Wall clock time and date at job start Tue Mar 31 2020 12:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47173 * 2 1 4 4 H 1.08999 * 109.47146 * 305.00135 * 3 2 1 5 5 C 1.53007 * 109.47014 * 185.00111 * 3 2 1 6 6 O 1.42901 * 109.46731 * 65.00631 * 3 2 1 7 7 C 1.35715 * 116.99383 * 204.90954 * 6 3 2 8 8 C 1.38993 * 119.91235 * 354.79059 * 7 6 3 9 9 C 1.37710 * 120.08392 * 179.97438 * 8 7 6 10 10 C 1.39725 * 119.91372 * 0.02562 * 9 8 7 11 11 C 1.47608 * 120.08914 * 179.97438 * 10 9 8 12 12 O 1.21586 * 119.99880 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99880 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99641 * 180.02562 * 13 11 10 15 15 C 1.53495 * 114.20646 * 154.99830 * 14 13 11 16 16 N 1.47074 * 87.98698 * 87.71498 * 15 14 13 17 17 C 1.36936 * 136.05638 * 207.08730 * 16 15 14 18 18 H 1.07999 * 120.00391 * 6.53186 * 17 16 15 19 19 C 1.38816 * 119.99556 * 186.52924 * 17 16 15 20 20 N 1.31614 * 120.00262 * 6.39165 * 19 17 16 21 21 Si 1.86798 * 119.99632 * 186.39682 * 19 17 16 22 22 H 1.48508 * 109.46880 * 265.01283 * 21 19 17 23 23 H 1.48499 * 109.47540 * 25.01212 * 21 19 17 24 24 H 1.48502 * 109.46995 * 145.01982 * 21 19 17 25 25 C 1.47067 * 87.88302 * 27.34081 * 16 15 14 26 26 C 1.39735 * 119.82362 * 0.26956 * 10 9 8 27 27 C 1.37703 * 119.91248 * 359.42813 * 26 10 9 28 28 H 1.09004 * 109.46860 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46749 * 299.99479 * 1 2 3 30 30 H 1.08999 * 109.47402 * 59.99790 * 1 2 3 31 31 H 1.09002 * 109.47177 * 240.00342 * 2 1 3 32 32 H 1.08999 * 109.47402 * 120.00210 * 2 1 3 33 33 H 1.08999 * 109.47184 * 300.00001 * 5 3 2 34 34 H 1.08998 * 109.46537 * 60.00279 * 5 3 2 35 35 H 1.08999 * 109.46365 * 180.02562 * 5 3 2 36 36 H 1.07994 * 119.96031 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.03843 * 179.97438 * 9 8 7 38 38 H 0.97000 * 120.00641 * 359.97438 * 13 11 10 39 39 H 1.09000 * 113.28177 * 21.93194 * 14 13 11 40 40 H 1.09002 * 113.47038 * 332.93688 * 15 14 13 41 41 H 1.09000 * 113.52071 * 202.50276 * 15 14 13 42 42 H 0.97000 * 120.00640 * 179.97438 * 20 19 17 43 43 H 1.08999 * 113.46400 * 87.43432 * 25 16 15 44 44 H 1.08998 * 113.47059 * 217.88046 * 25 16 15 45 45 H 1.08002 * 120.04466 * 179.72261 * 26 10 9 46 46 H 1.07999 * 119.95587 * 180.27627 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1258 6 8 1.6620 2.0813 1.2211 7 6 1.5542 3.4340 1.2010 8 6 1.9121 4.1410 0.0591 9 6 1.8035 5.5136 0.0346 10 6 1.3335 6.1955 1.1599 11 6 1.2162 7.6668 1.1381 12 8 1.5292 8.2869 0.1402 13 7 0.7621 8.3227 2.2244 14 6 0.6451 9.7829 2.2025 15 6 -0.3941 10.3458 3.1820 16 7 0.6611 10.3708 4.2062 17 6 0.7108 10.2961 5.5726 18 1 -0.1869 10.0855 6.1350 19 6 1.9150 10.4911 6.2350 20 7 2.9814 10.8710 5.5636 21 14 2.0221 10.2142 8.0792 22 1 1.8310 11.5064 8.7857 23 1 0.9647 9.2597 8.4987 24 1 3.3557 9.6566 8.4194 25 6 1.6387 10.5177 3.1174 26 6 0.9806 5.4816 2.3081 27 6 1.0861 4.1087 2.3225 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9995 0.9053 0.7160 34 1 3.8531 0.9570 -1.0572 35 1 3.9282 2.4720 -0.1253 36 1 2.2757 3.6132 -0.8101 37 1 2.0822 6.0622 -0.8529 38 1 0.5120 7.8280 3.0204 39 1 0.5792 10.1948 1.1955 40 1 -1.2010 9.6484 3.4070 41 1 -0.7574 11.3365 2.9089 42 1 3.8228 11.0077 6.0264 43 1 1.8119 11.5538 2.8265 44 1 2.5637 9.9667 3.2873 45 1 0.6211 6.0055 3.1815 46 1 0.8093 3.5558 3.2081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031208921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:44 Heat of formation + Delta-G solvation = 3.951194 kcal Electronic energy + Delta-G solvation = -26082.801833 eV Core-core repulsion = 22360.627539 eV Total energy + Delta-G solvation = -3722.174294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.65747 -39.59159 -38.04825 -37.04373 -34.50220 -33.36310 -31.97711 -31.22620 -30.24961 -29.95368 -27.52843 -24.68124 -24.60595 -23.81039 -23.34704 -22.58868 -21.16828 -20.25033 -19.32905 -18.61816 -17.44376 -16.75436 -16.17045 -15.68461 -15.39758 -15.13604 -14.92383 -14.67637 -14.39687 -14.07413 -13.94566 -13.75595 -13.67440 -13.56137 -13.22609 -12.90487 -12.63793 -12.52326 -12.35117 -12.19526 -12.00339 -11.56145 -11.48129 -11.35005 -11.25271 -10.93114 -10.87410 -10.77680 -10.60425 -10.22087 -9.92796 -9.60962 -9.41257 -9.16536 -8.83636 -8.46801 -8.19260 -6.93213 -5.80712 -3.13182 0.92995 1.25641 2.88145 3.05740 3.36695 3.41645 3.44334 3.58513 3.94455 4.24268 4.42995 4.46124 4.56798 4.68945 4.71852 4.88308 5.00975 5.05317 5.16105 5.17067 5.19519 5.23609 5.36207 5.41939 5.44901 5.52892 5.54175 5.54530 5.69044 5.75502 5.89311 5.90333 6.08014 6.15221 6.20684 6.23079 6.34096 6.41196 6.54145 6.55262 6.82730 7.18632 7.20586 7.31883 7.53644 7.92664 8.03939 8.64125 8.99761 9.66789 10.60653 11.37283 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.002701 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.265488 B =10365.579324 C =11266.179960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.078 3.922 4 H 0.076 0.924 5 C -0.183 4.183 6 O -0.305 6.305 7 C 0.153 3.847 8 C -0.223 4.223 9 C -0.020 4.020 10 C -0.167 4.167 11 C 0.560 3.440 12 O -0.552 6.552 13 N -0.685 5.685 14 C 0.084 3.916 15 C 0.108 3.892 16 N -0.609 5.609 17 C -0.223 4.223 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.916 5.916 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.279 1.279 24 H -0.290 1.290 25 C 0.149 3.851 26 C -0.042 4.042 27 C -0.161 4.161 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.403 0.597 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.254 0.746 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.137 0.863 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -21.014 -12.808 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.022 3.978 4 H 0.094 0.906 5 C -0.240 4.240 6 O -0.219 6.219 7 C 0.107 3.893 8 C -0.242 4.242 9 C -0.039 4.039 10 C -0.170 4.170 11 C 0.347 3.653 12 O -0.432 6.432 13 N -0.334 5.334 14 C -0.023 4.023 15 C -0.019 4.019 16 N -0.336 5.336 17 C -0.351 4.351 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.205 1.205 24 H -0.216 1.216 25 C 0.022 3.978 26 C -0.061 4.061 27 C -0.179 4.179 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.239 0.761 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.155 0.845 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.188 -20.692 -12.999 24.644 hybrid contribution 0.203 -0.030 1.345 1.361 sum -2.985 -20.722 -11.654 23.961 Atomic orbital electron populations 1.21773 0.95035 1.01922 1.02512 1.21637 0.96922 0.93804 1.03240 1.22566 0.95206 0.94003 0.85997 0.90619 1.22403 0.95064 1.03493 1.03051 1.86081 1.83252 1.16794 1.35754 1.19226 0.93463 0.82447 0.94200 1.21219 1.09225 0.94998 0.98726 1.21038 0.92428 0.92922 0.97485 1.19934 1.07719 0.93472 0.95871 1.18084 0.77240 0.86746 0.83205 1.90729 1.50537 1.68939 1.33020 1.45368 1.64957 1.07446 1.15676 1.22660 1.00789 0.79832 0.98999 1.22782 0.92956 0.97681 0.88526 1.45865 1.01942 1.85020 1.00737 1.18930 0.94949 1.41968 0.79225 0.90085 1.24846 0.96167 1.01249 0.98011 1.69855 1.00486 1.51191 1.34650 0.86126 0.77115 0.77781 0.84855 1.21619 1.20482 1.21607 1.22495 0.94510 0.96496 0.84291 1.21234 0.94628 0.93186 0.97039 1.20352 1.05826 0.93758 0.97993 0.92422 0.91850 0.92757 0.90039 0.90715 0.91313 0.90935 0.91489 0.84914 0.84445 0.76092 0.88435 0.93833 0.93680 0.93570 0.94321 0.91746 0.84540 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.81 37.16 0.36 -0.63 16 2 C -0.12 -0.72 5.64 -26.73 -0.15 -0.87 16 3 C 0.08 0.59 2.22 -26.73 -0.06 0.53 16 4 H 0.08 0.53 6.29 -51.93 -0.33 0.21 16 5 C -0.18 -1.24 9.17 37.16 0.34 -0.90 16 6 O -0.31 -3.17 9.32 -18.85 -0.18 -3.35 16 7 C 0.15 1.76 6.61 -39.02 -0.26 1.50 16 8 C -0.22 -2.47 8.22 -39.49 -0.32 -2.80 16 9 C -0.02 -0.26 9.58 -39.22 -0.38 -0.64 16 10 C -0.17 -2.46 5.87 -104.96 -0.62 -3.08 16 11 C 0.56 9.96 7.76 -12.44 -0.10 9.87 16 12 O -0.55 -11.34 15.93 5.29 0.08 -11.25 16 13 N -0.69 -12.28 5.35 -54.50 -0.29 -12.58 16 14 C 0.08 1.63 4.61 -67.67 -0.31 1.32 16 15 C 0.11 2.15 8.44 -8.50 -0.07 2.08 16 16 N -0.61 -15.26 3.76 -184.59 -0.69 -15.96 16 17 C -0.22 -6.12 10.73 -15.06 -0.16 -6.28 16 18 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.92 -27.29 11.81 55.49 0.66 -26.63 16 21 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.15 3.56 7.06 -8.37 -0.06 3.50 16 26 C -0.04 -0.55 9.53 -39.22 -0.37 -0.92 16 27 C -0.16 -1.91 9.97 -39.49 -0.39 -2.30 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.49 7.82 -51.92 -0.41 0.08 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.52 6.91 -51.93 -0.36 0.16 16 36 H 0.13 1.16 5.41 -52.49 -0.28 0.87 16 37 H 0.14 1.77 7.64 -52.49 -0.40 1.37 16 38 H 0.40 6.80 6.78 -40.82 -0.28 6.52 16 39 H 0.10 1.85 7.45 -51.93 -0.39 1.46 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.72 7.58 -51.93 -0.39 1.33 16 45 H 0.14 1.64 6.40 -52.49 -0.34 1.30 16 46 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -32.85 377.56 -9.35 -42.20 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -6.94 Total: 4.89 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.64 Total: 0.15 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.33 Total: -55.16 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.09 Total: -14.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.85 -9.35 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031208921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.151 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds