Wall clock time and date at job start Tue Mar 31 2020 13:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 H 1.09005 * 109.87251 * 55.14315 * 3 2 1 5 5 C 1.54422 * 109.88057 * 293.96860 * 3 2 1 6 6 C 1.55162 * 102.89454 * 218.39305 * 5 3 2 7 7 C 1.54905 * 101.61400 * 35.50282 * 6 5 3 8 8 N 1.47027 * 109.87878 * 176.15268 * 3 2 1 9 9 C 1.34776 * 125.64750 * 298.39078 * 8 3 2 10 10 O 1.21592 * 120.00483 * 355.03514 * 9 8 3 11 11 N 1.34774 * 119.99852 * 175.03010 * 9 8 3 12 12 C 1.46502 * 120.00025 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47387 * 179.97438 * 12 11 9 14 14 C 1.38320 * 119.97388 * 269.72861 * 13 12 11 15 15 C 1.38277 * 120.14140 * 179.76299 * 14 13 12 16 16 C 1.38121 * 120.06997 * 0.51350 * 15 14 13 17 17 C 1.38855 * 119.93059 * 359.73896 * 16 15 14 18 18 O 1.35753 * 120.06988 * 179.97438 * 17 16 15 19 19 C 1.34823 * 116.99722 * 354.60522 * 18 17 16 20 20 H 1.08003 * 120.00454 * 5.09188 * 19 18 17 21 21 C 1.38655 * 119.99606 * 185.09360 * 19 18 17 22 22 N 1.31565 * 119.99875 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47233 * 90.00010 * 23 21 19 25 25 H 1.48502 * 109.47149 * 209.99988 * 23 21 19 26 26 H 1.48500 * 109.47001 * 329.99806 * 23 21 19 27 27 C 1.38083 * 119.96089 * 90.00287 * 13 12 11 28 28 H 1.09001 * 109.47014 * 65.10289 * 1 2 3 29 29 H 1.09003 * 109.46965 * 185.10079 * 1 2 3 30 30 H 1.09000 * 109.47662 * 305.10336 * 1 2 3 31 31 H 1.09003 * 109.47326 * 240.00561 * 2 1 3 32 32 H 1.08995 * 109.46909 * 120.00201 * 2 1 3 33 33 H 1.08998 * 110.75777 * 100.03841 * 5 3 2 34 34 H 1.09001 * 110.72732 * 336.73635 * 5 3 2 35 35 H 1.09000 * 111.00334 * 277.40944 * 6 5 3 36 36 H 1.08995 * 111.00301 * 153.59536 * 6 5 3 37 37 H 1.08999 * 110.37161 * 81.81107 * 7 6 5 38 38 H 1.09007 * 110.36774 * 204.02423 * 7 6 5 39 39 H 0.96998 * 120.00192 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.47673 * 300.00562 * 12 11 9 41 41 H 1.09004 * 109.46931 * 60.00399 * 12 11 9 42 42 H 1.08001 * 119.92444 * 359.97438 * 14 13 12 43 43 H 1.08007 * 119.96617 * 180.25351 * 15 14 13 44 44 H 1.08000 * 120.03239 * 179.72460 * 16 15 14 45 45 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.03708 * 359.95839 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6110 1.9872 0.8412 5 6 1.6587 2.1343 -1.3270 6 6 2.9084 2.9998 -1.6377 7 6 4.0524 2.0935 -1.1185 8 7 3.5072 1.4541 0.0928 9 6 4.2335 0.9613 1.1155 10 8 3.6750 0.5347 2.1078 11 7 5.5789 0.9411 1.0384 12 6 6.3684 0.4049 2.1499 13 6 7.8347 0.4961 1.8145 14 6 8.4632 -0.5550 1.1716 15 6 9.8074 -0.4730 0.8579 16 6 10.5293 0.6552 1.1953 17 6 9.9025 1.7100 1.8454 18 8 10.6093 2.8200 2.1788 19 6 11.9380 2.7906 1.9519 20 1 12.3813 1.9442 1.4483 21 6 12.7354 3.8469 2.3652 22 7 14.0320 3.8180 2.1443 23 14 11.9689 5.3104 3.2370 24 1 11.9629 5.0666 4.7018 25 1 12.7596 6.5322 2.9418 26 1 10.5747 5.4959 2.7604 27 6 8.5508 1.6267 2.1545 28 1 -0.3633 0.4326 -0.9322 29 1 -0.3633 -1.0236 0.0914 30 1 -0.3634 0.5909 0.8407 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.7775 2.7623 -1.1960 34 1 1.4948 1.3972 -2.1131 35 1 2.8772 3.9418 -1.0903 36 1 3.0051 3.1759 -2.7090 37 1 4.3071 1.3397 -1.8635 38 1 4.9287 2.6928 -0.8714 39 1 6.0245 1.2816 0.2470 40 1 6.1649 0.9820 3.0519 41 1 6.0986 -0.6379 2.3173 42 1 7.9021 -1.4403 0.9111 43 1 10.2945 -1.2937 0.3522 44 1 11.5801 0.7168 0.9539 45 1 14.5898 4.5571 2.4332 46 1 8.0604 2.4456 2.6598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647089776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:41 Heat of formation + Delta-G solvation = -36.729066 kcal Electronic energy + Delta-G solvation = -26099.019033 eV Core-core repulsion = 22375.080710 eV Total energy + Delta-G solvation = -3723.938323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.52253 -39.33252 -38.05415 -36.89101 -34.63724 -33.59223 -32.45079 -31.88705 -30.52355 -29.37808 -28.08836 -26.02104 -25.14590 -23.98100 -22.51752 -21.85745 -21.16426 -20.65381 -19.69326 -18.36178 -17.74393 -17.05916 -16.69653 -15.81670 -15.33703 -15.22971 -14.88819 -14.71536 -14.59623 -14.06184 -13.91810 -13.84164 -13.49704 -13.41749 -13.33244 -12.92987 -12.61019 -12.51856 -12.42093 -12.18454 -11.98930 -11.83948 -11.56990 -11.48921 -11.44031 -11.03312 -10.94451 -10.88816 -10.77077 -10.74922 -10.22208 -10.11662 -9.47376 -9.10822 -8.93898 -8.60161 -8.34871 -7.49172 -6.47391 -4.14755 1.76589 2.13998 2.66206 3.18223 3.20068 3.22628 3.36268 3.92994 4.18750 4.23630 4.30519 4.46564 4.53242 4.66355 4.78675 4.94311 5.00130 5.02735 5.11980 5.13550 5.18002 5.29228 5.42596 5.42772 5.44691 5.55907 5.64674 5.67578 5.75198 5.78070 5.81312 5.84542 5.96509 6.00641 6.04837 6.14252 6.27126 6.41878 6.53070 6.67003 6.97119 7.01850 7.11552 7.19549 7.48738 7.72029 7.95522 7.96690 8.60021 8.87532 9.48640 10.60005 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002595 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.176777 B =10789.420295 C =11440.988810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.157 3.843 4 H 0.073 0.927 5 C -0.127 4.127 6 C -0.132 4.132 7 C 0.097 3.903 8 N -0.636 5.636 9 C 0.722 3.278 10 O -0.591 6.591 11 N -0.736 5.736 12 C 0.187 3.813 13 C -0.075 4.075 14 C -0.185 4.185 15 C -0.078 4.078 16 C -0.212 4.212 17 C 0.156 3.844 18 O -0.216 6.216 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.170 4.170 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.398 0.602 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.134 0.866 45 H 0.280 0.720 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.622 -4.449 -8.723 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.092 0.908 5 C -0.165 4.165 6 C -0.170 4.170 7 C -0.027 4.027 8 N -0.375 5.375 9 C 0.424 3.576 10 O -0.469 6.469 11 N -0.391 5.391 12 C 0.063 3.937 13 C -0.075 4.075 14 C -0.204 4.204 15 C -0.096 4.096 16 C -0.232 4.232 17 C 0.104 3.896 18 O -0.121 6.121 19 C -0.466 4.466 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.184 1.184 27 C -0.190 4.190 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.232 0.768 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.152 0.848 45 H 0.090 0.910 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.807 -4.460 -7.762 24.501 hybrid contribution 0.403 0.739 -0.118 0.850 sum -22.404 -3.721 -7.880 24.039 Atomic orbital electron populations 1.21711 0.95246 1.01833 1.01679 1.21914 0.95984 0.96468 1.03100 1.21449 0.79042 0.96362 0.97833 0.90844 1.22757 0.98251 0.99022 0.96491 1.22755 0.94138 0.98343 1.01790 1.22289 0.97435 0.95756 0.87193 1.47657 1.06665 1.63373 1.19813 1.15438 0.81388 0.78715 0.82056 1.90905 1.70762 1.54255 1.30989 1.45295 1.04082 1.67588 1.22112 1.19995 0.85998 0.99209 0.88464 1.19282 0.93669 0.94456 1.00122 1.20557 0.95117 0.98986 1.05778 1.20806 0.93802 0.96898 0.98102 1.21364 1.01647 0.94871 1.05280 1.19059 0.91097 0.86491 0.92971 1.83576 1.21862 1.32591 1.74050 1.20759 0.78156 1.08351 1.39383 0.87592 1.24473 0.94486 0.98452 0.96545 1.69646 1.03530 1.33055 1.45291 0.86180 0.80058 0.80596 0.80067 1.19823 1.20746 1.18380 1.20091 0.92229 0.99146 1.07549 0.92741 0.92622 0.92579 0.92078 0.90454 0.90012 0.90372 0.90463 0.89758 0.91491 0.90654 0.76763 0.91044 0.91031 0.87289 0.86977 0.84832 0.90978 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 37.16 0.36 -0.71 16 2 C -0.14 -1.29 5.39 -26.73 -0.14 -1.44 16 3 C 0.16 1.50 2.89 -66.90 -0.19 1.30 16 4 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.13 -0.80 5.65 -24.84 -0.14 -0.94 16 6 C -0.13 -0.83 7.08 -24.58 -0.17 -1.00 16 7 C 0.10 0.79 6.47 -2.53 -0.02 0.78 16 8 N -0.64 -7.14 3.06 -168.63 -0.52 -7.65 16 9 C 0.72 10.42 8.22 -86.92 -0.71 9.71 16 10 O -0.59 -10.55 15.52 5.28 0.08 -10.47 16 11 N -0.74 -9.85 5.51 -66.41 -0.37 -10.22 16 12 C 0.19 2.70 5.80 -5.20 -0.03 2.67 16 13 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 14 C -0.18 -2.90 9.70 -39.54 -0.38 -3.29 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 16 C -0.21 -4.35 9.17 -39.40 -0.36 -4.71 16 17 C 0.16 3.45 6.65 -39.11 -0.26 3.19 16 18 O -0.22 -5.53 8.59 0.06 0.00 -5.53 16 19 C -0.39 -10.75 9.95 30.89 0.31 -10.44 16 20 H 0.11 2.96 5.44 -52.48 -0.29 2.68 16 21 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 22 N -0.88 -24.91 13.96 55.48 0.77 -24.14 16 23 Si 0.91 21.34 28.62 -169.99 -4.86 16.48 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.17 -3.22 9.65 -39.39 -0.38 -3.60 16 28 H 0.05 0.32 7.60 -51.93 -0.39 -0.08 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 32 H 0.08 0.97 6.91 -51.93 -0.36 0.61 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.44 7.79 -51.93 -0.40 0.03 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.62 7.50 -51.93 -0.39 0.23 16 39 H 0.40 4.79 7.06 -40.82 -0.29 4.50 16 40 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 41 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 45 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 375.26 15.07 5.66 5.66 Total: -1.00 -31.01 375.26 -9.45 -40.46 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.04 Total: 5.69 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.17 Total: -10.28 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.11 Total: -42.01 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.08 Total: -15.99 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.01 -9.45 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647089776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.729 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds