Wall clock time and date at job start Tue Mar 31 2020 14:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46988 * 2 1 4 4 O 1.42900 * 109.47003 * 240.00180 * 2 1 3 5 5 C 1.35503 * 116.99660 * 210.00133 * 4 2 1 6 6 C 1.39162 * 119.50881 * 179.72470 * 5 4 2 7 7 C 1.36962 * 119.39697 * 179.76543 * 6 5 4 8 8 C 1.40315 * 118.46462 * 0.49935 * 7 6 5 9 9 C 1.47518 * 120.49683 * 179.76873 * 8 7 6 10 10 O 1.21612 * 119.99865 * 209.93229 * 9 8 7 11 11 N 1.34780 * 119.99886 * 29.93180 * 9 8 7 12 12 C 1.36900 * 119.99894 * 5.96434 * 11 9 8 13 13 H 1.07999 * 120.00162 * 234.56335 * 12 11 9 14 14 C 1.39029 * 120.00254 * 54.57073 * 12 11 9 15 15 N 1.31382 * 119.99907 * 7.26638 * 14 12 11 16 16 Si 1.86802 * 119.99910 * 187.27187 * 14 12 11 17 17 H 1.48501 * 109.47038 * 89.99755 * 16 14 12 18 18 H 1.48499 * 109.47107 * 209.99625 * 16 14 12 19 19 H 1.48497 * 109.47127 * 329.99763 * 16 14 12 20 20 C 1.46497 * 120.00007 * 185.95874 * 11 9 8 21 21 C 1.54264 * 110.03619 * 233.47735 * 20 11 9 22 22 C 1.54963 * 104.16227 * 217.13779 * 21 20 11 23 23 C 1.54888 * 102.77538 * 37.88412 * 22 21 20 24 24 C 1.53872 * 110.03268 * 116.25831 * 20 11 9 25 25 C 1.39599 * 119.00498 * 359.74366 * 8 7 6 26 26 N 1.31697 * 120.49016 * 0.02562 * 25 8 7 27 27 H 1.09002 * 109.47216 * 59.99770 * 1 2 3 28 28 H 1.08996 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46863 * 300.00088 * 1 2 3 30 30 H 1.08997 * 109.46912 * 119.99863 * 2 1 3 31 31 H 1.09004 * 109.46933 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47182 * 299.99698 * 3 2 1 33 33 H 1.09002 * 109.46878 * 60.00140 * 3 2 1 34 34 H 1.07998 * 120.30259 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.76085 * 180.22337 * 7 6 5 36 36 H 0.96996 * 119.99515 * 184.98777 * 15 14 12 37 37 H 1.09001 * 110.01727 * 354.87094 * 20 11 9 38 38 H 1.09005 * 110.48296 * 335.78815 * 21 20 11 39 39 H 1.09004 * 110.48441 * 98.42648 * 21 20 11 40 40 H 1.09002 * 110.71505 * 279.57191 * 22 21 20 41 41 H 1.08999 * 110.92340 * 156.29899 * 22 21 20 42 42 H 1.09000 * 110.48453 * 203.40353 * 23 22 21 43 43 H 1.09001 * 110.59683 * 80.81997 * 23 22 21 44 44 H 1.08998 * 110.03595 * 238.57651 * 24 20 11 45 45 H 1.09008 * 110.02963 * 359.95519 * 24 20 11 46 46 H 1.07998 * 119.76167 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.1972 -1.3121 -1.0654 6 6 3.7076 -1.9900 -2.1684 7 6 4.9138 -2.6305 -2.0647 8 6 5.5904 -2.5877 -0.8362 9 6 6.8900 -3.2664 -0.6733 10 8 7.2151 -3.7044 0.4137 11 7 7.7170 -3.4010 -1.7290 12 6 7.4080 -2.8031 -2.9211 13 1 7.3635 -3.3923 -3.8252 14 6 7.1517 -1.4375 -2.9681 15 7 7.3443 -0.6959 -1.9009 16 14 6.5333 -0.6571 -4.5487 17 1 5.0487 -0.6845 -4.5663 18 1 7.0034 0.7496 -4.6231 19 1 7.0563 -1.4160 -5.7130 20 6 8.9466 -4.1870 -1.6007 21 6 10.1603 -3.3465 -2.0481 22 6 11.0808 -4.3636 -2.7689 23 6 10.0710 -5.2705 -3.5151 24 6 8.8900 -5.4101 -2.5326 25 6 5.0155 -1.8927 0.2293 26 7 3.8552 -1.2869 0.0836 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1593 -2.0079 -3.0986 35 1 5.3322 -3.1601 -2.9078 36 1 7.0975 0.2421 -1.9112 37 1 9.0766 -4.5104 -0.5679 38 1 9.8474 -2.5610 -2.7361 39 1 10.6671 -2.9180 -1.1834 40 1 11.6578 -4.9407 -2.0464 41 1 11.7414 -3.8590 -3.4739 42 1 10.5134 -6.2452 -3.7208 43 1 9.7431 -4.7983 -4.4412 44 1 8.9934 -6.3269 -1.9523 45 1 7.9472 -5.4192 -3.0798 46 1 5.5255 -1.8523 1.1804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078209203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:12 Heat of formation + Delta-G solvation = -57.404577 kcal Electronic energy + Delta-G solvation = -27981.210343 eV Core-core repulsion = 24256.375463 eV Total energy + Delta-G solvation = -3724.834880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.76797 -40.67031 -39.06559 -38.07149 -36.13944 -34.19447 -33.33904 -33.16346 -31.13468 -29.43667 -28.58696 -28.15879 -26.87382 -24.83797 -24.76356 -22.03593 -21.81721 -21.36149 -21.04159 -19.44751 -18.86239 -17.78660 -17.42800 -17.04567 -16.65110 -16.35292 -15.99416 -15.74604 -15.51597 -15.35571 -15.06738 -14.72729 -14.47727 -14.27095 -14.06623 -13.83629 -13.57946 -13.26955 -13.20968 -13.11258 -13.00217 -12.88916 -12.66906 -12.54744 -12.26028 -12.11159 -11.87709 -11.85450 -11.80276 -11.68348 -11.40221 -11.29128 -11.00969 -10.76952 -10.47310 -10.24706 -9.39677 -9.05078 -8.26213 -6.16286 0.10741 0.45059 1.42731 1.46759 1.53139 2.07742 2.15289 2.32532 2.88102 3.05551 3.26969 3.36953 3.89419 3.93010 3.94200 4.04624 4.13411 4.19144 4.24590 4.26625 4.32635 4.47065 4.64211 4.68567 4.73286 4.81499 4.82619 4.82911 4.85721 4.87644 4.92802 4.95058 5.10471 5.13491 5.18817 5.22431 5.26944 5.28433 5.41031 5.46309 5.53291 5.54374 5.63142 5.65127 6.09073 6.33569 6.70194 6.89442 7.03322 7.61829 8.07997 8.75713 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019638 B = 0.004311 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.444590 B = 6493.543992 C = 7177.401803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 C -0.163 4.163 4 O -0.310 6.310 5 C 0.315 3.685 6 C -0.214 4.214 7 C 0.014 3.986 8 C -0.156 4.156 9 C 0.547 3.453 10 O -0.641 6.641 11 N -0.443 5.443 12 C -0.342 4.342 13 H 0.097 0.903 14 C 0.032 3.968 15 N -0.878 5.878 16 Si 0.938 3.062 17 H -0.255 1.255 18 H -0.298 1.298 19 H -0.250 1.250 20 C 0.122 3.878 21 C -0.117 4.117 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.121 4.121 25 C 0.165 3.835 26 N -0.552 5.552 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.263 0.737 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.288 -1.241 -3.708 7.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.014 3.986 3 C -0.220 4.220 4 O -0.218 6.218 5 C 0.135 3.865 6 C -0.234 4.234 7 C -0.012 4.012 8 C -0.162 4.162 9 C 0.338 3.662 10 O -0.530 6.530 11 N -0.161 5.161 12 C -0.469 4.469 13 H 0.114 0.886 14 C -0.175 4.175 15 N -0.513 5.513 16 Si 0.762 3.238 17 H -0.179 1.179 18 H -0.224 1.224 19 H -0.173 1.173 20 C 0.018 3.982 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.160 4.160 25 C 0.010 3.990 26 N -0.277 5.277 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.173 0.827 35 H 0.184 0.816 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.601 -0.780 -2.681 7.167 hybrid contribution 0.510 0.710 -0.673 1.103 sum -6.090 -0.070 -3.354 6.953 Atomic orbital electron populations 1.21883 0.90354 1.03299 1.04172 1.22583 0.96197 0.92667 0.87162 1.22175 1.00514 0.95657 1.03662 1.86218 1.31303 1.64558 1.39676 1.20112 0.86183 0.90058 0.90158 1.20976 0.98418 1.04585 0.99427 1.21882 0.90111 0.92714 0.96456 1.20408 0.96414 1.03551 0.95794 1.18354 0.84551 0.79219 0.84054 1.90547 1.78219 1.56292 1.27938 1.43358 1.16712 1.45561 1.10483 1.19259 1.50277 0.90327 0.87081 0.88605 1.26147 0.95458 0.96689 0.99169 1.69966 1.43020 1.07398 1.30867 0.85745 0.80178 0.77554 0.80353 1.17938 1.22441 1.17338 1.21824 0.85760 0.92243 0.98365 1.22476 0.95062 0.98650 0.99334 1.22421 0.96905 0.96625 0.99028 1.22229 0.94666 1.00030 0.97605 1.22368 0.99823 0.96290 0.97471 1.22175 0.89080 0.89868 0.97922 1.67207 1.10715 1.24733 1.25006 0.91152 0.91943 0.88289 0.90712 0.94813 0.91553 0.88880 0.82709 0.81616 0.92698 0.92771 0.91820 0.94453 0.90862 0.90637 0.89761 0.91779 0.91504 0.91958 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.56 71.98 0.69 -2.03 16 2 C 0.07 1.94 3.10 30.60 0.09 2.03 16 3 C -0.16 -4.20 9.53 71.98 0.69 -3.51 16 4 O -0.31 -10.55 9.75 -88.05 -0.86 -11.41 16 5 C 0.31 12.31 7.46 84.82 0.63 12.95 16 6 C -0.21 -8.15 9.97 22.19 0.22 -7.92 16 7 C 0.01 0.57 6.63 22.48 0.15 0.71 16 8 C -0.16 -7.38 4.00 -20.00 -0.08 -7.46 16 9 C 0.55 28.34 6.70 86.69 0.58 28.92 16 10 O -0.64 -36.36 16.09 -4.07 -0.07 -36.42 16 11 N -0.44 -21.08 2.34 -612.97 -1.44 -22.52 16 12 C -0.34 -15.47 4.42 84.09 0.37 -15.10 16 13 H 0.10 4.08 7.43 -2.91 -0.02 4.06 16 14 C 0.03 1.49 3.21 84.95 0.27 1.76 16 15 N -0.88 -45.71 11.70 21.68 0.25 -45.46 16 16 Si 0.94 37.17 28.84 68.60 1.98 39.15 16 17 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.30 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 20 C 0.12 5.16 3.29 45.71 0.15 5.31 16 21 C -0.12 -4.58 6.40 31.69 0.20 -4.37 16 22 C -0.11 -3.22 6.91 31.91 0.22 -3.00 16 23 C -0.11 -2.96 6.83 31.67 0.22 -2.74 16 24 C -0.12 -4.08 6.30 31.32 0.20 -3.88 16 25 C 0.16 7.56 10.77 85.04 0.92 8.47 16 26 N -0.55 -23.09 8.62 -307.70 -2.65 -25.74 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 2.29 6.97 -2.39 -0.02 2.27 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.16 5.01 8.06 -2.91 -0.02 4.99 16 35 H 0.17 6.66 5.64 -2.91 -0.02 6.64 16 36 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 37 H 0.05 2.53 6.96 -2.39 -0.02 2.52 16 38 H 0.06 2.82 6.86 -2.38 -0.02 2.80 16 39 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.19 7.22 -2.38 -0.02 2.17 16 46 H 0.14 6.71 7.93 -2.91 -0.02 6.68 16 Total: -1.00 -61.04 366.83 3.71 -57.33 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.97 Total: 34.94 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.52 Total: 10.13 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -3.83 Total: -93.72 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -0.92 Total: -47.83 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 1.98 Total: 39.15 kcal Total: -61.04 3.71 -57.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.071 kcal (2) G-P(sol) polarization free energy of solvation -61.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds