Wall clock time and date at job start Tue Mar 31 2020 14:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46677 * 2 1 4 4 O 1.42897 * 109.46994 * 180.02562 * 3 2 1 5 5 C 1.35916 * 117.00159 * 180.02562 * 4 3 2 6 6 C 1.38843 * 119.98128 * 0.02562 * 5 4 3 7 7 C 1.38251 * 120.23412 * 179.97438 * 6 5 4 8 8 C 1.38005 * 120.20939 * 359.76865 * 7 6 5 9 9 C 1.39567 * 119.96119 * 0.51078 * 8 7 6 10 10 C 1.47861 * 120.11245 * 179.74566 * 9 8 7 11 11 O 1.21554 * 119.99218 * 224.31756 * 10 9 8 12 12 N 1.34770 * 120.00425 * 44.32360 * 10 9 8 13 13 C 1.46963 * 120.59392 * 186.16499 * 12 10 9 14 14 C 1.53362 * 108.63820 * 235.20105 * 13 12 10 15 15 N 1.46966 * 108.63664 * 310.57628 * 14 13 12 16 16 C 1.36932 * 120.59856 * 235.19903 * 15 14 13 17 17 H 1.07994 * 119.99944 * 148.18724 * 16 15 14 18 18 C 1.38811 * 119.99965 * 327.92297 * 16 15 14 19 19 N 1.31625 * 119.99944 * 349.46187 * 18 16 15 20 20 Si 1.86795 * 120.00187 * 169.47336 * 18 16 15 21 21 H 1.48496 * 109.47201 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47600 * 119.99604 * 20 18 16 23 23 H 1.48505 * 109.46905 * 239.99306 * 20 18 16 24 24 C 1.46967 * 118.80963 * 55.47520 * 15 14 13 25 25 C 1.46959 * 120.59493 * 6.14017 * 12 10 9 26 26 C 1.38456 * 119.98180 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.46959 * 60.00240 * 1 2 3 28 28 H 1.08996 * 109.46538 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46747 * 299.99901 * 1 2 3 30 30 H 1.08999 * 109.46747 * 240.00098 * 2 1 3 31 31 H 1.08998 * 109.46959 * 119.99760 * 2 1 3 32 32 H 1.08994 * 109.47207 * 59.99837 * 3 2 1 33 33 H 1.08998 * 109.47230 * 299.99594 * 3 2 1 34 34 H 1.08001 * 119.88390 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.89561 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.02111 * 180.25633 * 8 7 6 37 37 H 1.09004 * 109.60784 * 115.45618 * 13 12 10 38 38 H 1.09003 * 109.61333 * 354.95246 * 13 12 10 39 39 H 1.08995 * 109.61474 * 190.83048 * 14 13 12 40 40 H 1.09002 * 109.60728 * 70.31751 * 14 13 12 41 41 H 0.96995 * 119.99868 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.61245 * 64.26783 * 24 15 14 43 43 H 1.08996 * 109.61034 * 184.77489 * 24 15 14 44 44 H 1.09001 * 109.61211 * 244.54540 * 25 12 10 45 45 H 1.09006 * 109.61014 * 4.88355 * 25 12 10 46 46 H 1.08002 * 120.10581 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0860 2.6536 -0.0001 6 6 3.3294 3.8178 0.0014 7 6 3.9515 5.0524 0.0024 8 6 5.3290 5.1358 0.0067 9 6 6.0979 3.9710 -0.0007 10 6 7.5740 4.0565 -0.0019 11 8 8.2234 3.3438 -0.7421 12 7 8.1994 4.9243 0.8179 13 6 9.6539 5.1176 0.7333 14 6 10.2630 4.8665 2.1182 15 7 9.5028 5.6370 3.1124 16 6 10.1382 6.5188 3.9453 17 1 9.6262 7.4079 4.2823 18 6 11.4385 6.2670 4.3608 19 7 11.9876 5.0933 4.1299 20 14 12.4089 7.5938 5.2481 21 1 11.5719 8.8129 5.3826 22 1 12.7950 7.1066 6.5967 23 1 13.6318 7.9167 4.4697 24 6 8.0491 5.4396 3.2007 25 6 7.4392 5.6948 1.8119 26 6 5.4686 2.7257 -0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 2.2510 3.7587 0.0018 35 1 3.3577 5.9545 0.0040 36 1 5.8119 6.1018 0.0117 37 1 9.8695 6.1386 0.4185 38 1 10.0753 4.4141 0.0152 39 1 11.3042 5.1888 2.1239 40 1 10.2049 3.8044 2.3563 41 1 12.8961 4.9172 4.4206 42 1 7.8371 4.4173 3.5140 43 1 7.6279 6.1404 3.9214 44 1 7.4972 6.7569 1.5739 45 1 6.3973 5.3745 1.8042 46 1 6.0583 1.8208 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071138089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:07 Heat of formation + Delta-G solvation = -38.440448 kcal Electronic energy + Delta-G solvation = -26520.295936 eV Core-core repulsion = 22796.283402 eV Total energy + Delta-G solvation = -3724.012534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70157 -40.68378 -38.63256 -38.17079 -35.70850 -34.81577 -33.13365 -32.63852 -31.84121 -30.78205 -28.75354 -27.50501 -25.92031 -24.87165 -24.11655 -23.40816 -22.55516 -21.85131 -20.57862 -19.37420 -18.39167 -17.68513 -17.25838 -17.22222 -16.95675 -16.80234 -16.69054 -16.06307 -15.48572 -15.28286 -15.12920 -15.06794 -14.92566 -14.78969 -14.55819 -14.05779 -13.63497 -13.55348 -13.30917 -13.09422 -13.00862 -12.79068 -12.66391 -12.48646 -12.38294 -12.30479 -12.16708 -12.03317 -11.91665 -11.79486 -11.66936 -11.50587 -10.97398 -10.63630 -10.09519 -9.86035 -9.25413 -8.62896 -7.87945 -5.43804 -0.11682 0.37197 1.47874 1.49641 1.56253 1.60361 1.90956 2.25524 2.50181 2.71392 3.28218 3.40306 3.58689 3.77624 3.94012 3.97003 4.08115 4.11231 4.22572 4.22705 4.29102 4.31453 4.36815 4.48512 4.50533 4.57848 4.59303 4.63759 4.77386 4.80839 4.84255 4.88096 5.03093 5.13916 5.19031 5.19532 5.21400 5.30684 5.35767 5.36504 5.43274 5.60356 5.63961 5.69023 6.37180 6.38476 6.42141 7.02093 7.09491 7.76385 8.32412 9.17119 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.002557 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.186140 B =10949.559674 C =11092.712906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C 0.050 3.950 4 O -0.336 6.336 5 C 0.120 3.880 6 C -0.180 4.180 7 C -0.070 4.070 8 C -0.125 4.125 9 C -0.097 4.097 10 C 0.549 3.451 11 O -0.589 6.589 12 N -0.591 5.591 13 C 0.100 3.900 14 C 0.171 3.829 15 N -0.608 5.608 16 C -0.260 4.260 17 H 0.078 0.922 18 C -0.053 4.053 19 N -0.940 5.940 20 Si 0.974 3.026 21 H -0.260 1.260 22 H -0.295 1.295 23 H -0.292 1.292 24 C 0.125 3.875 25 C 0.094 3.906 26 C -0.129 4.129 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.074 0.926 40 H -0.013 1.013 41 H 0.250 0.750 42 H 0.007 0.993 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.112 0.888 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.903 -1.001 -8.622 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.163 4.163 3 C -0.024 4.024 4 O -0.251 6.251 5 C 0.075 3.925 6 C -0.199 4.199 7 C -0.088 4.088 8 C -0.144 4.144 9 C -0.100 4.100 10 C 0.339 3.661 11 O -0.471 6.471 12 N -0.322 5.322 13 C -0.024 4.024 14 C 0.044 3.956 15 N -0.332 5.332 16 C -0.390 4.390 17 H 0.096 0.904 18 C -0.248 4.248 19 N -0.586 5.586 20 Si 0.802 3.198 21 H -0.184 1.184 22 H -0.222 1.222 23 H -0.219 1.219 24 C -0.001 4.001 25 C -0.029 4.029 26 C -0.149 4.149 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.182 0.818 35 H 0.191 0.809 36 H 0.164 0.836 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.005 0.995 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.130 0.870 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -25.335 -1.584 -8.923 26.908 hybrid contribution 1.411 -0.060 0.616 1.541 sum -23.924 -1.643 -8.307 25.379 Atomic orbital electron populations 1.21672 0.92467 1.03157 1.02925 1.21525 0.97409 0.94214 1.03161 1.23203 0.76443 0.99929 1.02865 1.86068 1.23496 1.26876 1.88637 1.18808 0.91103 0.85552 0.97052 1.21766 1.01650 0.91345 1.05099 1.21320 0.93290 0.98582 0.95563 1.21483 0.94831 0.97022 1.01024 1.19497 0.91248 0.94916 1.04305 1.18897 0.88454 0.79016 0.79766 1.90715 1.68258 1.44321 1.43771 1.48038 1.08456 1.40861 1.34827 1.22210 0.79679 1.01337 0.99133 1.20876 0.96642 0.92254 0.85809 1.44241 1.02729 1.47720 1.38487 1.19613 0.97301 1.00054 1.22043 0.90441 1.26052 1.00594 0.98076 1.00057 1.70153 1.14714 1.22461 1.51285 0.85103 0.78334 0.79068 0.77291 1.18351 1.22218 1.21898 1.21585 0.84614 0.98236 0.95645 1.22741 0.96060 0.96337 0.87729 1.20287 0.92728 0.97025 1.04858 0.91546 0.91278 0.91630 0.91489 0.91586 0.90403 0.90374 0.81824 0.80893 0.83563 0.90595 0.90809 0.90810 0.99477 0.94051 0.97523 0.89688 0.89455 0.87002 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.91 71.99 0.71 -0.32 16 2 C -0.13 -1.48 6.30 30.60 0.19 -1.29 16 3 C 0.05 0.66 4.74 71.98 0.34 1.00 16 4 O -0.34 -7.62 10.13 -92.60 -0.94 -8.56 16 5 C 0.12 2.84 6.68 22.47 0.15 2.99 16 6 C -0.18 -2.93 9.03 22.42 0.20 -2.73 16 7 C -0.07 -1.05 10.03 22.22 0.22 -0.83 16 8 C -0.12 -2.67 7.42 22.54 0.17 -2.51 16 9 C -0.10 -2.91 4.98 -20.10 -0.10 -3.01 16 10 C 0.55 21.01 7.27 86.79 0.63 21.64 16 11 O -0.59 -27.05 16.40 -3.89 -0.06 -27.12 16 12 N -0.59 -22.18 2.95 -820.56 -2.42 -24.60 16 13 C 0.10 4.22 6.60 86.41 0.57 4.79 16 14 C 0.17 8.65 5.45 86.41 0.47 9.12 16 15 N -0.61 -30.22 2.95 -697.37 -2.06 -32.28 16 16 C -0.26 -13.79 9.57 84.03 0.80 -12.98 16 17 H 0.08 3.88 7.85 -2.91 -0.02 3.85 16 18 C -0.05 -2.89 5.05 84.86 0.43 -2.46 16 19 N -0.94 -55.94 11.06 21.65 0.24 -55.70 16 20 Si 0.97 43.98 29.57 68.60 2.03 46.01 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 24 C 0.13 4.98 6.70 86.56 0.58 5.56 16 25 C 0.09 2.96 5.27 86.57 0.46 3.42 16 26 C -0.13 -3.90 9.62 22.63 0.22 -3.68 16 27 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.80 7.65 -2.39 -0.02 0.78 16 33 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 34 H 0.16 1.50 6.28 -2.91 -0.02 1.49 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.15 2.72 6.99 -2.91 -0.02 2.70 16 37 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 38 H 0.07 3.20 6.99 -2.39 -0.02 3.18 16 39 H 0.07 4.13 6.06 -2.39 -0.01 4.11 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.08 3.05 7.93 -2.39 -0.02 3.03 16 44 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.11 2.85 4.88 -2.38 -0.01 2.84 16 46 H 0.11 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -73.65 369.01 3.81 -69.84 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.97 Total: 13.68 kcal Atomic # 6 Polarization: 12.67 SS G_CDS: 6.05 Total: 18.72 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.24 Total: -112.57 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.00 Total: -35.67 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -73.65 3.81 -69.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071138089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.402 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds