Wall clock time and date at job start Tue Mar 31 2020 12:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47494 * 2 1 4 4 H 1.09000 * 109.46713 * 305.00854 * 3 2 1 5 5 N 1.46504 * 109.46885 * 65.00098 * 3 2 1 6 6 C 1.34777 * 120.00224 * 275.00266 * 5 3 2 7 7 O 1.21591 * 119.99980 * 0.02562 * 6 5 3 8 8 N 1.34775 * 119.99967 * 179.97438 * 6 5 3 9 9 C 1.47018 * 125.64964 * 359.69417 * 8 6 5 10 10 C 1.54336 * 107.26699 * 178.85064 * 9 8 6 11 11 C 1.55165 * 103.01824 * 338.13804 * 10 9 8 12 12 O 1.42902 * 111.00454 * 277.23646 * 11 10 9 13 13 C 1.50694 * 111.03356 * 153.39477 * 11 10 9 14 14 H 1.08000 * 120.00559 * 272.60766 * 13 11 10 15 15 C 1.37886 * 119.99787 * 92.61592 * 13 11 10 16 16 N 1.31516 * 119.99850 * 173.51804 * 15 13 11 17 17 Si 1.86800 * 120.00052 * 353.51277 * 15 13 11 18 18 H 1.48500 * 109.46940 * 87.32218 * 17 15 13 19 19 H 1.48501 * 109.47233 * 207.32664 * 17 15 13 20 20 H 1.48510 * 109.46710 * 327.32687 * 17 15 13 21 21 C 1.47426 * 125.64615 * 180.02562 * 8 6 5 22 22 C 1.50692 * 109.47326 * 185.00147 * 3 2 1 23 23 C 1.38229 * 120.00311 * 279.72572 * 22 3 2 24 24 C 1.38237 * 120.00118 * 179.81201 * 23 22 3 25 25 C 1.38236 * 119.99792 * 0.41882 * 24 23 22 26 26 C 1.38230 * 120.00330 * 359.81592 * 25 24 23 27 27 C 1.38238 * 119.99843 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47001 * 299.99554 * 1 2 3 29 29 H 1.08993 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47404 * 59.99453 * 1 2 3 31 31 H 1.09000 * 109.47799 * 120.00193 * 2 1 3 32 32 H 1.09004 * 109.47001 * 240.00446 * 2 1 3 33 33 H 0.96997 * 119.99541 * 95.00302 * 5 3 2 34 34 H 1.09002 * 109.87790 * 298.39380 * 9 8 6 35 35 H 1.09002 * 109.88264 * 59.55511 * 9 8 6 36 36 H 1.09003 * 110.84854 * 219.67544 * 10 9 8 37 37 H 1.08993 * 110.51779 * 96.44809 * 10 9 8 38 38 H 0.96694 * 113.99576 * 168.40234 * 12 11 10 39 39 H 0.96998 * 119.99893 * 179.97438 * 16 15 13 40 40 H 1.09006 * 110.36565 * 322.92848 * 21 8 6 41 41 H 1.08997 * 110.37237 * 85.14344 * 21 8 6 42 42 H 1.08001 * 120.00184 * 359.97438 * 23 22 3 43 43 H 1.08006 * 120.00056 * 180.21263 * 24 23 22 44 44 H 1.08006 * 119.99413 * 179.78973 * 25 24 23 45 45 H 1.07997 * 120.00425 * 179.97438 * 26 25 24 46 46 H 1.07999 * 120.00135 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 7 1.6525 2.0975 1.2519 6 6 0.4352 2.6644 1.3671 7 8 -0.3415 2.6319 0.4322 8 7 0.0786 3.2665 2.5190 9 6 0.9128 3.3716 3.7249 10 6 0.1043 4.1643 4.7736 11 6 -0.9212 4.9435 3.9083 12 8 -0.3425 6.1385 3.3799 13 6 -2.1685 5.2529 4.6953 14 1 -2.9761 4.5367 4.7312 15 6 -2.2789 6.4505 5.3696 16 7 -3.4133 6.7764 5.9498 17 14 -0.8172 7.6102 5.4591 18 1 -0.8173 8.4994 4.2698 19 1 -0.9123 8.4323 6.6921 20 1 0.4402 6.8204 5.4865 21 6 -1.2154 3.9227 2.7806 22 6 3.5419 1.4443 -0.1239 23 6 4.3275 1.2086 0.9888 24 6 5.7051 1.2064 0.8744 25 6 6.2972 1.4484 -0.3511 26 6 5.5117 1.6888 -1.4628 27 6 4.1340 1.6868 -1.3493 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 2.2721 2.1231 1.9978 34 1 1.1415 2.3760 4.1054 35 1 1.8358 3.9027 3.4921 36 1 0.7485 4.8524 5.3211 37 1 -0.4050 3.4848 5.4569 38 1 -0.8771 6.5655 2.6966 39 1 -3.4908 7.6187 6.4245 40 1 -1.5677 4.4367 1.8862 41 1 -1.9520 3.1907 3.1116 42 1 3.8650 1.0237 1.9471 43 1 6.3189 1.0189 1.7431 44 1 7.3736 1.4500 -0.4397 45 1 5.9743 1.8783 -2.4202 46 1 3.5203 1.8750 -2.2178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591935310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:17 Heat of formation + Delta-G solvation = -48.683789 kcal Electronic energy + Delta-G solvation = -27309.086491 eV Core-core repulsion = 23584.629772 eV Total energy + Delta-G solvation = -3724.456719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43595 -39.36496 -37.90758 -35.73859 -34.70409 -32.41233 -32.24139 -31.21111 -31.09356 -30.02592 -28.32745 -26.31856 -24.89987 -23.04837 -22.60009 -22.25928 -20.75437 -19.80940 -19.66328 -18.12486 -17.43223 -16.91496 -16.24053 -15.74481 -15.46715 -15.13675 -14.86328 -14.77600 -14.48471 -14.14763 -13.88926 -13.64691 -13.54799 -13.16648 -13.00254 -12.68054 -12.46462 -12.29280 -12.06883 -11.93436 -11.66106 -11.55937 -11.46722 -11.33050 -11.04737 -10.94948 -10.80896 -10.49528 -10.38896 -10.20643 -9.77489 -9.24012 -9.19376 -9.09879 -8.85965 -8.66783 -8.52776 -7.99380 -6.19617 -4.31601 1.04813 1.12802 2.91025 3.45623 3.48767 3.51895 3.56609 3.68783 4.25102 4.36702 4.49491 4.60697 4.72115 4.84667 5.00938 5.04166 5.08756 5.14201 5.22199 5.26210 5.33988 5.41370 5.56552 5.60862 5.69660 5.74692 5.78706 5.85264 5.87290 6.00176 6.09033 6.16550 6.18314 6.24104 6.28687 6.48168 6.53748 6.54965 6.65728 6.68129 6.71438 6.72820 7.05029 7.33989 7.48561 8.12278 8.29013 8.62219 8.81426 8.91052 9.41948 10.89250 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.003321 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.082845 B = 8429.930859 C = 9258.166608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.204 3.796 4 H 0.096 0.904 5 N -0.743 5.743 6 C 0.721 3.279 7 O -0.592 6.592 8 N -0.628 5.628 9 C 0.101 3.899 10 C -0.119 4.119 11 C 0.219 3.781 12 O -0.559 6.559 13 C -0.552 4.552 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.888 5.888 17 Si 0.952 3.048 18 H -0.293 1.293 19 H -0.327 1.327 20 H -0.270 1.270 21 C 0.109 3.891 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.108 4.108 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.393 0.607 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.371 0.629 39 H 0.267 0.733 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.785 -12.434 -10.863 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.099 3.901 4 H 0.114 0.886 5 N -0.400 5.400 6 C 0.423 3.577 7 O -0.470 6.470 8 N -0.365 5.365 9 C -0.022 4.022 10 C -0.158 4.158 11 C 0.179 3.821 12 O -0.367 6.367 13 C -0.589 4.589 14 H 0.099 0.901 15 C -0.131 4.131 16 N -0.523 5.523 17 Si 0.787 3.213 18 H -0.221 1.221 19 H -0.258 1.258 20 H -0.196 1.196 21 C -0.013 4.013 22 C -0.088 4.088 23 C -0.131 4.131 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.126 4.126 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.228 0.772 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.219 0.781 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.553 -12.533 -11.098 24.256 hybrid contribution 0.616 0.744 0.167 0.980 sum 18.169 -11.789 -10.931 24.260 Atomic orbital electron populations 1.21789 0.94267 1.00267 1.03713 1.21946 0.97369 0.95225 1.01960 1.19673 0.89100 0.93643 0.87718 0.88612 1.45236 1.16329 1.61790 1.16610 1.15388 0.81856 0.78176 0.82272 1.90896 1.52109 1.65609 1.38434 1.47713 1.18556 1.58513 1.11747 1.22046 0.94650 0.99175 0.86366 1.22945 0.97887 0.98221 0.96716 1.20251 0.91643 0.81072 0.89149 1.86107 1.52259 1.40801 1.57510 1.21108 1.01073 1.04768 1.31953 0.90056 1.25118 0.96455 0.97955 0.93545 1.69970 1.25097 1.23376 1.33838 0.85638 0.82382 0.78836 0.74412 1.22079 1.25834 1.19609 1.22975 0.83110 0.95698 0.99549 1.20013 0.94960 0.99722 0.94057 1.20951 0.93800 1.00166 0.98201 1.21146 0.94685 0.99882 0.97751 1.21176 0.99867 1.00026 0.93003 1.21145 0.93667 0.99968 0.98776 1.21034 0.94958 0.99577 0.97058 0.91915 0.93858 0.92103 0.92006 0.91373 0.77214 0.92856 0.92574 0.90230 0.89651 0.78077 0.92405 0.91226 0.91281 0.86176 0.85936 0.86113 0.85934 0.85738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.51 37.15 0.32 -1.57 16 2 C -0.13 -1.39 5.59 -26.73 -0.15 -1.54 16 3 C 0.20 2.42 2.46 -69.08 -0.17 2.25 16 4 H 0.10 1.29 7.44 -51.93 -0.39 0.90 16 5 N -0.74 -9.97 4.94 -59.81 -0.30 -10.27 16 6 C 0.72 12.51 7.06 -86.92 -0.61 11.90 16 7 O -0.59 -11.89 13.73 5.29 0.07 -11.82 16 8 N -0.63 -11.19 3.33 -176.22 -0.59 -11.78 16 9 C 0.10 1.60 6.15 -3.06 -0.02 1.58 16 10 C -0.12 -2.27 5.90 -24.89 -0.15 -2.42 16 11 C 0.22 4.75 0.70 -89.61 -0.06 4.69 16 12 O -0.56 -12.09 8.52 -35.23 -0.30 -12.39 16 13 C -0.55 -14.38 8.89 -34.44 -0.31 -14.69 16 14 H 0.08 2.31 8.00 -52.49 -0.42 1.89 16 15 C 0.07 2.04 5.46 -17.82 -0.10 1.94 16 16 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 17 Si 0.95 23.16 24.93 -169.99 -4.24 18.93 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 20 H -0.27 -6.40 5.42 56.52 0.31 -6.09 16 21 C 0.11 2.20 6.07 -2.52 -0.02 2.18 16 22 C -0.09 -0.89 4.96 -104.63 -0.52 -1.41 16 23 C -0.11 -1.06 9.06 -39.58 -0.36 -1.42 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.11 -1.01 9.67 -39.58 -0.38 -1.40 16 28 H 0.06 1.00 5.64 -51.93 -0.29 0.70 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.39 4.61 5.84 -40.82 -0.24 4.37 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.55 6.65 -51.93 -0.35 1.21 16 37 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 38 H 0.37 7.27 8.99 45.56 0.41 7.67 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 1.44 8.02 -51.93 -0.42 1.02 16 41 H 0.07 1.42 7.99 -51.93 -0.41 1.01 16 42 H 0.12 1.00 6.90 -52.49 -0.36 0.64 16 43 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -31.67 362.22 -9.16 -40.83 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.33 Total: 10.39 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.72 Total: -4.01 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.11 Total: -47.38 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.23 Total: -24.21 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.24 Total: 18.93 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.67 -9.16 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591935310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.857 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds