Wall clock time and date at job start Tue Mar 31 2020 12:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.56199 * 29.30581 * 4 3 2 6 6 C 1.52997 * 117.50425 * 243.60994 * 4 3 2 7 7 C 1.53004 * 60.03449 * 252.50168 * 6 4 3 8 8 H 1.08998 * 117.49749 * 107.50075 * 7 6 4 9 9 N 1.46499 * 117.49553 * 252.52200 * 7 6 4 10 10 C 1.34776 * 119.99800 * 223.60557 * 9 7 6 11 11 O 1.21588 * 119.99961 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00179 * 179.97438 * 10 9 7 13 13 C 1.46498 * 120.00292 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47374 * 180.02562 * 13 12 10 15 15 C 1.38321 * 119.96566 * 269.72622 * 14 13 12 16 16 C 1.38280 * 120.14128 * 179.76734 * 15 14 13 17 17 C 1.38123 * 120.06564 * 0.50450 * 16 15 14 18 18 C 1.38858 * 119.93172 * 359.74730 * 17 16 15 19 19 O 1.35750 * 120.06884 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00164 * 354.49013 * 19 18 17 21 21 H 1.07998 * 119.99479 * 5.05625 * 20 19 18 22 22 C 1.38648 * 119.99742 * 185.05544 * 20 19 18 23 23 N 1.31555 * 120.00357 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99568 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47326 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46857 * 120.00398 * 24 22 20 27 27 H 1.48500 * 109.47242 * 240.00087 * 24 22 20 28 28 C 1.38075 * 119.96643 * 89.99620 * 14 13 12 29 29 H 1.09001 * 109.47546 * 59.99496 * 1 2 3 30 30 H 1.08999 * 109.47697 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47576 * 299.99613 * 1 2 3 32 32 H 1.09005 * 109.47288 * 239.99934 * 2 1 3 33 33 H 1.09001 * 109.47546 * 120.00504 * 2 1 3 34 34 H 1.09007 * 109.46977 * 60.00321 * 3 2 1 35 35 H 1.08992 * 109.47412 * 300.00515 * 3 2 1 36 36 H 1.09007 * 117.49521 * 0.02562 * 6 4 3 37 37 H 1.08995 * 117.50146 * 144.99920 * 6 4 3 38 38 H 0.97003 * 120.00437 * 43.60575 * 9 7 6 39 39 H 0.97003 * 120.00057 * 0.02562 * 12 10 9 40 40 H 1.09000 * 109.46750 * 300.00450 * 13 12 10 41 41 H 1.08999 * 109.47227 * 59.99811 * 13 12 10 42 42 H 1.08001 * 119.93243 * 359.97438 * 15 14 13 43 43 H 1.08001 * 119.96963 * 180.25849 * 16 15 14 44 44 H 1.07998 * 120.03495 * 179.72334 * 17 16 15 45 45 H 0.96999 * 119.99733 * 179.97438 * 23 22 20 46 46 H 1.08002 * 120.03863 * 0.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0404 0.5849 -0.4803 6 6 4.2760 2.0458 1.2165 7 6 4.2771 2.7949 -0.1176 8 1 3.6524 3.6847 -0.1957 9 7 5.5344 2.8374 -0.8684 10 6 5.9407 3.9894 -1.4378 11 8 5.2640 4.9936 -1.3279 12 7 7.0976 4.0286 -2.1281 13 6 7.5395 5.2810 -2.7465 14 6 8.8516 5.0568 -3.4531 15 6 10.0424 5.2468 -2.7756 16 6 11.2484 5.0374 -3.4190 17 6 11.2673 4.6477 -4.7440 18 6 10.0736 4.4611 -5.4284 19 8 10.0889 4.0787 -6.7308 20 6 11.2927 4.0075 -7.3338 21 1 12.1939 4.1697 -6.7611 22 6 11.3737 3.7260 -8.6889 23 7 10.2759 3.5288 -9.3866 24 14 13.0416 3.6280 -9.5245 25 1 14.1108 3.8873 -8.5272 26 1 13.2253 2.2739 -10.1057 27 1 13.1146 4.6444 -10.6047 28 6 8.8638 4.6672 -4.7777 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 3.6504 2.4424 2.0162 37 1 5.2107 1.5850 1.5357 38 1 6.0745 2.0363 -0.9558 39 1 7.6377 3.2276 -2.2154 40 1 6.7919 5.6143 -3.4662 41 1 7.6667 6.0416 -1.9761 42 1 10.0304 5.5561 -1.7409 43 1 12.1765 5.1826 -2.8861 44 1 12.2095 4.4887 -5.2473 45 1 10.3326 3.3322 -10.3348 46 1 7.9337 4.5236 -5.3076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650328580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:07 Heat of formation + Delta-G solvation = -25.111802 kcal Electronic energy + Delta-G solvation = -24838.373668 eV Core-core repulsion = 21114.939108 eV Total energy + Delta-G solvation = -3723.434560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.14317 -39.14222 -38.17420 -36.79831 -34.76647 -34.41429 -32.71925 -32.33207 -30.55666 -29.12244 -27.54966 -25.93421 -25.08693 -22.54569 -22.05496 -21.70370 -21.04170 -20.82383 -20.66181 -18.60891 -17.61902 -17.07482 -16.65067 -15.56628 -15.51578 -15.11289 -15.03017 -14.81137 -14.55801 -14.42683 -14.05654 -13.64998 -13.62099 -13.49069 -13.20774 -12.85204 -12.61710 -12.40672 -12.32438 -12.22838 -11.74927 -11.66892 -11.42422 -11.39649 -11.14612 -11.08299 -10.96592 -10.82339 -10.70542 -10.47642 -10.32927 -10.18271 -9.42152 -9.12287 -8.91163 -8.64915 -8.26683 -7.34391 -6.50660 -4.10195 1.84375 2.25032 2.73737 3.08481 3.08888 3.10220 3.15667 3.67946 3.91169 4.12979 4.37040 4.51454 4.55170 4.65817 4.75939 4.81908 4.92254 4.96714 5.05626 5.18684 5.27116 5.40404 5.46159 5.49772 5.52250 5.54659 5.66425 5.70216 5.76219 5.84311 5.86856 5.91324 5.93946 6.03242 6.06339 6.24018 6.40030 6.53242 6.54779 6.80523 6.89880 6.99483 7.18099 7.26242 7.34430 7.69496 7.93548 8.00511 8.59995 8.94819 9.63486 10.67162 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.002017 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.896608 B =13881.457767 C =15044.158663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.161 4.161 5 H 0.106 0.894 6 C -0.192 4.192 7 C 0.108 3.892 8 H 0.138 0.862 9 N -0.720 5.720 10 C 0.707 3.293 11 O -0.593 6.593 12 N -0.735 5.735 13 C 0.187 3.813 14 C -0.073 4.073 15 C -0.194 4.194 16 C -0.077 4.077 17 C -0.225 4.225 18 C 0.150 3.850 19 O -0.177 6.177 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.170 4.170 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.397 0.603 39 H 0.399 0.601 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.128 0.872 45 H 0.270 0.730 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.614 -5.507 18.673 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.126 4.126 4 C -0.181 4.181 5 H 0.124 0.876 6 C -0.231 4.231 7 C 0.001 3.999 8 H 0.155 0.845 9 N -0.373 5.373 10 C 0.407 3.593 11 O -0.472 6.472 12 N -0.390 5.390 13 C 0.064 3.936 14 C -0.074 4.074 15 C -0.214 4.214 16 C -0.095 4.095 17 C -0.245 4.245 18 C 0.096 3.904 19 O -0.080 6.080 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.189 4.189 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.231 0.769 39 H 0.233 0.767 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.080 0.920 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.463 -4.643 18.326 22.109 hybrid contribution 1.576 -0.916 -0.517 1.895 sum -9.887 -5.560 17.809 21.115 Atomic orbital electron populations 1.21783 0.95885 1.01608 1.01873 1.21502 0.95727 0.96593 1.02090 1.21202 0.91861 0.97197 1.02379 1.22930 0.95445 0.97401 1.02334 0.87576 1.23653 1.02665 1.04408 0.92388 1.21518 0.87200 0.96880 0.94297 0.84467 1.44476 1.24179 1.11449 1.57227 1.15878 0.81495 0.83429 0.78477 1.90907 1.56494 1.33687 1.66086 1.45254 1.22790 1.14187 1.56751 1.20007 0.92879 0.84761 0.95992 1.19277 0.93579 1.01156 0.93388 1.20488 0.91931 1.09543 0.99388 1.20749 0.97018 0.97604 0.94121 1.21246 0.98606 1.09230 0.95419 1.19331 0.93106 0.91956 0.86024 1.83983 1.32754 1.73258 1.17998 1.21373 0.82799 1.50388 0.92352 0.88976 1.25302 0.99387 0.96496 0.95333 1.70045 1.27345 1.43843 1.08295 0.85640 0.80072 0.78319 0.79350 1.19087 1.20131 1.20084 1.20099 0.96340 1.08265 0.94240 0.92655 0.92799 0.92779 0.91951 0.91968 0.91600 0.91301 0.88090 0.88660 0.76889 0.76713 0.90963 0.91057 0.87481 0.87289 0.85464 0.91993 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.12 -0.75 5.89 -26.74 -0.16 -0.91 16 3 C -0.09 -0.61 5.50 -26.73 -0.15 -0.75 16 4 C -0.16 -1.20 5.66 -90.58 -0.51 -1.71 16 5 H 0.11 0.75 8.07 -51.93 -0.42 0.33 16 6 C -0.19 -1.42 10.10 -26.73 -0.27 -1.69 16 7 C 0.11 1.04 6.16 -67.89 -0.42 0.63 16 8 H 0.14 1.56 7.40 -51.93 -0.38 1.17 16 9 N -0.72 -7.58 5.57 -58.63 -0.33 -7.91 16 10 C 0.71 9.99 8.57 -86.92 -0.74 9.24 16 11 O -0.59 -10.63 15.91 5.29 0.08 -10.54 16 12 N -0.74 -9.73 5.55 -66.42 -0.37 -10.10 16 13 C 0.19 2.78 5.80 -5.20 -0.03 2.75 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 15 C -0.19 -3.14 9.70 -39.54 -0.38 -3.53 16 16 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 17 C -0.23 -4.68 9.17 -39.39 -0.36 -5.04 16 18 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 19 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 20 C -0.39 -10.72 9.49 30.88 0.29 -10.43 16 21 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.86 13.67 55.48 0.76 -24.10 16 24 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 28 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.42 7.87 -51.92 -0.41 0.01 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.67 8.03 -51.92 -0.42 0.25 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.18 8.84 -40.82 -0.36 2.82 16 39 H 0.40 4.60 8.48 -40.82 -0.35 4.26 16 40 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 41 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 45 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -31.86 389.53 -10.16 -42.02 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.11 Total: 9.64 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -4.05 Total: -15.07 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.06 Total: -42.10 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.08 Total: -15.45 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.86 -10.16 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650328580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.903 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds