Wall clock time and date at job start Tue Mar 31 2020 13:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 H 1.09001 * 109.99540 * 305.11325 * 3 2 1 5 5 C 1.54316 * 109.77356 * 66.26735 * 3 2 1 6 6 C 1.55156 * 102.86281 * 141.88773 * 5 3 2 7 7 C 1.54912 * 101.57992 * 324.30502 * 6 5 3 8 8 N 1.47016 * 109.88142 * 184.01851 * 3 2 1 9 9 C 1.34780 * 125.64972 * 61.67746 * 8 3 2 10 10 O 1.21582 * 119.99999 * 4.64165 * 9 8 3 11 11 N 1.34780 * 119.99714 * 184.64428 * 9 8 3 12 12 C 1.46506 * 119.99517 * 179.72472 * 11 9 8 13 13 C 1.50701 * 109.47014 * 180.27625 * 12 11 9 14 14 C 1.38317 * 119.96692 * 269.72570 * 13 12 11 15 15 C 1.38280 * 120.14192 * 179.76666 * 14 13 12 16 16 C 1.38125 * 120.06352 * 0.50251 * 15 14 13 17 17 C 1.38853 * 119.93003 * 359.75337 * 16 15 14 18 18 O 1.35759 * 120.06810 * 180.02562 * 17 16 15 19 19 C 1.34838 * 116.99747 * 354.55228 * 18 17 16 20 20 H 1.08000 * 119.99728 * 5.09127 * 19 18 17 21 21 C 1.38644 * 119.99800 * 185.08913 * 19 18 17 22 22 N 1.31554 * 119.99934 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 120.00292 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46986 * 90.00145 * 23 21 19 25 25 H 1.48497 * 109.47179 * 210.00099 * 23 21 19 26 26 H 1.48500 * 109.46922 * 329.99935 * 23 21 19 27 27 C 1.38084 * 119.96507 * 89.99702 * 13 12 11 28 28 H 1.08998 * 109.46784 * 64.81500 * 1 2 3 29 29 H 1.09003 * 109.46953 * 184.81382 * 1 2 3 30 30 H 1.09003 * 109.47244 * 304.81212 * 1 2 3 31 31 H 1.09000 * 109.47562 * 239.99753 * 2 1 3 32 32 H 1.09007 * 109.46933 * 119.99664 * 2 1 3 33 33 H 1.08996 * 110.92610 * 23.47029 * 5 3 2 34 34 H 1.08997 * 110.73747 * 260.21678 * 5 3 2 35 35 H 1.08998 * 111.00467 * 206.23065 * 6 5 3 36 36 H 1.09000 * 111.03671 * 82.39085 * 6 5 3 37 37 H 1.09003 * 110.36238 * 278.17031 * 7 6 5 38 38 H 1.08994 * 110.46192 * 155.89762 * 7 6 5 39 39 H 0.96996 * 119.99976 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.46724 * 300.27393 * 12 11 9 41 41 H 1.08991 * 109.46969 * 60.27574 * 12 11 9 42 42 H 1.08004 * 119.92775 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.97164 * 180.23402 * 15 14 13 44 44 H 1.08003 * 120.02887 * 179.76352 * 16 15 14 45 45 H 0.97008 * 119.99976 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.03186 * 359.95909 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9903 -0.8379 5 6 1.6630 2.1296 1.3294 6 6 2.9105 3.0003 1.6341 7 6 4.0554 2.0973 1.1110 8 7 3.5070 1.4542 -0.0969 9 6 4.2304 0.9635 -1.1228 10 8 3.6689 0.5338 -2.1119 11 7 5.5762 0.9491 -1.0521 12 6 6.3623 0.4101 -2.1648 13 6 7.8298 0.5033 -1.8345 14 6 8.5466 1.6329 -2.1856 15 6 9.8921 1.7243 -1.8801 16 6 10.5268 0.6826 -1.2322 17 6 9.8112 -0.4550 -0.8831 18 8 10.4321 -1.4803 -0.2458 19 6 11.7667 -1.3804 -0.0815 20 1 12.2809 -0.4775 -0.3759 21 6 12.4788 -2.4368 0.4654 22 7 13.7810 -2.3396 0.6253 23 14 11.5892 -3.9984 0.9754 24 1 11.5504 -4.9425 -0.1702 25 1 12.3076 -4.6285 2.1120 26 1 10.2026 -3.6653 1.3896 27 6 8.4586 -0.5415 -1.1867 28 1 -0.3633 0.4373 -0.9300 29 1 -0.3633 -1.0241 0.0862 30 1 -0.3634 0.5867 0.8438 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5051 1.3930 2.1171 34 1 0.7783 2.7537 1.2039 35 1 3.0110 3.1778 2.7048 36 1 2.8740 3.9417 1.0859 37 1 4.3160 1.3455 1.8560 38 1 4.9289 2.6979 0.8576 39 1 6.0241 1.2915 -0.2629 40 1 6.0923 -0.6331 -2.3286 41 1 6.1559 0.9850 -3.0674 42 1 8.0535 2.4468 -2.6965 43 1 10.4483 2.6092 -2.1521 44 1 11.5787 0.7529 -0.9972 45 1 14.2792 -3.0786 1.0083 46 1 7.8992 -1.4248 -0.9162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647089774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:38 Heat of formation + Delta-G solvation = -55.061312 kcal Electronic energy + Delta-G solvation = -26120.829367 eV Core-core repulsion = 22396.096098 eV Total energy + Delta-G solvation = -3724.733269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51261 -40.91154 -39.11748 -38.38374 -35.84967 -34.49859 -34.36069 -32.78960 -31.77146 -30.92514 -28.74312 -27.49338 -26.83723 -24.81148 -23.37408 -23.21014 -22.37192 -21.73381 -20.70265 -19.73940 -19.31195 -18.59578 -17.57370 -16.92441 -16.89084 -16.57469 -16.09946 -15.74947 -15.72666 -15.56304 -15.43994 -15.00128 -14.55318 -14.50446 -14.24977 -14.21692 -13.96570 -13.82482 -13.64910 -13.18981 -13.13090 -12.98229 -12.59929 -12.54365 -12.48261 -12.38311 -12.11733 -12.07221 -11.95621 -11.58237 -11.49517 -11.33989 -11.24435 -10.92743 -10.25615 -9.82368 -9.49880 -9.14305 -8.51145 -6.23890 0.31026 0.62887 1.30706 1.34036 1.50359 1.66505 2.10451 2.26459 2.71353 2.95887 3.01052 3.21430 3.64115 3.68123 3.75509 3.93286 4.04515 4.18410 4.25594 4.26002 4.36738 4.39970 4.48003 4.51731 4.57110 4.62250 4.67543 4.70396 4.81665 4.91125 4.97787 5.02660 5.11318 5.16036 5.16756 5.23019 5.27450 5.35297 5.39263 5.42047 5.51007 5.61566 5.67266 5.73668 5.87658 6.04739 6.17605 6.83442 6.94358 7.51805 7.57129 8.60247 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002680 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.422264 B =10443.547931 C =11084.318455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.150 3.850 4 H 0.061 0.939 5 C -0.119 4.119 6 C -0.123 4.123 7 C 0.088 3.912 8 N -0.636 5.636 9 C 0.716 3.284 10 O -0.631 6.631 11 N -0.730 5.730 12 C 0.194 3.806 13 C -0.060 4.060 14 C -0.158 4.158 15 C -0.072 4.072 16 C -0.226 4.226 17 C 0.120 3.880 18 O -0.245 6.245 19 C -0.398 4.398 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.922 5.922 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.267 1.267 26 H -0.264 1.264 27 C -0.169 4.169 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.406 0.594 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.112 0.888 45 H 0.285 0.715 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.865 11.983 2.659 27.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.046 3.954 4 H 0.079 0.921 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.035 4.035 8 N -0.374 5.374 9 C 0.418 3.582 10 O -0.513 6.513 11 N -0.386 5.386 12 C 0.070 3.930 13 C -0.061 4.061 14 C -0.176 4.176 15 C -0.090 4.090 16 C -0.246 4.246 17 C 0.071 3.929 18 O -0.153 6.153 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.192 1.192 26 H -0.188 1.188 27 C -0.189 4.189 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.242 0.758 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.130 0.870 45 H 0.094 0.906 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.111 11.341 2.033 27.628 hybrid contribution 1.030 -0.761 0.341 1.325 sum -24.081 10.580 2.374 26.410 Atomic orbital electron populations 1.21684 0.93334 1.02378 1.02543 1.21861 0.97669 0.96441 1.01226 1.21612 0.78088 0.96282 0.99396 0.92106 1.22743 0.99108 0.99265 0.94527 1.22762 0.92656 0.97612 1.03066 1.22560 0.98450 0.96267 0.86186 1.47777 1.07486 1.62380 1.19712 1.15607 0.81548 0.78720 0.82336 1.90872 1.71314 1.55852 1.33230 1.45119 1.03853 1.67357 1.22242 1.19867 0.84738 0.99356 0.89017 1.19440 0.94601 0.93782 0.98289 1.21022 0.93893 0.98421 1.04306 1.21144 0.94977 0.97429 0.95474 1.21409 1.00912 0.95591 1.06680 1.19544 0.92891 0.88092 0.92332 1.83528 1.22295 1.40876 1.68574 1.20711 0.79492 1.04076 1.43160 0.89792 1.25230 0.95563 1.01600 0.96277 1.69723 1.06926 1.34715 1.44873 0.85266 0.78983 0.78127 0.78643 1.19310 1.19174 1.18804 1.20250 0.91492 1.01239 1.05897 0.92963 0.92431 0.90419 0.94286 0.92017 0.89376 0.88070 0.87526 0.90217 0.90953 0.90218 0.75840 0.91838 0.89946 0.83424 0.83669 0.87034 0.90568 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.82 71.98 0.71 -1.23 16 2 C -0.13 -2.57 5.39 30.60 0.17 -2.40 16 3 C 0.15 2.64 2.89 45.34 0.13 2.77 16 4 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 5 C -0.12 -1.10 5.47 31.78 0.17 -0.93 16 6 C -0.12 -1.04 7.08 31.99 0.23 -0.81 16 7 C 0.09 1.20 6.48 86.86 0.56 1.77 16 8 N -0.64 -13.33 3.07 -805.90 -2.47 -15.80 16 9 C 0.72 19.97 8.22 179.05 1.47 21.44 16 10 O -0.63 -22.51 15.51 -3.97 -0.06 -22.57 16 11 N -0.73 -18.18 5.51 -482.29 -2.66 -20.84 16 12 C 0.19 5.19 5.80 85.63 0.50 5.68 16 13 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 14 C -0.16 -4.32 9.70 22.30 0.22 -4.11 16 15 C -0.07 -2.27 10.04 22.25 0.22 -2.05 16 16 C -0.23 -9.38 9.17 22.39 0.21 -9.18 16 17 C 0.12 5.42 6.65 22.57 0.15 5.57 16 18 O -0.25 -13.04 8.59 -22.92 -0.20 -13.24 16 19 C -0.40 -23.00 9.95 67.92 0.68 -22.32 16 20 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 21 C 0.01 0.68 5.49 84.83 0.47 1.15 16 22 N -0.92 -54.42 13.96 21.61 0.30 -54.12 16 23 Si 0.97 45.15 28.62 68.60 1.96 47.11 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 27 C -0.17 -6.29 9.65 22.39 0.22 -6.07 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.71 7.30 -2.39 -0.02 0.70 16 31 H 0.04 1.05 6.90 -2.39 -0.02 1.03 16 32 H 0.06 1.15 8.05 -2.38 -0.02 1.13 16 33 H 0.09 0.70 7.79 -2.39 -0.02 0.68 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.01 7.49 -2.39 -0.02 0.99 16 39 H 0.41 8.82 7.06 -92.71 -0.65 8.16 16 40 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 41 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 42 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 45 H 0.28 15.43 8.31 -92.70 -0.77 14.66 16 46 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -71.55 374.90 3.19 -68.36 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.33 Total: 23.72 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 5.98 Total: -12.62 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -4.82 Total: -90.75 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.26 Total: -35.81 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.96 Total: 47.11 kcal Total: -71.55 3.19 -68.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647089774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.296 kcal (2) G-P(sol) polarization free energy of solvation -71.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds