Wall clock time and date at job start Tue Mar 31 2020 12:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 C 1.53004 * 109.46406 * 239.99702 * 2 1 3 5 5 N 1.46894 * 109.47246 * 120.00275 * 2 1 3 6 6 C 1.48191 * 111.07320 * 315.85832 * 5 2 1 7 7 C 1.53936 * 86.22420 * 137.46501 * 6 5 2 8 8 C 1.47969 * 111.00244 * 55.14376 * 5 2 1 9 9 H 1.08992 * 113.75903 * 336.84973 * 8 5 2 10 10 C 1.50702 * 113.75825 * 108.09867 * 8 5 2 11 11 O 1.21294 * 119.99727 * 358.02510 * 10 8 5 12 12 N 1.34773 * 119.99977 * 178.02163 * 10 8 5 13 13 C 1.39991 * 119.99723 * 185.67363 * 12 10 8 14 14 C 1.38924 * 120.00070 * 214.85144 * 13 12 10 15 15 C 1.38003 * 120.00087 * 180.23191 * 14 13 12 16 16 C 1.38908 * 119.99768 * 359.46770 * 15 14 13 17 17 O 1.35774 * 119.99740 * 180.27428 * 16 15 14 18 18 C 1.34820 * 116.99899 * 354.53742 * 17 16 15 19 19 H 1.07997 * 119.99795 * 5.04680 * 18 17 16 20 20 C 1.38634 * 120.00098 * 185.04841 * 18 17 16 21 21 N 1.31576 * 119.99847 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00139 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47861 * 89.99725 * 22 20 18 24 24 H 1.48504 * 109.47003 * 210.00137 * 22 20 18 25 25 H 1.48500 * 109.47105 * 329.99270 * 22 20 18 26 26 C 1.38911 * 120.00340 * 0.30576 * 16 15 14 27 27 C 1.37994 * 120.00294 * 359.94846 * 26 16 15 28 28 H 1.09007 * 109.46873 * 306.09323 * 1 2 3 29 29 H 1.09002 * 109.47718 * 66.08961 * 1 2 3 30 30 H 1.09003 * 109.47737 * 186.09806 * 1 2 3 31 31 H 1.09001 * 109.46856 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46984 * 299.99690 * 3 2 1 33 33 H 1.08990 * 109.47243 * 60.00282 * 3 2 1 34 34 H 1.08997 * 109.47673 * 300.00286 * 4 2 1 35 35 H 1.09001 * 109.46894 * 60.00734 * 4 2 1 36 36 H 1.08999 * 109.46557 * 179.97438 * 4 2 1 37 37 H 1.08995 * 113.66055 * 23.13822 * 6 5 2 38 38 H 1.09003 * 113.92125 * 251.81627 * 6 5 2 39 39 H 1.09007 * 113.72991 * 222.01415 * 7 6 5 40 40 H 1.08992 * 113.73663 * 90.73098 * 7 6 5 41 41 H 0.96997 * 120.00039 * 5.67339 * 12 10 8 42 42 H 1.08005 * 119.99662 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.99856 * 179.74592 * 15 14 13 44 44 H 0.97001 * 120.00140 * 180.02562 * 21 20 18 45 45 H 1.07995 * 119.99468 * 179.97438 * 26 16 15 46 46 H 1.08003 * 120.00190 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0398 -0.7214 -1.2493 5 7 2.0197 -0.6925 1.1993 6 6 1.2617 -0.2751 2.4024 7 6 1.2592 -1.7642 2.7925 8 6 1.4521 -2.0558 1.2934 9 1 0.5177 -2.1811 0.7466 10 6 2.4497 -3.1496 1.0111 11 8 3.5883 -2.8671 0.7028 12 7 2.0766 -4.4415 1.1012 13 6 3.0294 -5.4568 0.9560 14 6 2.6813 -6.6534 0.3420 15 6 3.6192 -7.6562 0.2031 16 6 4.9143 -7.4648 0.6674 17 8 5.8386 -8.4493 0.5258 18 6 5.4077 -9.6267 0.0301 19 1 4.3878 -9.7284 -0.3102 20 6 6.2738 -10.7068 -0.0427 21 7 7.5165 -10.5826 0.3715 22 14 5.6770 -12.3378 -0.7301 23 1 5.9080 -12.3714 -2.1966 24 1 6.4225 -13.4490 -0.0860 25 1 4.2258 -12.4901 -0.4541 26 6 5.2638 -6.2666 1.2772 27 6 4.3246 -5.2658 1.4207 28 1 -0.3633 0.6054 0.8305 29 1 -0.3634 0.4165 -0.9395 30 1 -0.3635 -1.0218 0.1092 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6768 1.9562 0.8899 34 1 1.6765 -1.7490 -1.2493 35 1 1.6765 -0.2075 -2.1392 36 1 3.1298 -0.7210 -1.2495 37 1 0.2715 0.1222 2.1795 38 1 1.8296 0.3567 3.0854 39 1 0.3049 -2.1125 3.1878 40 1 2.1085 -2.0576 3.4094 41 1 1.1480 -4.6678 1.2666 42 1 1.6755 -6.8004 -0.0230 43 1 3.3474 -8.5879 -0.2705 44 1 8.1226 -11.3382 0.3202 45 1 6.2706 -6.1182 1.6385 46 1 4.5963 -4.3341 1.8945 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650008763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:06 Heat of formation + Delta-G solvation = 13.860822 kcal Electronic energy + Delta-G solvation = -26550.952016 eV Core-core repulsion = 22829.207435 eV Total energy + Delta-G solvation = -3721.744581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37001 -39.54484 -38.38250 -36.35710 -35.13587 -33.85161 -32.16244 -30.19681 -28.94334 -27.91845 -27.74976 -27.35493 -26.18478 -25.21646 -22.36716 -21.99261 -20.95142 -20.07022 -18.95897 -18.02338 -17.51205 -17.20296 -16.65865 -16.17672 -15.24790 -15.04073 -14.58649 -14.54473 -14.33578 -14.15858 -13.96214 -13.54334 -13.47411 -13.22008 -12.83101 -12.73019 -12.60106 -12.46128 -12.22286 -12.03017 -11.83333 -11.68165 -11.55579 -11.52759 -11.42750 -11.33669 -11.01577 -10.85738 -10.82187 -10.70979 -10.44444 -9.67082 -9.49837 -9.25149 -8.85110 -8.68566 -8.18192 -6.89209 -6.42489 -4.00610 2.12506 2.22532 2.84414 3.10802 3.14425 3.17609 3.19512 3.77903 3.98423 4.14181 4.40110 4.43488 4.58764 4.64386 4.66982 4.83408 4.87017 5.01390 5.12319 5.19886 5.27972 5.33834 5.34648 5.44353 5.49427 5.56729 5.58455 5.60142 5.69163 5.74493 5.79834 5.84138 5.91102 6.11625 6.17390 6.23711 6.26142 6.32798 6.79445 6.82133 6.88920 7.03236 7.19083 7.24989 7.43802 7.77718 7.81862 8.02004 8.48447 9.02794 9.73803 10.75563 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032102 B = 0.002366 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.001173 B =11833.005739 C =11860.897052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.067 3.933 3 C -0.131 4.131 4 C -0.136 4.136 5 N -0.436 5.436 6 C -0.009 4.009 7 C -0.129 4.129 8 C 0.004 3.996 9 H 0.104 0.896 10 C 0.518 3.482 11 O -0.501 6.501 12 N -0.664 5.664 13 C 0.041 3.959 14 C -0.091 4.091 15 C -0.220 4.220 16 C 0.147 3.853 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.177 4.177 27 C -0.066 4.066 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.399 0.601 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.270 0.730 45 H 0.120 0.880 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 19.207 2.158 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.023 4.023 3 C -0.189 4.189 4 C -0.193 4.193 5 N -0.159 5.159 6 C -0.137 4.137 7 C -0.167 4.167 8 C -0.109 4.109 9 H 0.122 0.878 10 C 0.303 3.697 11 O -0.374 6.374 12 N -0.309 5.309 13 C -0.052 4.052 14 C -0.112 4.112 15 C -0.239 4.239 16 C 0.093 3.907 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.197 4.197 27 C -0.086 4.086 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.233 0.767 42 H 0.127 0.873 43 H 0.148 0.852 44 H 0.080 0.920 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.924 19.409 1.955 25.181 hybrid contribution -1.792 -1.050 -0.491 2.135 sum -17.716 18.359 1.464 25.555 Atomic orbital electron populations 1.22625 0.96846 1.02150 1.02780 1.21554 0.92602 0.95727 0.92434 1.21720 1.02240 0.93626 1.01327 1.21790 1.02852 0.99477 0.95214 1.68743 1.45700 0.99911 1.01589 1.24119 0.98728 0.97034 0.93836 1.23280 1.03364 0.96046 0.94035 1.23538 0.96887 0.91902 0.98533 0.87834 1.20106 0.89228 0.82700 0.77670 1.90731 1.20066 1.82394 1.44209 1.43215 1.10994 1.04729 1.72004 1.17220 0.90521 0.89590 1.07830 1.20472 0.98863 0.93065 0.98759 1.20967 0.93634 1.00761 1.08578 1.19400 0.88646 0.89752 0.92923 1.83991 1.32377 1.19652 1.72044 1.21309 0.98437 0.85732 1.41280 0.89104 1.25286 0.95156 0.99004 0.97136 1.70050 1.04324 1.31862 1.43501 0.85715 0.78769 0.80042 0.78905 1.19913 1.20278 1.19237 1.20127 1.00227 0.92706 1.06616 1.20575 0.91720 0.98023 0.98315 0.91665 0.91602 0.92101 0.91566 0.92301 0.92816 0.93084 0.92413 0.91087 0.89941 0.89000 0.90160 0.88533 0.76711 0.87256 0.85162 0.92037 0.86152 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 7.46 37.16 0.28 -0.97 16 2 C 0.07 0.61 0.72 -131.60 -0.09 0.51 16 3 C -0.13 -1.08 8.60 37.16 0.32 -0.76 16 4 C -0.14 -1.46 8.38 37.16 0.31 -1.15 16 5 N -0.44 -4.61 5.44 -215.45 -1.17 -5.78 16 6 C -0.01 -0.07 7.17 -2.64 -0.02 -0.09 16 7 C -0.13 -1.04 7.84 -25.79 -0.20 -1.24 16 8 C 0.00 0.04 2.49 -67.80 -0.17 -0.13 16 9 H 0.10 0.83 5.48 -51.93 -0.28 0.55 16 10 C 0.52 7.41 6.70 -10.99 -0.07 7.33 16 11 O -0.50 -9.42 14.47 5.55 0.08 -9.34 16 12 N -0.66 -9.09 5.34 -9.82 -0.05 -9.14 16 13 C 0.04 0.73 6.26 -83.62 -0.52 0.21 16 14 C -0.09 -1.66 9.96 -39.41 -0.39 -2.05 16 15 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 16 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 17 O -0.18 -5.12 9.76 0.00 0.00 -5.12 16 18 C -0.39 -10.97 9.48 30.88 0.29 -10.68 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 22 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.18 -3.97 9.98 -39.42 -0.39 -4.36 16 27 C -0.07 -1.33 8.64 -39.42 -0.34 -1.67 16 28 H 0.06 0.37 6.04 -51.93 -0.31 0.06 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 5.65 -51.93 -0.29 0.10 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.39 7.74 -51.93 -0.40 -0.01 16 34 H 0.05 0.59 7.02 -51.93 -0.36 0.23 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.48 5.12 -51.93 -0.27 0.22 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.40 3.95 8.82 -40.82 -0.36 3.59 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 46 H 0.12 2.42 6.52 -52.48 -0.34 2.08 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -33.64 367.26 -8.15 -41.80 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.55 Total: 7.14 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.72 Total: -15.85 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.47 Total: -39.68 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.64 -8.15 -41.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650008763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.658 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds