Wall clock time and date at job start Tue Mar 31 2020 14:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 O 1.42900 * 109.47003 * 240.00180 * 2 1 3 5 5 C 1.35503 * 116.99660 * 210.00133 * 4 2 1 6 6 C 1.39162 * 119.50881 * 179.72470 * 5 4 2 7 7 C 1.36962 * 119.39697 * 179.76543 * 6 5 4 8 8 C 1.40315 * 118.46462 * 0.49935 * 7 6 5 9 9 C 1.47518 * 120.49683 * 179.76873 * 8 7 6 10 10 O 1.21612 * 119.99865 * 209.93229 * 9 8 7 11 11 N 1.34780 * 119.99886 * 29.93180 * 9 8 7 12 12 C 1.36900 * 119.99894 * 5.96434 * 11 9 8 13 13 H 1.07999 * 120.00162 * 234.56335 * 12 11 9 14 14 C 1.39029 * 120.00254 * 54.57073 * 12 11 9 15 15 N 1.31382 * 119.99907 * 7.26638 * 14 12 11 16 16 Si 1.86802 * 119.99910 * 187.27187 * 14 12 11 17 17 H 1.48501 * 109.47038 * 89.99755 * 16 14 12 18 18 H 1.48499 * 109.47107 * 209.99625 * 16 14 12 19 19 H 1.48497 * 109.47127 * 329.99763 * 16 14 12 20 20 C 1.46497 * 120.00007 * 185.95874 * 11 9 8 21 21 C 1.54264 * 110.03619 * 233.47735 * 20 11 9 22 22 C 1.54963 * 104.16227 * 217.13779 * 21 20 11 23 23 C 1.54888 * 102.77538 * 37.88412 * 22 21 20 24 24 C 1.53872 * 110.03268 * 116.25831 * 20 11 9 25 25 C 1.39599 * 119.00498 * 359.74366 * 8 7 6 26 26 N 1.31697 * 120.49016 * 0.02562 * 25 8 7 27 27 H 1.09002 * 109.47216 * 59.99770 * 1 2 3 28 28 H 1.08996 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46863 * 300.00088 * 1 2 3 30 30 H 1.08997 * 109.46912 * 119.99863 * 2 1 3 31 31 H 1.09004 * 109.46933 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47182 * 299.99698 * 3 2 1 33 33 H 1.09002 * 109.46878 * 60.00140 * 3 2 1 34 34 H 1.07998 * 120.30259 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.76085 * 180.22337 * 7 6 5 36 36 H 0.96996 * 119.99515 * 184.98777 * 15 14 12 37 37 H 1.09001 * 110.01727 * 354.87094 * 20 11 9 38 38 H 1.09005 * 110.48296 * 335.78815 * 21 20 11 39 39 H 1.09004 * 110.48441 * 98.42648 * 21 20 11 40 40 H 1.09002 * 110.71505 * 279.57191 * 22 21 20 41 41 H 1.08999 * 110.92340 * 156.29899 * 22 21 20 42 42 H 1.09000 * 110.48453 * 203.40353 * 23 22 21 43 43 H 1.09001 * 110.59683 * 80.81997 * 23 22 21 44 44 H 1.08998 * 110.03595 * 238.57651 * 24 20 11 45 45 H 1.09008 * 110.02963 * 359.95519 * 24 20 11 46 46 H 1.07998 * 119.76167 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.1972 -1.3121 -1.0654 6 6 3.7076 -1.9900 -2.1684 7 6 4.9138 -2.6305 -2.0647 8 6 5.5904 -2.5877 -0.8362 9 6 6.8900 -3.2664 -0.6733 10 8 7.2151 -3.7044 0.4137 11 7 7.7170 -3.4010 -1.7290 12 6 7.4080 -2.8031 -2.9211 13 1 7.3635 -3.3923 -3.8252 14 6 7.1517 -1.4375 -2.9681 15 7 7.3443 -0.6959 -1.9009 16 14 6.5333 -0.6571 -4.5487 17 1 5.0487 -0.6845 -4.5663 18 1 7.0034 0.7496 -4.6231 19 1 7.0563 -1.4160 -5.7130 20 6 8.9466 -4.1870 -1.6007 21 6 10.1603 -3.3465 -2.0481 22 6 11.0808 -4.3636 -2.7689 23 6 10.0710 -5.2705 -3.5151 24 6 8.8900 -5.4101 -2.5326 25 6 5.0155 -1.8927 0.2293 26 7 3.8552 -1.2869 0.0836 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1593 -2.0079 -3.0986 35 1 5.3322 -3.1601 -2.9078 36 1 7.0975 0.2421 -1.9112 37 1 9.0766 -4.5104 -0.5679 38 1 9.8474 -2.5610 -2.7361 39 1 10.6671 -2.9180 -1.1834 40 1 11.6578 -4.9407 -2.0464 41 1 11.7414 -3.8590 -3.4739 42 1 10.5134 -6.2452 -3.7208 43 1 9.7431 -4.7983 -4.4412 44 1 8.9934 -6.3269 -1.9523 45 1 7.9472 -5.4192 -3.0798 46 1 5.5255 -1.8523 1.1804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078209203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:13 Heat of formation + Delta-G solvation = -42.525929 kcal Electronic energy + Delta-G solvation = -27980.565156 eV Core-core repulsion = 24256.375463 eV Total energy + Delta-G solvation = -3724.189694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.15596 -39.01907 -37.59357 -36.40396 -34.36297 -32.98815 -31.67790 -31.38953 -29.52193 -28.00226 -27.20523 -26.98539 -25.06083 -23.30767 -23.11644 -20.74434 -20.15235 -19.94481 -19.37220 -17.99308 -17.13852 -16.17960 -15.76742 -15.32258 -15.24055 -14.62108 -14.55351 -14.22391 -14.14313 -13.84769 -13.47681 -13.19564 -12.97680 -12.68507 -12.64671 -12.35108 -12.23898 -12.11260 -11.86781 -11.70359 -11.42540 -11.21140 -11.11266 -10.98471 -10.70700 -10.65878 -10.54964 -10.46208 -10.41563 -10.40489 -10.04737 -9.71047 -9.31015 -9.05200 -8.74927 -8.45323 -7.67174 -7.27844 -6.43929 -4.30209 1.78605 2.10498 3.08086 3.15056 3.18577 3.45256 3.93328 4.07189 4.60374 4.82436 4.91319 4.99488 5.03579 5.11722 5.31467 5.35073 5.36904 5.51418 5.58017 5.64323 5.78674 5.83845 5.91510 5.93710 5.95427 6.03957 6.18529 6.20049 6.24198 6.27073 6.30569 6.33884 6.39254 6.45332 6.48584 6.52468 6.67275 6.78886 6.88736 7.05759 7.11652 7.20965 7.24708 7.36075 7.83753 7.89832 8.53146 8.56756 8.85354 9.49159 9.92541 10.58570 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.004311 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.444590 B = 6493.543992 C = 7177.401803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 C -0.167 4.167 4 O -0.308 6.308 5 C 0.314 3.686 6 C -0.215 4.215 7 C 0.012 3.988 8 C -0.137 4.137 9 C 0.565 3.435 10 O -0.604 6.604 11 N -0.442 5.442 12 C -0.348 4.348 13 H 0.084 0.916 14 C 0.060 3.940 15 N -0.845 5.845 16 Si 0.891 3.109 17 H -0.265 1.265 18 H -0.283 1.283 19 H -0.266 1.266 20 C 0.135 3.865 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.128 4.128 25 C 0.174 3.826 26 N -0.553 5.553 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.128 0.872 35 H 0.162 0.838 36 H 0.271 0.729 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -0.940 -1.596 5.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.025 3.975 3 C -0.225 4.225 4 O -0.217 6.217 5 C 0.135 3.865 6 C -0.236 4.236 7 C -0.013 4.013 8 C -0.142 4.142 9 C 0.355 3.645 10 O -0.490 6.490 11 N -0.161 5.161 12 C -0.476 4.476 13 H 0.102 0.898 14 C -0.150 4.150 15 N -0.478 5.478 16 Si 0.716 3.284 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.191 1.191 20 C 0.030 3.970 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.166 4.166 25 C 0.019 3.981 26 N -0.277 5.277 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.146 0.854 35 H 0.179 0.821 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.571 -0.460 -0.534 5.615 hybrid contribution 0.233 0.575 -1.398 1.529 sum -5.337 0.115 -1.932 5.677 Atomic orbital electron populations 1.21886 0.93556 1.02648 1.02461 1.22211 0.93797 0.92732 0.88804 1.22196 1.02564 0.95857 1.01847 1.86205 1.32607 1.64787 1.38077 1.19884 0.85695 0.90452 0.90463 1.20714 0.98899 1.05537 0.98443 1.21884 0.89665 0.92574 0.97167 1.20450 0.96694 1.02509 0.94572 1.17907 0.83566 0.79001 0.84051 1.90597 1.77251 1.54508 1.26685 1.43138 1.16367 1.46026 1.10615 1.19037 1.51060 0.90297 0.87174 0.89831 1.25602 0.95599 0.96476 0.97330 1.69822 1.41417 1.07666 1.28855 0.86485 0.80127 0.79135 0.82630 1.18975 1.20800 1.19074 1.21578 0.86044 0.90743 0.98601 1.22565 0.94689 0.98452 1.00085 1.22453 0.97281 0.97624 0.98735 1.22253 0.95997 0.98479 0.98671 1.22434 0.98903 0.97670 0.97607 1.22257 0.88412 0.89252 0.98181 1.67193 1.11263 1.24946 1.24294 0.91972 0.92024 0.90926 0.89341 0.91731 0.92419 0.91608 0.85377 0.82053 0.91858 0.90303 0.89276 0.93021 0.92506 0.92426 0.92953 0.91704 0.92830 0.91187 0.82880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.56 37.16 0.36 -1.29 16 2 C 0.08 1.18 3.10 -26.73 -0.08 1.10 16 3 C -0.17 -2.28 9.53 37.16 0.35 -1.93 16 4 O -0.31 -5.48 9.75 -18.20 -0.18 -5.66 16 5 C 0.31 6.24 7.46 -16.95 -0.13 6.11 16 6 C -0.22 -4.23 9.97 -39.70 -0.40 -4.63 16 7 C 0.01 0.26 6.63 -39.26 -0.26 0.00 16 8 C -0.14 -3.14 4.00 -104.83 -0.42 -3.56 16 9 C 0.56 14.02 6.70 -12.48 -0.08 13.94 16 10 O -0.60 -16.22 16.09 5.27 0.08 -16.14 16 11 N -0.44 -10.26 2.34 -107.72 -0.25 -10.51 16 12 C -0.35 -7.88 4.42 -15.00 -0.07 -7.95 16 13 H 0.08 1.84 7.43 -52.49 -0.39 1.45 16 14 C 0.06 1.40 3.21 -17.45 -0.06 1.34 16 15 N -0.84 -21.42 11.70 55.50 0.65 -20.77 16 16 Si 0.89 18.55 28.84 -169.99 -4.90 13.65 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 C 0.13 2.80 3.29 -66.82 -0.22 2.58 16 21 C -0.12 -2.32 6.40 -25.03 -0.16 -2.49 16 22 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 23 C -0.12 -1.77 6.83 -25.08 -0.17 -1.94 16 24 C -0.13 -2.23 6.30 -25.62 -0.16 -2.39 16 25 C 0.17 3.83 10.77 -17.10 -0.18 3.64 16 26 N -0.55 -11.36 8.62 -12.93 -0.11 -11.47 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.38 6.97 -51.93 -0.36 1.02 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 35 H 0.16 3.30 5.64 -52.49 -0.30 3.00 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.08 1.76 6.96 -51.93 -0.36 1.40 16 38 H 0.09 1.95 6.86 -51.93 -0.36 1.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.27 7.22 -51.92 -0.38 0.90 16 46 H 0.15 3.32 7.93 -52.49 -0.42 2.90 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -27.24 366.83 -8.22 -35.45 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.19 Total: 9.45 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.85 Total: 0.47 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.29 Total: -42.75 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.09 Total: -21.80 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.90 Total: 13.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.24 -8.22 -35.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.073 kcal (2) G-P(sol) polarization free energy of solvation -27.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds