Wall clock time and date at job start Tue Mar 31 2020 13:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46720 * 2 1 4 4 H 1.09005 * 109.87251 * 55.14315 * 3 2 1 5 5 C 1.54422 * 109.88057 * 293.96860 * 3 2 1 6 6 C 1.55162 * 102.89454 * 218.39305 * 5 3 2 7 7 C 1.54905 * 101.61400 * 35.50282 * 6 5 3 8 8 N 1.47027 * 109.87878 * 176.15268 * 3 2 1 9 9 C 1.34776 * 125.64750 * 298.39078 * 8 3 2 10 10 O 1.21592 * 120.00483 * 355.03514 * 9 8 3 11 11 N 1.34774 * 119.99852 * 175.03010 * 9 8 3 12 12 C 1.46502 * 120.00025 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47387 * 179.97438 * 12 11 9 14 14 C 1.38320 * 119.97388 * 269.72861 * 13 12 11 15 15 C 1.38277 * 120.14140 * 179.76299 * 14 13 12 16 16 C 1.38121 * 120.06997 * 0.51350 * 15 14 13 17 17 C 1.38855 * 119.93059 * 359.73896 * 16 15 14 18 18 O 1.35753 * 120.06988 * 179.97438 * 17 16 15 19 19 C 1.34823 * 116.99722 * 354.60522 * 18 17 16 20 20 H 1.08003 * 120.00454 * 5.09188 * 19 18 17 21 21 C 1.38655 * 119.99606 * 185.09360 * 19 18 17 22 22 N 1.31565 * 119.99875 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47233 * 90.00010 * 23 21 19 25 25 H 1.48502 * 109.47149 * 209.99988 * 23 21 19 26 26 H 1.48500 * 109.47001 * 329.99806 * 23 21 19 27 27 C 1.38083 * 119.96089 * 90.00287 * 13 12 11 28 28 H 1.09001 * 109.47014 * 65.10289 * 1 2 3 29 29 H 1.09003 * 109.46965 * 185.10079 * 1 2 3 30 30 H 1.09000 * 109.47662 * 305.10336 * 1 2 3 31 31 H 1.09003 * 109.47326 * 240.00561 * 2 1 3 32 32 H 1.08995 * 109.46909 * 120.00201 * 2 1 3 33 33 H 1.08998 * 110.75777 * 100.03841 * 5 3 2 34 34 H 1.09001 * 110.72732 * 336.73635 * 5 3 2 35 35 H 1.09000 * 111.00334 * 277.40944 * 6 5 3 36 36 H 1.08995 * 111.00301 * 153.59536 * 6 5 3 37 37 H 1.08999 * 110.37161 * 81.81107 * 7 6 5 38 38 H 1.09007 * 110.36774 * 204.02423 * 7 6 5 39 39 H 0.96998 * 120.00192 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.47673 * 300.00562 * 12 11 9 41 41 H 1.09004 * 109.46931 * 60.00399 * 12 11 9 42 42 H 1.08001 * 119.92444 * 359.97438 * 14 13 12 43 43 H 1.08007 * 119.96617 * 180.25351 * 15 14 13 44 44 H 1.08000 * 120.03239 * 179.72460 * 16 15 14 45 45 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.03708 * 359.95839 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6110 1.9872 0.8412 5 6 1.6587 2.1343 -1.3270 6 6 2.9084 2.9998 -1.6377 7 6 4.0524 2.0935 -1.1185 8 7 3.5072 1.4541 0.0928 9 6 4.2335 0.9613 1.1155 10 8 3.6750 0.5347 2.1078 11 7 5.5789 0.9411 1.0384 12 6 6.3684 0.4049 2.1499 13 6 7.8347 0.4961 1.8145 14 6 8.4632 -0.5550 1.1716 15 6 9.8074 -0.4730 0.8579 16 6 10.5293 0.6552 1.1953 17 6 9.9025 1.7100 1.8454 18 8 10.6093 2.8200 2.1788 19 6 11.9380 2.7906 1.9519 20 1 12.3813 1.9442 1.4483 21 6 12.7354 3.8469 2.3652 22 7 14.0320 3.8180 2.1443 23 14 11.9689 5.3104 3.2370 24 1 11.9629 5.0666 4.7018 25 1 12.7596 6.5322 2.9418 26 1 10.5747 5.4959 2.7604 27 6 8.5508 1.6267 2.1545 28 1 -0.3633 0.4326 -0.9322 29 1 -0.3633 -1.0236 0.0914 30 1 -0.3634 0.5909 0.8407 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.7775 2.7623 -1.1960 34 1 1.4948 1.3972 -2.1131 35 1 2.8772 3.9418 -1.0903 36 1 3.0051 3.1759 -2.7090 37 1 4.3071 1.3397 -1.8635 38 1 4.9287 2.6928 -0.8714 39 1 6.0245 1.2816 0.2470 40 1 6.1649 0.9820 3.0519 41 1 6.0986 -0.6379 2.3173 42 1 7.9021 -1.4403 0.9111 43 1 10.2945 -1.2937 0.3522 44 1 11.5801 0.7168 0.9539 45 1 14.5898 4.5571 2.4332 46 1 8.0604 2.4456 2.6598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647089776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:41 Heat of formation + Delta-G solvation = -55.049565 kcal Electronic energy + Delta-G solvation = -26099.813469 eV Core-core repulsion = 22375.080710 eV Total energy + Delta-G solvation = -3724.732759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50960 -40.91103 -39.11307 -38.38161 -35.84819 -34.49278 -34.35039 -32.79306 -31.77112 -30.92435 -28.74057 -27.49301 -26.83582 -24.80287 -23.37813 -23.19764 -22.37072 -21.73450 -20.70317 -19.73490 -19.32184 -18.59117 -17.56693 -16.98061 -16.82938 -16.60745 -15.99800 -15.89665 -15.67095 -15.59867 -15.40704 -14.93009 -14.64410 -14.45399 -14.25068 -14.20346 -13.95938 -13.81399 -13.64495 -13.18762 -13.12873 -12.98479 -12.60019 -12.53852 -12.48254 -12.38266 -12.12401 -12.07498 -11.95371 -11.58268 -11.48496 -11.33469 -11.24401 -10.92528 -10.25421 -9.82563 -9.49758 -9.14270 -8.50946 -6.23651 0.31065 0.62862 1.30900 1.34261 1.50579 1.66802 2.10036 2.26629 2.71365 2.95830 3.01146 3.21409 3.63787 3.68307 3.75619 3.93335 4.04608 4.18038 4.25685 4.26838 4.37685 4.39822 4.48003 4.52557 4.57435 4.62448 4.67790 4.70225 4.82414 4.91127 4.97539 5.03284 5.11078 5.16647 5.16826 5.24208 5.28157 5.35364 5.39185 5.42060 5.51782 5.61575 5.67296 5.73715 5.87694 6.04781 6.17629 6.83529 6.94317 7.51831 7.57245 8.60376 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002595 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.176777 B =10789.420295 C =11440.988810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.148 3.852 4 H 0.055 0.945 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.088 3.912 8 N -0.636 5.636 9 C 0.716 3.284 10 O -0.631 6.631 11 N -0.730 5.730 12 C 0.194 3.806 13 C -0.060 4.060 14 C -0.158 4.158 15 C -0.072 4.072 16 C -0.226 4.226 17 C 0.120 3.880 18 O -0.245 6.245 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.267 1.267 26 H -0.263 1.263 27 C -0.169 4.169 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.406 0.594 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.112 0.888 45 H 0.285 0.715 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.556 -5.098 -10.372 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.045 3.955 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.164 4.164 7 C -0.034 4.034 8 N -0.373 5.373 9 C 0.418 3.582 10 O -0.513 6.513 11 N -0.386 5.386 12 C 0.070 3.930 13 C -0.061 4.061 14 C -0.177 4.177 15 C -0.090 4.090 16 C -0.246 4.246 17 C 0.071 3.929 18 O -0.152 6.152 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.192 1.192 26 H -0.188 1.188 27 C -0.189 4.189 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.242 0.758 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.130 0.870 45 H 0.094 0.906 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.774 -5.122 -9.463 27.930 hybrid contribution 1.082 0.664 0.304 1.305 sum -24.693 -4.458 -9.159 26.711 Atomic orbital electron populations 1.21683 0.93469 1.02170 1.02656 1.21838 0.97522 0.96088 1.01473 1.21659 0.78042 0.96563 0.99268 0.92645 1.22754 0.98817 0.99228 0.94637 1.22770 0.92960 0.97551 1.03096 1.22551 0.98213 0.96396 0.86217 1.47774 1.07454 1.62321 1.19781 1.15606 0.81539 0.78751 0.82318 1.90876 1.71489 1.56093 1.32835 1.45119 1.03859 1.67547 1.22032 1.19866 0.84706 0.99805 0.88607 1.19438 0.94396 0.93424 0.98849 1.21018 0.94542 0.99486 1.02620 1.21140 0.94277 0.96286 0.97330 1.21406 1.01104 0.96116 1.05967 1.19547 0.92193 0.86621 0.94498 1.83523 1.20751 1.34582 1.76383 1.20707 0.79438 1.07959 1.39320 0.89807 1.25243 0.94921 1.01074 0.97503 1.69725 1.04673 1.34359 1.47438 0.85256 0.78954 0.77823 0.78930 1.19343 1.19195 1.18762 1.20254 0.91036 1.00294 1.07274 0.90529 0.92395 0.93047 0.91487 0.94164 0.88365 0.88895 0.90871 0.87338 0.90088 0.90861 0.75837 0.91782 0.90000 0.83487 0.83696 0.87035 0.90578 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.67 71.98 0.70 -1.11 16 2 C -0.13 -2.33 5.39 30.59 0.16 -2.17 16 3 C 0.15 2.60 2.89 45.37 0.13 2.73 16 4 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 5 C -0.12 -1.08 5.65 31.82 0.18 -0.90 16 6 C -0.13 -1.16 7.08 31.99 0.23 -0.94 16 7 C 0.09 1.23 6.47 86.85 0.56 1.79 16 8 N -0.64 -13.33 3.06 -805.68 -2.47 -15.80 16 9 C 0.72 19.97 8.22 179.06 1.47 21.44 16 10 O -0.63 -22.53 15.52 -4.01 -0.06 -22.59 16 11 N -0.73 -18.19 5.51 -482.30 -2.66 -20.84 16 12 C 0.19 5.19 5.80 85.63 0.50 5.68 16 13 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 14 C -0.16 -4.35 9.70 22.30 0.22 -4.13 16 15 C -0.07 -2.28 10.04 22.25 0.22 -2.06 16 16 C -0.23 -9.38 9.17 22.39 0.21 -9.18 16 17 C 0.12 5.41 6.65 22.58 0.15 5.56 16 18 O -0.24 -13.00 8.59 -22.70 -0.19 -13.20 16 19 C -0.40 -22.96 9.95 67.92 0.68 -22.29 16 20 H 0.08 5.03 5.44 -2.91 -0.02 5.01 16 21 C 0.01 0.64 5.49 84.83 0.47 1.11 16 22 N -0.92 -54.33 13.96 21.61 0.30 -54.03 16 23 Si 0.97 45.10 28.62 68.60 1.96 47.06 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 27 C -0.17 -6.26 9.65 22.39 0.22 -6.05 16 28 H 0.08 0.64 7.60 -2.39 -0.02 0.63 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.09 8.05 -2.39 -0.02 1.07 16 32 H 0.04 1.02 6.91 -2.39 -0.02 1.00 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.64 7.79 -2.39 -0.02 0.62 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.05 7.50 -2.38 -0.02 1.04 16 39 H 0.41 8.82 7.06 -92.71 -0.65 8.17 16 40 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 41 H 0.08 2.09 8.08 -2.38 -0.02 2.07 16 42 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 45 H 0.28 15.42 8.31 -92.71 -0.77 14.64 16 46 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -71.37 375.26 3.19 -68.18 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.33 Total: 23.62 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 5.98 Total: -12.40 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -4.82 Total: -90.67 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.26 Total: -35.79 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.96 Total: 47.06 kcal Total: -71.37 3.19 -68.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647089776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.132 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds