Wall clock time and date at job start Tue Mar 31 2020 12:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47077 * 2 1 4 4 C 1.53004 * 109.47325 * 120.00096 * 2 1 3 5 5 H 1.09000 * 109.46946 * 185.00243 * 4 2 1 6 6 C 1.53006 * 109.46732 * 305.00025 * 4 2 1 7 7 N 1.46504 * 109.46717 * 174.99935 * 6 4 2 8 8 C 1.34770 * 119.99407 * 180.02562 * 7 6 4 9 9 O 1.21279 * 120.00888 * 359.97438 * 8 7 6 10 10 C 1.50708 * 119.99541 * 179.97438 * 8 7 6 11 11 H 1.09003 * 110.80795 * 58.31458 * 10 8 7 12 12 C 1.54699 * 110.74923 * 294.99352 * 10 8 7 13 13 C 1.51648 * 101.92862 * 216.39415 * 12 10 8 14 14 C 1.37740 * 132.16903 * 195.54117 * 13 12 10 15 15 C 1.38355 * 119.97356 * 179.53004 * 14 13 12 16 16 C 1.38285 * 119.76631 * 0.02562 * 15 14 13 17 17 C 1.37933 * 120.35266 * 0.13980 * 16 15 14 18 18 C 1.38877 * 107.04005 * 15.36796 * 13 12 10 19 19 O 1.36139 * 111.23460 * 1.10283 * 18 13 12 20 20 N 1.46501 * 109.46946 * 64.99753 * 4 2 1 21 21 C 1.36940 * 119.99594 * 85.00561 * 20 4 2 22 22 H 1.07998 * 120.00026 * 359.97438 * 21 20 4 23 23 C 1.38807 * 119.99608 * 180.02562 * 21 20 4 24 24 N 1.31619 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99811 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47339 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47262 * 119.99843 * 25 23 21 28 28 H 1.48501 * 109.46865 * 239.99891 * 25 23 21 29 29 H 1.08995 * 109.47373 * 300.00028 * 1 2 3 30 30 H 1.09006 * 109.46795 * 60.00216 * 1 2 3 31 31 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47391 * 240.00436 * 2 1 3 33 33 H 1.08997 * 109.47005 * 299.99841 * 3 2 1 34 34 H 1.08993 * 109.47201 * 60.00283 * 3 2 1 35 35 H 1.09005 * 109.46652 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.46923 * 54.99805 * 6 4 2 37 37 H 1.09002 * 109.47060 * 294.99826 * 6 4 2 38 38 H 0.96994 * 120.00094 * 359.97438 * 7 6 4 39 39 H 1.09003 * 110.93718 * 98.23851 * 12 10 8 40 40 H 1.08998 * 110.94289 * 334.56044 * 12 10 8 41 41 H 1.07997 * 120.01720 * 359.50585 * 14 13 12 42 42 H 1.07997 * 120.11079 * 180.27227 * 15 14 13 43 43 H 1.08002 * 119.82091 * 180.16039 * 16 15 14 44 44 H 1.07993 * 119.87625 * 180.02562 * 17 16 15 45 45 H 0.96993 * 119.99956 * 265.00384 * 20 4 2 46 46 H 0.97002 * 119.99903 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6443 1.2951 6 6 1.4299 -0.0762 2.4953 7 7 1.8227 -0.8397 3.6824 8 6 1.3987 -0.4542 4.9022 9 8 0.6923 0.5250 5.0173 10 6 1.8023 -1.2399 6.1233 11 1 2.8876 -1.2817 6.2155 12 6 1.2003 -2.6643 6.0821 13 6 0.8810 -2.9121 7.5437 14 6 0.5882 -4.0613 8.2444 15 6 0.3411 -3.9977 9.6042 16 6 0.3889 -2.7782 10.2544 17 6 0.6785 -1.6258 9.5540 18 6 0.9268 -1.6809 8.1846 19 8 1.2115 -0.6790 7.3080 20 7 1.6524 -2.1329 1.1905 21 6 2.4346 -3.0300 0.5134 22 1 3.3370 -2.6969 0.0224 23 6 2.0671 -4.3674 0.4574 24 7 0.9671 -4.7733 1.0554 25 14 3.1345 -5.5914 -0.4657 26 1 4.3068 -4.8878 -1.0449 27 1 3.6019 -6.6452 0.4704 28 1 2.3428 -6.2142 -1.5569 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 0.3434 -0.0736 2.4081 37 1 1.7896 0.9487 2.5870 38 1 2.3873 -1.6230 3.5903 39 1 1.9308 -3.3855 5.7153 40 1 0.2946 -2.6872 5.4761 41 1 0.5512 -5.0115 7.7325 42 1 0.1157 -4.8980 10.1565 43 1 0.1987 -2.7280 11.3164 44 1 0.7142 -0.6776 10.0696 45 1 0.8418 -2.4319 1.6313 46 1 0.7105 -5.7079 1.0165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753835451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:34 Heat of formation + Delta-G solvation = -36.599179 kcal Electronic energy + Delta-G solvation = -26815.217298 eV Core-core repulsion = 23091.284607 eV Total energy + Delta-G solvation = -3723.932691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37502 -39.26348 -37.60379 -37.03597 -33.94663 -33.31010 -32.72677 -30.54031 -30.12833 -29.74429 -27.28747 -26.70731 -24.68532 -23.60658 -22.52109 -22.25892 -21.67759 -20.28963 -18.79294 -17.68858 -17.49368 -16.92563 -16.85782 -16.14526 -15.77763 -15.14010 -14.77876 -14.49380 -14.18257 -13.79802 -13.65274 -13.56219 -13.35486 -13.24449 -13.18416 -13.03156 -12.84306 -12.60524 -12.10688 -11.97674 -11.82665 -11.49435 -11.24577 -11.14466 -11.05380 -10.93768 -10.87638 -10.69625 -10.39565 -10.21515 -9.85303 -9.73594 -9.60006 -9.00686 -8.99249 -8.71170 -8.21874 -7.09668 -5.88733 -3.18688 1.18435 1.28104 2.68539 2.76822 3.34643 3.41866 3.43422 3.54762 3.75607 4.35015 4.45987 4.49110 4.77767 4.85301 4.93927 5.00258 5.17835 5.27366 5.30701 5.32713 5.45259 5.48301 5.58935 5.66367 5.70860 5.76072 5.77205 5.92439 5.94805 6.05044 6.11826 6.20181 6.29984 6.31807 6.33890 6.37222 6.39538 6.48274 6.55822 6.67130 6.78993 6.95745 7.00682 7.09117 7.60723 7.77795 8.28607 8.40470 9.41237 9.95091 10.31136 11.32961 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011496 B = 0.003751 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.034172 B = 7463.361316 C = 9463.058571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.111 3.889 7 N -0.705 5.705 8 C 0.516 3.484 9 O -0.531 6.531 10 C 0.065 3.935 11 H 0.112 0.888 12 C -0.099 4.099 13 C -0.168 4.168 14 C -0.067 4.067 15 C -0.151 4.151 16 C -0.088 4.088 17 C -0.139 4.139 18 C 0.106 3.894 19 O -0.276 6.276 20 N -0.720 5.720 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.008 4.008 24 N -0.929 5.929 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.411 0.589 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.537 4.914 12.575 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.358 5.358 8 C 0.299 3.701 9 O -0.407 6.407 10 C 0.005 3.995 11 H 0.129 0.871 12 C -0.137 4.137 13 C -0.168 4.168 14 C -0.085 4.085 15 C -0.169 4.169 16 C -0.106 4.106 17 C -0.158 4.158 18 C 0.060 3.940 19 O -0.188 6.188 20 N -0.362 5.362 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.204 4.204 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.135 5.767 12.562 13.869 hybrid contribution 0.532 -1.371 -0.679 1.620 sum 1.667 4.396 11.883 12.780 Atomic orbital electron populations 1.21800 0.95808 1.02354 1.00000 1.21736 0.96052 0.94632 1.00897 1.21917 1.00546 0.97163 1.01013 1.20523 0.97197 0.85927 0.90374 0.92775 1.21891 1.00668 0.94655 0.84088 1.45852 1.52597 1.32084 1.05249 1.19893 0.80986 0.85074 0.84120 1.90716 1.36917 1.26870 1.86196 1.23193 0.99111 0.92527 0.84635 0.87058 1.21771 1.03389 0.94714 0.93788 1.20784 1.06557 0.94272 0.95226 1.20374 0.97203 0.97108 0.93849 1.21033 1.03617 0.97988 0.94295 1.20850 0.98351 0.91688 0.99713 1.20231 1.05979 0.99727 0.89835 1.19659 0.96232 0.86978 0.91132 1.86931 1.76483 1.30064 1.25368 1.42462 1.28855 1.01164 1.63696 1.19250 1.03612 0.88483 1.25948 0.91079 1.24709 0.97647 0.97149 1.00932 1.69666 1.24454 1.15617 1.47924 0.86182 0.79557 0.81558 0.79229 1.20588 1.21911 1.21925 0.93406 0.94120 0.91593 0.90705 0.93479 0.93016 0.93175 0.91072 0.91494 0.75210 0.87533 0.88095 0.85447 0.85508 0.85255 0.85455 0.78050 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.60 37.16 0.32 -2.00 16 2 C -0.11 -1.82 2.88 -90.62 -0.26 -2.08 16 3 C -0.15 -2.01 8.95 37.16 0.33 -1.67 16 4 C 0.17 2.98 2.22 -67.92 -0.15 2.83 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.81 4.53 -4.04 -0.02 1.79 16 7 N -0.70 -11.14 5.38 -60.29 -0.32 -11.46 16 8 C 0.52 8.60 7.13 -10.98 -0.08 8.52 16 9 O -0.53 -10.80 16.57 -13.50 -0.22 -11.02 16 10 C 0.07 0.93 4.05 -26.99 -0.11 0.82 16 11 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 12 C -0.10 -1.34 6.63 -26.52 -0.18 -1.52 16 13 C -0.17 -2.25 6.27 -104.10 -0.65 -2.90 16 14 C -0.07 -0.78 10.03 -39.72 -0.40 -1.18 16 15 C -0.15 -1.51 10.07 -39.52 -0.40 -1.91 16 16 C -0.09 -0.87 10.02 -39.68 -0.40 -1.26 16 17 C -0.14 -1.65 10.06 -39.31 -0.40 -2.04 16 18 C 0.11 1.51 7.04 -38.96 -0.27 1.23 16 19 O -0.28 -4.45 10.39 -39.24 -0.41 -4.86 16 20 N -0.72 -15.63 4.01 -53.42 -0.21 -15.85 16 21 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 24 N -0.93 -25.76 13.06 55.49 0.72 -25.03 16 25 Si 0.90 20.94 29.55 -169.99 -5.02 15.92 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H 0.05 0.74 6.23 -51.93 -0.32 0.41 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.25 7.75 -51.93 -0.40 0.84 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.67 6.68 -51.93 -0.35 0.32 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.25 6.06 -51.93 -0.31 0.94 16 37 H 0.07 1.04 6.81 -51.93 -0.35 0.69 16 38 H 0.41 6.35 8.14 -40.82 -0.33 6.02 16 39 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.10 1.50 7.92 -51.93 -0.41 1.09 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.39 9.13 7.80 -40.82 -0.32 8.82 16 46 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -30.11 376.87 -9.69 -39.80 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -7.00 Total: 14.63 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.90 Total: -7.81 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.19 Total: -52.34 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.63 Total: -15.88 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.11 -9.69 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753835451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.203 kcal (2) G-P(sol) polarization free energy of solvation -30.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds