Wall clock time and date at job start Tue Mar 31 2020 14:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46677 * 2 1 4 4 O 1.42897 * 109.46994 * 180.02562 * 3 2 1 5 5 C 1.35916 * 117.00159 * 180.02562 * 4 3 2 6 6 C 1.38843 * 119.98128 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.23412 * 179.97438 * 6 5 4 8 8 C 1.38005 * 120.20939 * 359.76865 * 7 6 5 9 9 C 1.39567 * 119.96119 * 0.51078 * 8 7 6 10 10 C 1.47861 * 120.11245 * 179.74566 * 9 8 7 11 11 O 1.21554 * 119.99218 * 224.31756 * 10 9 8 12 12 N 1.34770 * 120.00425 * 44.32360 * 10 9 8 13 13 C 1.46963 * 120.59392 * 186.16499 * 12 10 9 14 14 C 1.53362 * 108.63820 * 235.20105 * 13 12 10 15 15 N 1.46966 * 108.63664 * 310.57628 * 14 13 12 16 16 C 1.36932 * 120.59856 * 235.19903 * 15 14 13 17 17 H 1.07994 * 119.99944 * 148.18724 * 16 15 14 18 18 C 1.38811 * 119.99965 * 327.92297 * 16 15 14 19 19 N 1.31625 * 119.99944 * 349.46187 * 18 16 15 20 20 Si 1.86795 * 120.00187 * 169.47336 * 18 16 15 21 21 H 1.48496 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47600 * 119.99604 * 20 18 16 23 23 H 1.48505 * 109.46905 * 239.99306 * 20 18 16 24 24 C 1.46967 * 118.80963 * 55.47520 * 15 14 13 25 25 C 1.46959 * 120.59493 * 6.14017 * 12 10 9 26 26 C 1.38456 * 119.98180 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.46959 * 60.00240 * 1 2 3 28 28 H 1.08996 * 109.46538 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46747 * 299.99901 * 1 2 3 30 30 H 1.08999 * 109.46747 * 240.00098 * 2 1 3 31 31 H 1.08998 * 109.46959 * 119.99760 * 2 1 3 32 32 H 1.08994 * 109.47207 * 59.99837 * 3 2 1 33 33 H 1.08998 * 109.47230 * 299.99594 * 3 2 1 34 34 H 1.08001 * 119.88390 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.89561 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.02111 * 180.25633 * 8 7 6 37 37 H 1.09004 * 109.60784 * 115.45618 * 13 12 10 38 38 H 1.09003 * 109.61333 * 354.95246 * 13 12 10 39 39 H 1.08995 * 109.61474 * 190.83048 * 14 13 12 40 40 H 1.09002 * 109.60728 * 70.31751 * 14 13 12 41 41 H 0.96995 * 119.99868 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.61245 * 64.26783 * 24 15 14 43 43 H 1.08996 * 109.61034 * 184.77489 * 24 15 14 44 44 H 1.09001 * 109.61211 * 244.54540 * 25 12 10 45 45 H 1.09006 * 109.61014 * 4.88355 * 25 12 10 46 46 H 1.08002 * 120.10581 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0860 2.6536 -0.0001 6 6 3.3294 3.8178 0.0014 7 6 3.9515 5.0524 0.0024 8 6 5.3290 5.1358 0.0067 9 6 6.0979 3.9710 -0.0007 10 6 7.5740 4.0565 -0.0019 11 8 8.2234 3.3438 -0.7421 12 7 8.1994 4.9243 0.8179 13 6 9.6539 5.1176 0.7333 14 6 10.2630 4.8665 2.1182 15 7 9.5028 5.6370 3.1124 16 6 10.1382 6.5188 3.9453 17 1 9.6262 7.4079 4.2823 18 6 11.4385 6.2670 4.3608 19 7 11.9876 5.0933 4.1299 20 14 12.4089 7.5938 5.2481 21 1 11.5719 8.8129 5.3826 22 1 12.7950 7.1066 6.5967 23 1 13.6318 7.9167 4.4697 24 6 8.0491 5.4396 3.2007 25 6 7.4392 5.6948 1.8119 26 6 5.4686 2.7257 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2510 3.7587 0.0018 35 1 3.3577 5.9545 0.0040 36 1 5.8119 6.1018 0.0117 37 1 9.8695 6.1386 0.4185 38 1 10.0753 4.4141 0.0152 39 1 11.3042 5.1888 2.1239 40 1 10.2049 3.8044 2.3563 41 1 12.8961 4.9172 4.4206 42 1 7.8371 4.4173 3.5140 43 1 7.6279 6.1404 3.9214 44 1 7.4972 6.7569 1.5739 45 1 6.3973 5.3745 1.8042 46 1 6.0583 1.8208 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071138089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:08 Heat of formation + Delta-G solvation = -19.672654 kcal Electronic energy + Delta-G solvation = -26519.482104 eV Core-core repulsion = 22796.283402 eV Total energy + Delta-G solvation = -3723.198701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.57313 -39.49505 -37.43478 -36.68456 -34.31602 -33.87711 -31.50424 -31.14448 -30.61808 -29.57163 -27.08064 -26.82411 -24.35279 -23.40237 -22.69936 -22.39243 -21.72858 -20.49405 -19.20013 -18.00305 -16.85882 -16.58349 -16.35481 -16.28298 -15.64220 -15.42953 -14.89582 -14.69861 -14.43270 -14.06433 -13.95664 -13.64015 -13.38666 -13.31452 -13.26130 -12.90902 -12.75788 -12.52842 -12.35548 -11.89614 -11.81733 -11.65511 -11.48011 -11.17550 -11.06752 -10.95037 -10.81993 -10.70298 -10.54137 -10.21966 -10.01381 -9.85605 -9.49249 -9.06564 -8.59423 -8.32856 -8.24765 -6.65107 -5.83749 -3.35256 0.90492 1.29549 2.79388 3.03466 3.33408 3.40536 3.42328 3.44386 3.75121 4.42476 4.45073 4.47959 4.60409 4.68348 4.79021 4.87406 4.99247 5.00579 5.08971 5.20869 5.30248 5.31991 5.34515 5.40782 5.54669 5.65148 5.75553 5.76686 5.78865 5.82949 5.92283 6.06234 6.13725 6.23048 6.30536 6.32942 6.39713 6.48495 6.55480 6.73031 6.89205 7.22357 7.28235 7.59110 7.72497 7.87415 8.39796 8.50529 9.13688 9.74218 10.33153 11.23127 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.002557 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.186140 B =10949.559674 C =11092.712906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.058 3.942 4 O -0.314 6.314 5 C 0.124 3.876 6 C -0.195 4.195 7 C -0.086 4.086 8 C -0.125 4.125 9 C -0.076 4.076 10 C 0.551 3.449 11 O -0.546 6.546 12 N -0.587 5.587 13 C 0.086 3.914 14 C 0.159 3.841 15 N -0.592 5.592 16 C -0.257 4.257 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.131 3.869 25 C 0.082 3.918 26 C -0.102 4.102 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.024 0.976 41 H 0.255 0.745 42 H 0.024 0.976 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.966 -3.537 -8.485 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.228 6.228 5 C 0.079 3.921 6 C -0.214 4.214 7 C -0.104 4.104 8 C -0.144 4.144 9 C -0.079 4.079 10 C 0.338 3.662 11 O -0.425 6.425 12 N -0.318 5.318 13 C -0.037 4.037 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.386 4.386 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.003 3.997 25 C -0.043 4.043 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.337 -4.137 -8.790 23.445 hybrid contribution 0.331 0.824 0.577 1.059 sum -21.006 -3.312 -8.213 22.797 Atomic orbital electron populations 1.21691 0.94250 1.02561 1.02182 1.21494 0.95987 0.94860 1.03908 1.22880 0.78517 0.98890 1.01401 1.86078 1.21204 1.26797 1.88746 1.18768 0.91842 0.84258 0.97210 1.21337 1.00002 0.92362 1.07664 1.20854 0.94201 0.97113 0.98246 1.21289 0.93770 0.97880 1.01427 1.19769 0.93614 0.93406 1.01099 1.18274 0.86769 0.80324 0.80809 1.90752 1.66833 1.42870 1.42077 1.47980 1.09243 1.40400 1.34213 1.22585 0.78245 1.00896 1.02000 1.21202 0.97455 0.94518 0.83534 1.43989 1.00955 1.48000 1.38495 1.19215 0.97067 0.99559 1.22779 0.91566 1.25236 0.99326 0.96151 0.98705 1.69969 1.14718 1.20343 1.49587 0.86163 0.79936 0.81118 0.79162 1.20194 1.21608 1.21494 1.21384 0.86865 0.98678 0.92737 1.22731 0.95248 0.95446 0.90854 1.20384 0.91313 0.97917 1.02549 0.92390 0.91706 0.92338 0.90752 0.90684 0.91947 0.92049 0.85366 0.85185 0.84950 0.91962 0.90027 0.88065 0.95795 0.93444 0.95838 0.91456 0.91531 0.90112 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.83 6.30 -26.73 -0.17 -1.00 16 3 C 0.06 0.46 4.74 37.16 0.18 0.64 16 4 O -0.31 -3.72 10.13 -19.48 -0.20 -3.92 16 5 C 0.12 1.57 6.68 -39.28 -0.26 1.31 16 6 C -0.19 -2.01 9.03 -39.35 -0.36 -2.37 16 7 C -0.09 -0.88 10.03 -39.66 -0.40 -1.27 16 8 C -0.12 -1.55 7.42 -39.17 -0.29 -1.84 16 9 C -0.08 -1.16 4.98 -104.98 -0.52 -1.69 16 10 C 0.55 10.34 7.27 -12.32 -0.09 10.25 16 11 O -0.55 -11.94 16.40 5.32 0.09 -11.85 16 12 N -0.59 -11.03 2.95 -173.32 -0.51 -11.54 16 13 C 0.09 1.76 6.60 -3.60 -0.02 1.73 16 14 C 0.16 3.84 5.45 -3.60 -0.02 3.82 16 15 N -0.59 -14.54 2.95 -171.77 -0.51 -15.04 16 16 C -0.26 -6.82 9.57 -15.06 -0.14 -6.96 16 17 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 18 C 0.00 0.13 5.05 -17.43 -0.09 0.04 16 19 N -0.90 -25.85 11.06 55.49 0.61 -25.24 16 20 Si 0.91 21.23 29.57 -169.99 -5.03 16.20 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.13 2.65 6.70 -3.36 -0.02 2.63 16 25 C 0.08 1.37 5.27 -3.37 -0.02 1.35 16 26 C -0.10 -1.52 9.62 -39.02 -0.38 -1.89 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.43 7.65 -51.93 -0.40 0.04 16 33 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 34 H 0.13 0.98 6.28 -52.49 -0.33 0.65 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.52 6.99 -52.49 -0.37 1.15 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.68 6.99 -51.93 -0.36 1.31 16 39 H 0.10 2.68 6.06 -51.93 -0.31 2.36 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.16 4.88 -51.93 -0.25 0.90 16 46 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 369.01 15.07 5.56 5.56 Total: -1.00 -31.95 369.01 -9.25 -41.20 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.03 Total: 0.23 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -2.23 Total: 4.41 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.40 Total: -51.82 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.11 Total: -15.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.95 -9.25 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071138089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.527 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds