Wall clock time and date at job start Tue Mar 31 2020 14:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47150 * 2 1 4 4 O 1.21274 * 119.99930 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99752 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.62939 * 179.97438 * 5 3 2 7 7 C 1.53190 * 108.89280 * 126.45924 * 6 5 3 8 8 C 1.53042 * 109.31404 * 54.56435 * 7 6 5 9 9 N 1.46503 * 109.45707 * 178.61118 * 8 7 6 10 10 C 1.39788 * 119.99820 * 204.99637 * 9 8 7 11 11 C 1.38947 * 120.00383 * 359.73311 * 10 9 8 12 12 C 1.38014 * 119.99365 * 179.72029 * 11 10 9 13 13 C 1.38897 * 120.00023 * 0.54931 * 12 11 10 14 14 O 1.35797 * 119.99137 * 179.70602 * 13 12 11 15 15 C 1.34812 * 117.00346 * 174.48483 * 14 13 12 16 16 H 1.08004 * 119.99931 * 5.04733 * 15 14 13 17 17 C 1.38619 * 120.00576 * 185.05333 * 15 14 13 18 18 N 1.31581 * 119.99590 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00250 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47059 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.46985 * 120.00135 * 19 17 15 22 22 H 1.48504 * 109.47010 * 240.00217 * 19 17 15 23 23 C 1.38905 * 120.01669 * 359.72460 * 13 12 11 24 24 C 1.38005 * 120.00035 * 0.02562 * 23 13 12 25 25 C 1.53033 * 109.53759 * 298.63523 * 8 7 6 26 26 C 1.46967 * 120.65684 * 359.81050 * 5 3 2 27 27 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47170 * 299.99900 * 1 2 3 29 29 H 1.08995 * 109.47522 * 60.00033 * 1 2 3 30 30 H 1.09002 * 109.46739 * 239.99460 * 2 1 3 31 31 H 1.09003 * 109.47248 * 119.99923 * 2 1 3 32 32 H 1.09000 * 109.58344 * 6.59986 * 6 5 3 33 33 H 1.09001 * 109.58692 * 246.31664 * 6 5 3 34 34 H 1.09006 * 109.49467 * 174.51523 * 7 6 5 35 35 H 1.08998 * 109.49728 * 294.60972 * 7 6 5 36 36 H 1.09001 * 109.45848 * 58.64263 * 8 7 6 37 37 H 0.96997 * 120.00246 * 25.00264 * 9 8 7 38 38 H 1.08006 * 120.00854 * 359.97438 * 11 10 9 39 39 H 1.07997 * 119.99903 * 180.25457 * 12 11 10 40 40 H 0.97002 * 119.99980 * 180.02562 * 18 17 15 41 41 H 1.07996 * 119.99858 * 179.97438 * 23 13 12 42 42 H 1.08005 * 119.99858 * 179.97438 * 24 23 13 43 43 H 1.09001 * 109.50197 * 181.31822 * 25 8 7 44 44 H 1.09005 * 109.49665 * 301.37673 * 25 8 7 45 45 H 1.09000 * 109.46164 * 113.75666 * 26 5 3 46 46 H 1.09000 * 109.70903 * 353.47638 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6670 -0.0005 6 6 3.8623 3.0468 -0.0011 7 6 4.8421 3.2169 1.1642 8 6 5.9334 2.1483 1.0681 9 7 6.8907 2.3286 2.1624 10 6 8.2027 1.8656 2.0266 11 6 8.5973 1.2294 0.8561 12 6 9.8943 0.7775 0.7200 13 6 10.8018 0.9485 1.7576 14 8 12.0762 0.4985 1.6258 15 6 12.9364 0.7962 2.6203 16 1 12.5819 1.2971 3.5090 17 6 14.2758 0.4594 2.5022 18 7 14.7079 -0.1504 1.4192 19 14 15.4677 0.8726 3.8799 20 1 14.7371 1.5530 4.9791 21 1 16.0823 -0.3776 4.3942 22 1 16.5312 1.7702 3.3617 23 6 10.4059 1.5794 2.9301 24 6 9.1105 2.0360 3.0645 25 6 5.2996 0.7590 1.1688 26 6 4.3251 0.5609 0.0031 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.0300 3.7405 0.1170 33 1 4.3750 3.2479 -0.9418 34 1 5.2966 4.2065 1.1159 35 1 4.3076 3.1072 2.1078 36 1 6.4510 2.2427 0.1135 37 1 6.6141 2.7692 2.9811 38 1 7.8904 1.0921 0.0511 39 1 10.2023 0.2867 -0.1913 40 1 15.6451 -0.3864 1.3367 41 1 11.1116 1.7119 3.7367 42 1 8.8027 2.5262 3.9763 43 1 6.0797 -0.0010 1.1238 44 1 4.7613 0.6722 2.1127 45 1 4.8760 0.5573 -0.9374 46 1 3.7998 -0.3867 0.1225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089155219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:27 Heat of formation + Delta-G solvation = -37.884910 kcal Electronic energy + Delta-G solvation = -25968.658812 eV Core-core repulsion = 22244.670368 eV Total energy + Delta-G solvation = -3723.988444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.57152 -39.16720 -38.10730 -36.63299 -34.52565 -33.32672 -32.19202 -31.33892 -31.16457 -30.11593 -27.40786 -25.70197 -24.98781 -24.13959 -23.11676 -22.21516 -20.99237 -20.50423 -19.18914 -17.90325 -17.54669 -17.14080 -16.38757 -16.13674 -15.93597 -15.49238 -14.60306 -14.51703 -14.42386 -14.20027 -14.01933 -13.86528 -13.49075 -13.36164 -13.02391 -12.87391 -12.65221 -12.47095 -12.43482 -12.20415 -12.07550 -11.91772 -11.58138 -11.54362 -11.49309 -11.27471 -11.14862 -10.88761 -10.76174 -10.53963 -10.36496 -10.04821 -9.25771 -9.22258 -8.99141 -8.47715 -8.20458 -6.43897 -6.34579 -3.91798 2.16852 2.33513 2.53554 2.66131 3.16457 3.18003 3.23114 3.69149 4.04122 4.15555 4.42745 4.56161 4.66476 4.68336 4.72339 4.76287 4.87382 4.97354 5.08693 5.15975 5.18647 5.28458 5.34559 5.42172 5.44989 5.50591 5.57933 5.60163 5.62724 5.68748 5.73628 5.84114 5.87855 6.02689 6.19337 6.20879 6.24347 6.50959 6.83152 6.88042 7.06569 7.10132 7.30417 7.42252 7.61261 7.87495 7.94093 8.09892 8.19792 9.11553 9.85675 10.84172 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036997 B = 0.002103 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.643496 B =13308.500062 C =13616.799063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.514 3.486 4 O -0.545 6.545 5 N -0.614 5.614 6 C 0.114 3.886 7 C -0.140 4.140 8 C 0.162 3.838 9 N -0.755 5.755 10 C 0.124 3.876 11 C -0.146 4.146 12 C -0.151 4.151 13 C 0.114 3.886 14 O -0.188 6.188 15 C -0.386 4.386 16 H 0.089 0.911 17 C 0.035 3.965 18 N -0.868 5.868 19 Si 0.938 3.062 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.190 4.190 24 C -0.141 4.141 25 C -0.152 4.152 26 C 0.107 3.893 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.390 0.610 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.267 0.733 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.960 1.599 -1.805 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.185 4.185 3 C 0.303 3.697 4 O -0.423 6.423 5 N -0.348 5.348 6 C -0.009 4.009 7 C -0.179 4.179 8 C 0.055 3.945 9 N -0.389 5.389 10 C 0.026 3.974 11 C -0.168 4.168 12 C -0.171 4.171 13 C 0.061 3.939 14 O -0.093 6.093 15 C -0.463 4.463 16 H 0.106 0.894 17 C -0.167 4.167 18 N -0.505 5.505 19 Si 0.763 3.237 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.210 4.210 24 C -0.164 4.164 25 C -0.192 4.192 26 C -0.016 4.016 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.223 0.777 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.087 1.822 -2.237 23.266 hybrid contribution 0.717 0.315 1.149 1.391 sum -22.369 2.138 -1.089 22.497 Atomic orbital electron populations 1.21536 0.93025 1.01604 1.03296 1.21674 0.98583 0.93916 1.04310 1.20809 0.81585 0.91946 0.75402 1.90683 1.54836 1.46680 1.50084 1.48220 1.05680 1.07448 1.73407 1.21543 0.97872 0.83246 0.98198 1.22178 0.96533 0.99910 0.99254 1.20625 0.88925 0.92925 0.92015 1.44261 1.07891 1.68548 1.18216 1.17378 0.84565 1.00294 0.95147 1.20179 0.95814 1.04182 0.96639 1.20030 0.92413 1.06197 0.98446 1.19250 0.86937 0.94503 0.93205 1.83985 1.14513 1.66318 1.44516 1.21279 0.88320 1.39742 0.96966 0.89401 1.25221 0.96590 0.96882 0.98050 1.70057 1.15811 1.38271 1.26358 0.85695 0.79926 0.78328 0.79737 1.19268 1.20319 1.20302 1.20998 0.96146 1.04722 0.99106 1.20237 0.93362 1.05105 0.97659 1.22498 0.98856 0.99581 0.98304 1.21822 0.90861 0.89525 0.99411 0.92042 0.92046 0.92021 0.88858 0.88848 0.88773 0.91187 0.90011 0.91282 0.90516 0.77663 0.87137 0.86554 0.92342 0.85532 0.87689 0.89700 0.91410 0.90851 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.15 0.34 -0.60 16 2 C -0.14 -0.95 4.77 -27.89 -0.13 -1.08 16 3 C 0.51 5.06 7.70 -10.99 -0.08 4.98 16 4 O -0.55 -7.37 15.39 5.56 0.09 -7.29 16 5 N -0.61 -5.25 2.98 -172.72 -0.51 -5.77 16 6 C 0.11 0.98 6.43 -3.71 -0.02 0.96 16 7 C -0.14 -1.18 5.55 -26.61 -0.15 -1.32 16 8 C 0.16 1.58 2.11 -67.89 -0.14 1.44 16 9 N -0.75 -9.15 5.25 -52.08 -0.27 -9.43 16 10 C 0.12 1.99 6.64 -83.71 -0.56 1.44 16 11 C -0.15 -2.47 8.82 -39.40 -0.35 -2.81 16 12 C -0.15 -3.10 9.98 -39.42 -0.39 -3.49 16 13 C 0.11 2.72 6.65 -39.09 -0.26 2.46 16 14 O -0.19 -5.39 9.76 -0.05 0.00 -5.39 16 15 C -0.39 -10.87 9.48 30.87 0.29 -10.58 16 16 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 17 C 0.04 0.99 5.49 -17.52 -0.10 0.89 16 18 N -0.87 -25.76 13.67 55.48 0.76 -25.00 16 19 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.19 -4.07 9.16 -39.42 -0.36 -4.43 16 24 C -0.14 -2.52 9.89 -39.41 -0.39 -2.91 16 25 C -0.15 -1.33 5.58 -26.60 -0.15 -1.47 16 26 C 0.11 0.74 6.33 -3.67 -0.02 0.72 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.09 0.45 7.95 -51.93 -0.41 0.04 16 31 H 0.09 0.48 7.69 -51.93 -0.40 0.09 16 32 H 0.09 0.92 7.00 -51.93 -0.36 0.55 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.81 6.49 -51.93 -0.34 0.47 16 37 H 0.39 4.26 8.61 -40.82 -0.35 3.91 16 38 H 0.11 1.55 6.10 -52.48 -0.32 1.23 16 39 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 41 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.45 5.95 -51.93 -0.31 0.14 16 LS Contribution 369.51 15.07 5.57 5.57 Total: -1.00 -33.12 369.51 -8.69 -41.81 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.82 Total: 5.58 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.47 Total: -15.82 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.03 Total: -40.20 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.12 -8.69 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089155219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.925 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds