Wall clock time and date at job start Tue Mar 31 2020 13:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 H 1.09001 * 109.99540 * 305.11325 * 3 2 1 5 5 C 1.54316 * 109.77356 * 66.26735 * 3 2 1 6 6 C 1.55156 * 102.86281 * 141.88773 * 5 3 2 7 7 C 1.54912 * 101.57992 * 324.30502 * 6 5 3 8 8 N 1.47016 * 109.88142 * 184.01851 * 3 2 1 9 9 C 1.34780 * 125.64972 * 61.67746 * 8 3 2 10 10 O 1.21582 * 119.99999 * 4.64165 * 9 8 3 11 11 N 1.34780 * 119.99714 * 184.64428 * 9 8 3 12 12 C 1.46506 * 119.99517 * 179.72472 * 11 9 8 13 13 C 1.50701 * 109.47014 * 180.27625 * 12 11 9 14 14 C 1.38317 * 119.96692 * 269.72570 * 13 12 11 15 15 C 1.38280 * 120.14192 * 179.76666 * 14 13 12 16 16 C 1.38125 * 120.06352 * 0.50251 * 15 14 13 17 17 C 1.38853 * 119.93003 * 359.75337 * 16 15 14 18 18 O 1.35759 * 120.06810 * 180.02562 * 17 16 15 19 19 C 1.34838 * 116.99747 * 354.55228 * 18 17 16 20 20 H 1.08000 * 119.99728 * 5.09127 * 19 18 17 21 21 C 1.38644 * 119.99800 * 185.08913 * 19 18 17 22 22 N 1.31554 * 119.99934 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 120.00292 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46986 * 90.00145 * 23 21 19 25 25 H 1.48497 * 109.47179 * 210.00099 * 23 21 19 26 26 H 1.48500 * 109.46922 * 329.99935 * 23 21 19 27 27 C 1.38084 * 119.96507 * 89.99702 * 13 12 11 28 28 H 1.08998 * 109.46784 * 64.81500 * 1 2 3 29 29 H 1.09003 * 109.46953 * 184.81382 * 1 2 3 30 30 H 1.09003 * 109.47244 * 304.81212 * 1 2 3 31 31 H 1.09000 * 109.47562 * 239.99753 * 2 1 3 32 32 H 1.09007 * 109.46933 * 119.99664 * 2 1 3 33 33 H 1.08996 * 110.92610 * 23.47029 * 5 3 2 34 34 H 1.08997 * 110.73747 * 260.21678 * 5 3 2 35 35 H 1.08998 * 111.00467 * 206.23065 * 6 5 3 36 36 H 1.09000 * 111.03671 * 82.39085 * 6 5 3 37 37 H 1.09003 * 110.36238 * 278.17031 * 7 6 5 38 38 H 1.08994 * 110.46192 * 155.89762 * 7 6 5 39 39 H 0.96996 * 119.99976 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.46724 * 300.27393 * 12 11 9 41 41 H 1.08991 * 109.46969 * 60.27574 * 12 11 9 42 42 H 1.08004 * 119.92775 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.97164 * 180.23402 * 15 14 13 44 44 H 1.08003 * 120.02887 * 179.76352 * 16 15 14 45 45 H 0.97008 * 119.99976 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.03186 * 359.95909 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9903 -0.8379 5 6 1.6630 2.1296 1.3294 6 6 2.9105 3.0003 1.6341 7 6 4.0554 2.0973 1.1110 8 7 3.5070 1.4542 -0.0969 9 6 4.2304 0.9635 -1.1228 10 8 3.6689 0.5338 -2.1119 11 7 5.5762 0.9491 -1.0521 12 6 6.3623 0.4101 -2.1648 13 6 7.8298 0.5033 -1.8345 14 6 8.5466 1.6329 -2.1856 15 6 9.8921 1.7243 -1.8801 16 6 10.5268 0.6826 -1.2322 17 6 9.8112 -0.4550 -0.8831 18 8 10.4321 -1.4803 -0.2458 19 6 11.7667 -1.3804 -0.0815 20 1 12.2809 -0.4775 -0.3759 21 6 12.4788 -2.4368 0.4654 22 7 13.7810 -2.3396 0.6253 23 14 11.5892 -3.9984 0.9754 24 1 11.5504 -4.9425 -0.1702 25 1 12.3076 -4.6285 2.1120 26 1 10.2026 -3.6653 1.3896 27 6 8.4586 -0.5415 -1.1867 28 1 -0.3633 0.4373 -0.9300 29 1 -0.3633 -1.0241 0.0862 30 1 -0.3634 0.5867 0.8438 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5051 1.3930 2.1171 34 1 0.7783 2.7537 1.2039 35 1 3.0110 3.1778 2.7048 36 1 2.8740 3.9417 1.0859 37 1 4.3160 1.3455 1.8560 38 1 4.9289 2.6979 0.8576 39 1 6.0241 1.2915 -0.2629 40 1 6.0923 -0.6331 -2.3286 41 1 6.1559 0.9850 -3.0674 42 1 8.0535 2.4468 -2.6965 43 1 10.4483 2.6092 -2.1521 44 1 11.5787 0.7529 -0.9972 45 1 14.2792 -3.0786 1.0083 46 1 7.8992 -1.4248 -0.9162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647089774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:39 Heat of formation + Delta-G solvation = -36.669201 kcal Electronic energy + Delta-G solvation = -26120.031825 eV Core-core repulsion = 22396.096098 eV Total energy + Delta-G solvation = -3723.935727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52634 -39.33242 -38.05920 -36.89066 -34.63689 -33.58322 -32.45229 -31.88790 -30.52462 -29.37848 -28.08244 -26.02161 -25.14566 -23.97723 -22.51936 -21.85712 -21.16556 -20.65056 -19.68828 -18.36199 -17.73923 -17.05911 -16.70475 -15.78501 -15.39688 -15.15345 -14.96314 -14.67879 -14.53762 -14.12336 -13.91482 -13.82242 -13.54054 -13.43883 -13.25783 -12.97045 -12.58802 -12.52823 -12.40769 -12.18421 -11.99083 -11.81755 -11.57252 -11.47521 -11.43724 -11.03251 -10.94707 -10.88569 -10.76753 -10.74338 -10.22248 -10.11410 -9.47367 -9.10857 -8.93969 -8.59752 -8.34965 -7.49214 -6.47358 -4.14784 1.76580 2.13970 2.66141 3.18310 3.20285 3.22668 3.36381 3.92985 4.18821 4.22705 4.30599 4.46514 4.53298 4.66300 4.79211 4.96436 5.00371 5.02843 5.11984 5.14797 5.18776 5.28555 5.42370 5.43340 5.44693 5.55391 5.64367 5.67657 5.75066 5.79799 5.81485 5.84963 5.97505 6.00985 6.06590 6.14361 6.28659 6.41814 6.53097 6.67011 6.97101 7.01850 7.11516 7.19520 7.48736 7.72060 7.95534 7.96707 8.60029 8.87624 9.48641 10.60062 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002680 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.422264 B =10443.547931 C =11084.318455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.158 3.842 4 H 0.073 0.927 5 C -0.128 4.128 6 C -0.132 4.132 7 C 0.097 3.903 8 N -0.637 5.637 9 C 0.722 3.278 10 O -0.591 6.591 11 N -0.736 5.736 12 C 0.187 3.813 13 C -0.075 4.075 14 C -0.185 4.185 15 C -0.078 4.078 16 C -0.212 4.212 17 C 0.156 3.844 18 O -0.216 6.216 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.170 4.170 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.398 0.602 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.134 0.866 45 H 0.280 0.720 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.021 10.133 2.149 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.054 3.946 4 H 0.091 0.909 5 C -0.166 4.166 6 C -0.170 4.170 7 C -0.027 4.027 8 N -0.375 5.375 9 C 0.424 3.576 10 O -0.469 6.469 11 N -0.391 5.391 12 C 0.063 3.937 13 C -0.075 4.075 14 C -0.205 4.205 15 C -0.096 4.096 16 C -0.232 4.232 17 C 0.104 3.896 18 O -0.121 6.121 19 C -0.467 4.467 20 H 0.124 0.876 21 C -0.139 4.139 22 N -0.515 5.515 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.184 1.184 27 C -0.190 4.190 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.232 0.768 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.152 0.848 45 H 0.090 0.910 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.236 9.440 1.500 24.204 hybrid contribution 0.357 -0.444 0.655 0.868 sum -21.880 8.996 2.155 23.755 Atomic orbital electron populations 1.21717 0.95252 1.01791 1.01739 1.21923 0.95976 0.96446 1.03210 1.21405 0.79049 0.96429 0.97724 0.90862 1.22742 0.98218 0.99066 0.96558 1.22751 0.94203 0.98245 1.01779 1.22294 0.97261 0.95764 0.87350 1.47658 1.06699 1.63382 1.19790 1.15437 0.81401 0.78713 0.82041 1.90902 1.70589 1.54062 1.31349 1.45297 1.04066 1.67467 1.22260 1.19995 0.86056 0.99339 0.88270 1.19283 0.93737 0.94593 0.99920 1.20558 0.94648 0.98240 1.07016 1.20806 0.94219 0.97591 0.96997 1.21366 1.01630 0.94602 1.05562 1.19056 0.91642 0.87987 0.90923 1.83582 1.23541 1.39078 1.65889 1.20760 0.78289 1.04547 1.43058 0.87591 1.24464 0.94858 0.98638 0.95958 1.69644 1.05681 1.33440 1.42782 0.86185 0.80439 0.81752 0.78559 1.19810 1.20739 1.18379 1.20089 0.92740 1.00174 1.05981 0.92631 0.92602 0.92679 0.90415 0.92026 0.90306 0.90037 0.89758 0.90538 0.91386 0.90761 0.76763 0.91038 0.91039 0.87288 0.86975 0.84831 0.90975 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.82 37.16 0.36 -0.75 16 2 C -0.14 -1.36 5.39 -26.73 -0.14 -1.50 16 3 C 0.16 1.51 2.89 -66.96 -0.19 1.32 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.13 -0.81 5.47 -24.90 -0.14 -0.94 16 6 C -0.13 -0.79 7.08 -24.58 -0.17 -0.97 16 7 C 0.10 0.79 6.48 -2.53 -0.02 0.77 16 8 N -0.64 -7.14 3.07 -168.70 -0.52 -7.66 16 9 C 0.72 10.43 8.22 -86.91 -0.71 9.71 16 10 O -0.59 -10.54 15.51 5.29 0.08 -10.46 16 11 N -0.74 -9.85 5.51 -66.41 -0.37 -10.22 16 12 C 0.19 2.70 5.80 -5.19 -0.03 2.67 16 13 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 14 C -0.19 -2.90 9.70 -39.54 -0.38 -3.29 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 16 C -0.21 -4.35 9.17 -39.40 -0.36 -4.71 16 17 C 0.16 3.45 6.65 -39.11 -0.26 3.19 16 18 O -0.22 -5.54 8.59 0.00 0.00 -5.54 16 19 C -0.39 -10.76 9.95 30.88 0.31 -10.45 16 20 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -24.95 13.96 55.48 0.77 -24.17 16 23 Si 0.91 21.36 28.62 -169.99 -4.86 16.49 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 27 C -0.17 -3.22 9.65 -39.40 -0.38 -3.60 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.33 7.30 -51.93 -0.38 -0.05 16 31 H 0.08 1.01 6.90 -51.93 -0.36 0.66 16 32 H 0.06 0.60 8.05 -51.93 -0.42 0.19 16 33 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.57 7.49 -51.93 -0.39 0.19 16 39 H 0.40 4.79 7.06 -40.82 -0.29 4.50 16 40 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 41 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.13 2.89 5.64 -52.48 -0.30 2.60 16 45 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -31.05 374.90 -9.43 -40.47 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.02 Total: 5.77 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.16 Total: -10.34 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: -0.11 Total: -42.05 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.08 Total: -16.00 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.86 Total: 16.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.05 -9.43 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647089774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.805 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds