Wall clock time and date at job start Tue Mar 31 2020 14:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46856 * 2 1 4 4 O 1.42899 * 109.46961 * 180.02562 * 3 2 1 5 5 C 1.35899 * 116.99564 * 180.02562 * 4 3 2 6 6 C 1.38751 * 120.14964 * 359.97356 * 5 4 3 7 7 C 1.37910 * 119.81014 * 180.09637 * 6 5 4 8 8 C 1.38777 * 120.45885 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.81269 * 359.85301 * 8 7 6 10 10 C 1.38529 * 120.14377 * 179.97438 * 5 4 3 11 11 C 1.50727 * 121.65769 * 180.24166 * 9 8 7 12 12 C 1.52890 * 109.96889 * 343.07949 * 11 9 8 13 13 N 1.47163 * 108.50138 * 50.38853 * 12 11 9 14 14 C 1.46899 * 111.00233 * 52.11829 * 13 12 11 15 15 C 1.50698 * 109.46987 * 170.00045 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47403 * 120.00325 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00122 * 22 20 18 26 26 C 1.46629 * 110.23561 * 288.70629 * 13 12 11 27 27 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46730 * 300.00210 * 1 2 3 29 29 H 1.08993 * 109.46928 * 60.00426 * 1 2 3 30 30 H 1.08995 * 109.47299 * 239.99925 * 2 1 3 31 31 H 1.08994 * 109.47416 * 119.99380 * 2 1 3 32 32 H 1.08995 * 109.47228 * 59.99882 * 3 2 1 33 33 H 1.09003 * 109.46809 * 300.00039 * 3 2 1 34 34 H 1.07998 * 120.09432 * 0.07023 * 6 5 4 35 35 H 1.08001 * 119.77589 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.84164 * 359.95242 * 10 5 4 37 37 H 1.09006 * 109.38477 * 222.93244 * 11 9 8 38 38 H 1.08994 * 109.39156 * 103.23382 * 11 9 8 39 39 H 1.09007 * 109.63368 * 290.68317 * 12 11 9 40 40 H 1.09001 * 109.63653 * 170.09064 * 12 11 9 41 41 H 1.09003 * 109.46477 * 50.00534 * 14 13 12 42 42 H 1.08993 * 109.47002 * 290.00860 * 14 13 12 43 43 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.30239 * 172.90942 * 26 13 12 46 46 H 1.08994 * 109.30702 * 292.28211 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0859 2.6535 -0.0001 6 6 3.3331 3.8191 0.0003 7 6 3.9664 5.0442 -0.0012 8 6 5.3521 5.1199 -0.0038 9 6 6.1018 3.9627 -0.0017 10 6 5.4691 2.7296 -0.0001 11 6 7.6087 3.9964 0.0011 12 6 8.1007 5.3822 -0.4170 13 7 7.3997 6.3909 0.3935 14 6 7.5127 6.0863 1.8261 15 6 7.0028 7.2548 2.6297 16 8 6.5859 8.2437 2.0646 17 7 7.0092 7.2004 3.9764 18 6 6.5506 8.2656 4.7076 19 1 6.1801 9.1465 4.2044 20 6 6.5625 8.2119 6.0960 21 7 7.0138 7.1402 6.7082 22 14 5.9371 9.6629 7.0923 23 1 5.4862 10.7377 6.1720 24 1 4.7980 9.2274 7.9397 25 1 7.0292 10.1771 7.9572 26 6 5.9945 6.4825 -0.0151 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.2544 3.7671 0.0015 35 1 3.3799 5.9511 -0.0004 36 1 6.0572 1.8237 0.0003 37 1 7.9885 3.2514 -0.6982 38 1 7.9738 3.7697 1.0027 39 1 7.8832 5.5450 -1.4727 40 1 9.1746 5.4567 -0.2458 41 1 8.5572 5.9010 2.0768 42 1 6.9209 5.2006 2.0570 43 1 7.3423 6.4093 4.4283 44 1 7.0218 7.1025 7.6775 45 1 5.4610 7.1378 0.6735 46 1 5.9380 6.8992 -1.0207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134526175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:01 Heat of formation + Delta-G solvation = -51.954592 kcal Electronic energy + Delta-G solvation = -26530.394860 eV Core-core repulsion = 22805.796309 eV Total energy + Delta-G solvation = -3724.598551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66287 -39.31593 -37.83474 -36.15261 -34.15519 -33.87096 -32.56206 -31.22457 -30.35321 -29.31527 -27.74845 -26.53707 -24.66236 -23.97039 -22.75462 -22.22334 -21.54755 -19.96687 -18.76958 -17.85795 -17.56620 -16.50146 -16.35826 -16.28056 -15.40541 -15.05329 -14.87033 -14.61528 -14.36216 -14.13974 -14.00698 -13.98044 -13.63780 -13.12549 -13.05172 -12.81044 -12.70858 -12.32726 -12.22440 -12.16583 -11.78538 -11.71267 -11.49626 -11.39783 -11.21239 -11.19794 -11.04845 -10.88141 -10.60814 -10.46159 -10.31716 -10.18966 -9.45359 -8.74693 -8.40762 -7.98047 -7.93297 -7.81800 -6.38030 -3.78535 1.34463 1.47730 3.02741 3.18416 3.28639 3.35856 3.74610 3.95861 4.08521 4.30645 4.52048 4.53976 4.72355 4.84048 4.86958 4.98973 5.01743 5.07616 5.09871 5.15277 5.20481 5.26273 5.28948 5.34491 5.42619 5.57525 5.59837 5.70033 5.72606 5.76708 5.85895 5.91010 5.95364 6.01080 6.03206 6.12181 6.25706 6.33942 6.37624 6.43259 6.67652 6.85511 7.33589 7.38803 7.39802 7.58813 8.10731 8.66066 9.22085 9.59233 10.11007 10.79947 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.003185 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.881784 B = 8790.138236 C =10289.452821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.319 6.319 5 C 0.122 3.878 6 C -0.208 4.208 7 C -0.071 4.071 8 C -0.138 4.138 9 C -0.042 4.042 10 C -0.152 4.152 11 C -0.120 4.120 12 C 0.052 3.948 13 N -0.502 5.502 14 C 0.040 3.960 15 C 0.446 3.554 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.090 3.910 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.392 0.608 44 H 0.270 0.730 45 H 0.111 0.889 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.539 -14.160 -14.237 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.233 6.233 5 C 0.078 3.922 6 C -0.227 4.227 7 C -0.090 4.090 8 C -0.140 4.140 9 C -0.042 4.042 10 C -0.171 4.171 11 C -0.159 4.159 12 C -0.076 4.076 13 N -0.223 5.223 14 C -0.091 4.091 15 C 0.232 3.768 16 O -0.463 6.463 17 N -0.202 5.202 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.755 3.245 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.038 4.038 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.225 0.775 44 H 0.080 0.920 45 H 0.129 0.871 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.485 -13.228 -14.488 20.663 hybrid contribution -0.764 -0.634 1.126 1.501 sum -7.248 -13.862 -13.362 20.573 Atomic orbital electron populations 1.21695 0.94279 1.02479 1.02289 1.21480 0.96016 0.94937 1.03646 1.22845 0.78732 0.98642 1.01445 1.86014 1.21070 1.27219 1.88994 1.18819 0.92172 0.83908 0.97348 1.21142 0.99743 0.92424 1.09342 1.20911 0.93972 0.97154 0.96970 1.20545 0.93947 0.96884 1.02662 1.19324 0.95435 0.91570 0.97860 1.20261 0.91262 0.97894 1.07672 1.21190 0.91293 1.00310 1.03087 1.22294 0.99116 0.88001 0.98218 1.62241 1.12368 1.44974 1.02679 1.21920 1.01703 0.97108 0.88403 1.19753 0.85044 0.89122 0.82897 1.90480 1.51653 1.33971 1.70236 1.41875 1.56120 1.17936 1.04264 1.19739 1.38061 0.96533 0.88252 0.87886 1.25254 0.97636 0.98181 0.96966 1.69625 1.46846 1.27997 1.09918 0.85820 0.78270 0.80940 0.79430 1.19227 1.20836 1.20770 1.21274 0.88068 0.91816 1.02619 0.91756 0.92268 0.92385 0.90931 0.90808 0.92011 0.92183 0.85787 0.85608 0.85596 0.90199 0.89915 0.90402 0.89963 0.89435 0.92858 0.77536 0.91990 0.87120 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.93 6.30 -26.72 -0.17 -1.10 16 3 C 0.06 0.55 4.74 37.16 0.18 0.73 16 4 O -0.32 -4.05 10.14 -19.42 -0.20 -4.25 16 5 C 0.12 1.69 6.68 -39.28 -0.26 1.43 16 6 C -0.21 -2.77 9.04 -39.51 -0.36 -3.12 16 7 C -0.07 -1.03 9.64 -39.50 -0.38 -1.41 16 8 C -0.14 -2.12 5.19 -104.58 -0.54 -2.66 16 9 C -0.04 -0.59 5.05 -104.61 -0.53 -1.11 16 10 C -0.15 -2.09 9.59 -39.34 -0.38 -2.47 16 11 C -0.12 -1.45 5.16 -27.93 -0.14 -1.59 16 12 C 0.05 0.67 6.02 -3.74 -0.02 0.65 16 13 N -0.50 -8.49 4.74 -237.63 -1.13 -9.62 16 14 C 0.04 0.74 4.41 -4.98 -0.02 0.72 16 15 C 0.45 10.69 7.41 -10.99 -0.08 10.60 16 16 O -0.58 -15.60 14.05 5.55 0.08 -15.52 16 17 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.88 13.05 55.50 0.72 -24.15 16 22 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.09 1.51 5.18 -5.15 -0.03 1.48 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 33 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.12 1.37 6.32 -52.49 -0.33 1.04 16 35 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.00 7.06 -51.93 -0.37 0.64 16 39 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 42 H 0.05 0.96 5.91 -51.93 -0.31 0.66 16 43 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.11 2.21 5.84 -51.93 -0.30 1.91 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -31.91 368.88 -9.66 -41.57 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.00 Total: 11.19 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.61 Total: -6.37 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.46 Total: -48.40 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.12 Total: -19.78 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.91 -9.66 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134526175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.388 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds