2360 2.7252 46 1 6.0086 0.3567 1.1831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412078906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:17 Heat of formation + Delta-G solvation = -77.197132 kcal Electronic energy + Delta-G solvation = -27793.912869 eV Core-core repulsion = 24068.219719 eV Total energy + Delta-G solvation = -3725.693150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.71349 -40.57183 -39.39911 -36.98864 -35.78033 -35.51956 -34.07350 -33.27324 -31.62051 -29.95824 -29.11715 -27.76935 -26.70308 -25.27445 -23.37145 -22.63835 -22.08106 -21.12995 -21.00142 -19.11533 -18.93260 -17.85616 -17.35949 -17.28696 -16.80058 -16.43202 -16.28966 -15.99240 -15.57927 -15.43634 -15.12790 -14.89611 -14.42024 -14.30552 -14.08757 -13.93074 -13.69399 -13.67656 -13.50918 -13.40832 -13.09836 -13.05724 -12.85134 -12.71868 -12.49229 -12.07757 -12.00211 -11.98480 -11.81589 -11.59053 -11.40246 -11.03520 -10.86717 -10.51397 -10.18389 -9.93494 -9.62901 -9.36323 -8.36202 -6.43541 0.64697 0.71006 1.31308 1.36231 1.40259 1.41485 1.83456 2.02723 2.28779 2.56487 2.96611 3.15482 3.60711 3.79143 3.91757 4.10838 4.18451 4.22158 4.28769 4.33089 4.40317 4.43577 4.50598 4.61117 4.63625 4.67486 4.82196 4.82906 4.92263 4.93309 4.96661 4.99775 5.13589 5.20175 5.32090 5.33408 5.36595 5.39625 5.46653 5.56123 5.70879 5.75296 5.95450 6.18750 6.30584 6.41524 6.58284 6.62790 7.11103 7.21594 7.41447 8.78388 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.004867 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.693557 B = 5751.979198 C = 6926.459398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.715 5.715 3 C 0.512 3.488 4 O -0.572 6.572 5 C 0.133 3.867 6 H 0.105 0.895 7 N -0.713 5.713 8 C 0.545 3.455 9 O -0.563 6.563 10 C 0.022 3.978 11 H 0.072 0.928 12 C -0.500 4.500 13 H 0.037 0.963 14 C 0.035 3.965 15 N -0.932 5.932 16 Si 0.921 3.079 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.232 1.232 20 C -0.053 4.053 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.126 4.126 25 C -0.154 4.154 26 C -0.093 4.093 27 C -0.143 4.143 28 C -0.130 4.130 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.117 0.883 32 H 0.419 0.581 33 H 0.407 0.593 34 H 0.269 0.731 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -11.800 12.626 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.298 3.702 4 O -0.450 6.450 5 C 0.024 3.976 6 H 0.123 0.877 7 N -0.365 5.365 8 C 0.333 3.667 9 O -0.442 6.442 10 C 0.001 3.999 11 H 0.090 0.910 12 C -0.538 4.538 13 H 0.056 0.944 14 C -0.166 4.166 15 N -0.570 5.570 16 Si 0.745 3.255 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.155 1.155 20 C -0.054 4.054 21 C -0.118 4.118 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.172 4.172 26 C -0.113 4.113 27 C -0.201 4.201 28 C -0.187 4.187 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.256 0.744 33 H 0.243 0.757 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.313 -11.641 12.541 17.161 hybrid contribution -0.249 1.018 -0.571 1.194 sum 1.064 -10.623 11.970 16.039 Atomic orbital electron populations 1.21728 0.78166 1.04576 1.01510 1.45720 1.08624 1.08036 1.74357 1.20763 0.89908 0.84340 0.75219 1.90714 1.70740 1.33133 1.50447 1.21023 0.89737 0.90957 0.95872 0.87748 1.45756 1.14952 1.16652 1.59187 1.20610 0.80822 0.89608 0.75634 1.90570 1.59064 1.35704 1.58904 1.18482 0.91200 0.93967 0.96272 0.90996 1.20476 1.26194 0.94645 1.12487 0.94420 1.25678 0.95591 1.00344 0.94937 1.70004 1.37646 1.20582 1.28757 0.86125 0.79443 0.78479 0.81454 1.19553 1.21158 1.15497 1.20025 0.94722 0.95162 0.95525 1.20821 0.96697 0.97583 0.96707 1.21356 0.92336 1.00713 1.00605 1.21349 0.99626 0.97052 0.97302 1.21353 0.96187 0.98762 0.98032 1.21257 0.93450 1.01326 1.01167 1.21416 0.97252 1.00812 0.91847 1.21877 1.01268 0.95524 1.01402 1.21770 0.94010 1.01675 1.01254 0.92372 0.93944 0.86441 0.74435 0.75688 0.92202 0.89084 0.84712 0.83230 0.83521 0.86326 0.91479 0.90882 0.90560 0.91811 0.95192 0.91351 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.39 10.71 127.77 1.37 2.76 16 2 N -0.71 -14.31 4.70 -484.51 -2.28 -16.59 16 3 C 0.51 15.36 6.30 87.66 0.55 15.92 16 4 O -0.57 -22.26 16.07 -3.04 -0.05 -22.31 16 5 C 0.13 4.05 2.23 44.25 0.10 4.15 16 6 H 0.10 3.12 7.58 -2.38 -0.02 3.10 16 7 N -0.71 -27.98 4.81 -446.11 -2.15 -30.13 16 8 C 0.54 23.68 5.32 87.66 0.47 24.15 16 9 O -0.56 -24.85 12.56 -3.06 -0.04 -24.89 16 10 C 0.02 1.04 1.89 -13.03 -0.02 1.02 16 11 H 0.07 3.30 5.40 -2.39 -0.01 3.29 16 12 C -0.50 -27.65 8.03 25.60 0.21 -27.44 16 13 H 0.04 2.35 8.05 -2.91 -0.02 2.33 16 14 C 0.03 1.96 5.47 84.66 0.46 2.42 16 15 N -0.93 -56.89 13.96 21.45 0.30 -56.59 16 16 Si 0.92 43.17 26.03 68.60 1.79 44.95 16 17 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.23 -9.73 5.59 99.48 0.56 -9.17 16 20 C -0.05 -2.38 3.55 -19.86 -0.07 -2.45 16 21 C -0.10 -4.39 8.32 22.27 0.19 -4.21 16 22 C -0.13 -4.76 10.05 22.27 0.22 -4.53 16 23 C -0.14 -4.24 10.05 22.27 0.22 -4.01 16 24 C -0.13 -4.09 10.05 22.27 0.22 -3.86 16 25 C -0.15 -6.00 8.53 22.27 0.19 -5.81 16 26 C -0.09 -2.36 2.67 -10.79 -0.03 -2.39 16 27 C -0.14 -2.41 8.57 71.98 0.62 -1.79 16 28 C -0.13 -3.64 7.70 71.98 0.55 -3.08 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.42 5.63 8.73 -92.71 -0.81 4.82 16 33 H 0.41 17.31 7.71 -92.71 -0.71 16.60 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.09 4.35 7.88 -2.91 -0.02 4.33 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 39 H 0.12 4.29 7.59 -2.91 -0.02 4.27 16 40 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.06 0.99 6.90 -2.38 -0.02 0.97 16 44 H 0.03 1.01 5.83 -2.39 -0.01 0.99 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.06 1.73 7.39 -2.39 -0.02 1.71 16 Total: -1.00 -74.12 369.90 2.14 -71.98 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: -0.68 Total: 42.74 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 5.25 Total: -9.17 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -4.12 Total: -103.30 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -0.09 Total: -47.19 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.79 Total: 44.95 kcal Total: -74.12 2.14 -71.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412078906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.221 kcal (2) G-P(sol) polarization free energy of solvation -74.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds