Wall clock time and date at job start Tue Mar 31 2020 14:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46856 * 2 1 4 4 O 1.42899 * 109.46961 * 180.02562 * 3 2 1 5 5 C 1.35899 * 116.99564 * 180.02562 * 4 3 2 6 6 C 1.38751 * 120.14964 * 359.97356 * 5 4 3 7 7 C 1.37910 * 119.81014 * 180.09637 * 6 5 4 8 8 C 1.38777 * 120.45885 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.81269 * 359.85301 * 8 7 6 10 10 C 1.38529 * 120.14377 * 179.97438 * 5 4 3 11 11 C 1.50727 * 121.65769 * 180.24166 * 9 8 7 12 12 C 1.52890 * 109.96889 * 343.07949 * 11 9 8 13 13 N 1.47163 * 108.50138 * 50.38853 * 12 11 9 14 14 C 1.46899 * 111.00233 * 52.11829 * 13 12 11 15 15 C 1.50698 * 109.46987 * 170.00045 * 14 13 12 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47403 * 120.00325 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00122 * 22 20 18 26 26 C 1.46629 * 110.23561 * 288.70629 * 13 12 11 27 27 H 1.09003 * 109.46665 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46730 * 300.00210 * 1 2 3 29 29 H 1.08993 * 109.46928 * 60.00426 * 1 2 3 30 30 H 1.08995 * 109.47299 * 239.99925 * 2 1 3 31 31 H 1.08994 * 109.47416 * 119.99380 * 2 1 3 32 32 H 1.08995 * 109.47228 * 59.99882 * 3 2 1 33 33 H 1.09003 * 109.46809 * 300.00039 * 3 2 1 34 34 H 1.07998 * 120.09432 * 0.07023 * 6 5 4 35 35 H 1.08001 * 119.77589 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.84164 * 359.95242 * 10 5 4 37 37 H 1.09006 * 109.38477 * 222.93244 * 11 9 8 38 38 H 1.08994 * 109.39156 * 103.23382 * 11 9 8 39 39 H 1.09007 * 109.63368 * 290.68317 * 12 11 9 40 40 H 1.09001 * 109.63653 * 170.09064 * 12 11 9 41 41 H 1.09003 * 109.46477 * 50.00534 * 14 13 12 42 42 H 1.08993 * 109.47002 * 290.00860 * 14 13 12 43 43 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.30239 * 172.90942 * 26 13 12 46 46 H 1.08994 * 109.30702 * 292.28211 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0859 2.6535 -0.0001 6 6 3.3331 3.8191 0.0003 7 6 3.9664 5.0442 -0.0012 8 6 5.3521 5.1199 -0.0038 9 6 6.1018 3.9627 -0.0017 10 6 5.4691 2.7296 -0.0001 11 6 7.6087 3.9964 0.0011 12 6 8.1007 5.3822 -0.4170 13 7 7.3997 6.3909 0.3935 14 6 7.5127 6.0863 1.8261 15 6 7.0028 7.2548 2.6297 16 8 6.5859 8.2437 2.0646 17 7 7.0092 7.2004 3.9764 18 6 6.5506 8.2656 4.7076 19 1 6.1801 9.1465 4.2044 20 6 6.5625 8.2119 6.0960 21 7 7.0138 7.1402 6.7082 22 14 5.9371 9.6629 7.0923 23 1 5.4862 10.7377 6.1720 24 1 4.7980 9.2274 7.9397 25 1 7.0292 10.1771 7.9572 26 6 5.9945 6.4825 -0.0151 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.2544 3.7671 0.0015 35 1 3.3799 5.9511 -0.0004 36 1 6.0572 1.8237 0.0003 37 1 7.9885 3.2514 -0.6982 38 1 7.9738 3.7697 1.0027 39 1 7.8832 5.5450 -1.4727 40 1 9.1746 5.4567 -0.2458 41 1 8.5572 5.9010 2.0768 42 1 6.9209 5.2006 2.0570 43 1 7.3423 6.4093 4.4283 44 1 7.0218 7.1025 7.6775 45 1 5.4610 7.1378 0.6735 46 1 5.9380 6.8992 -1.0207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134526175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:00 Heat of formation + Delta-G solvation = -72.498517 kcal Electronic energy + Delta-G solvation = -26531.285712 eV Core-core repulsion = 22805.796309 eV Total energy + Delta-G solvation = -3725.489403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77821 -40.53294 -39.46587 -37.33358 -35.89830 -34.81747 -33.66883 -33.27075 -31.54128 -30.39265 -29.13396 -27.37369 -26.51064 -25.11449 -23.80204 -23.31208 -22.32860 -21.46346 -20.33754 -19.67161 -18.66339 -17.98369 -17.33295 -17.27624 -16.83680 -16.41054 -16.21770 -16.18719 -15.63584 -15.49021 -15.14413 -15.10070 -14.86578 -14.46009 -14.17464 -14.09795 -13.62772 -13.56033 -13.44146 -13.11689 -13.07404 -12.93226 -12.81946 -12.72929 -12.47425 -12.39672 -12.19003 -12.11296 -12.00273 -11.86997 -11.56864 -11.49908 -11.39202 -10.27060 -9.98824 -9.78854 -9.21693 -9.03367 -8.45415 -5.93817 0.29113 0.38075 1.36494 1.41240 1.55669 2.07143 2.15881 2.29165 2.67053 2.84602 3.21505 3.43022 3.69508 3.78170 3.89800 3.90884 3.97307 4.04709 4.14432 4.20482 4.26108 4.34621 4.35941 4.45809 4.51220 4.51310 4.56596 4.60266 4.68049 4.76711 4.86997 4.96113 4.97033 5.03414 5.08544 5.11582 5.14891 5.25270 5.32688 5.35469 5.42100 5.57116 5.78712 5.92372 6.10499 6.20233 6.41592 6.61930 7.14377 7.57961 8.13691 8.72486 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.003185 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.881784 B = 8790.138236 C =10289.452821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.051 3.949 4 O -0.328 6.328 5 C 0.117 3.883 6 C -0.211 4.211 7 C -0.085 4.085 8 C -0.158 4.158 9 C -0.045 4.045 10 C -0.161 4.161 11 C -0.116 4.116 12 C 0.053 3.947 13 N -0.520 5.520 14 C 0.057 3.943 15 C 0.443 3.557 16 O -0.613 6.613 17 N -0.576 5.576 18 C -0.329 4.329 19 H 0.079 0.921 20 C -0.015 4.015 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.270 1.270 26 C 0.099 3.901 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.060 0.940 43 H 0.394 0.606 44 H 0.277 0.723 45 H 0.069 0.931 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -15.694 -14.619 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.024 4.024 4 O -0.243 6.243 5 C 0.072 3.928 6 C -0.229 4.229 7 C -0.104 4.104 8 C -0.160 4.160 9 C -0.045 4.045 10 C -0.179 4.179 11 C -0.154 4.154 12 C -0.074 4.074 13 N -0.242 5.242 14 C -0.074 4.074 15 C 0.231 3.769 16 O -0.499 6.499 17 N -0.213 5.213 18 C -0.458 4.458 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.564 5.564 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.030 4.030 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.078 0.922 43 H 0.228 0.772 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.379 -14.794 -14.882 21.932 hybrid contribution -0.842 -0.205 1.169 1.455 sum -7.220 -14.999 -13.712 21.567 Atomic orbital electron populations 1.21692 0.92879 1.03296 1.02598 1.21494 0.97108 0.93574 1.03549 1.23115 0.77183 1.00154 1.01958 1.86014 1.22801 1.26708 1.88745 1.19021 0.92585 0.84394 0.96800 1.21332 1.00823 0.91895 1.08899 1.21074 0.94070 0.97889 0.97321 1.20487 0.94419 0.96552 1.04511 1.19558 0.96649 0.91147 0.97146 1.20501 0.91574 0.98343 1.07492 1.21218 0.89755 1.00460 1.03984 1.22429 0.99602 0.87316 0.98060 1.62218 1.12709 1.47212 1.02021 1.21730 1.02603 0.94234 0.88833 1.20769 0.83462 0.90142 0.82566 1.90456 1.52708 1.35942 1.70828 1.41949 1.56767 1.17615 1.05014 1.19685 1.40018 0.96924 0.89213 0.90302 1.26039 0.97270 1.00789 0.97323 1.69687 1.46911 1.29234 1.10519 0.84882 0.78171 0.77588 0.77773 1.19736 1.19694 1.19548 1.21021 0.87978 0.92164 1.01815 0.90709 0.92270 0.91784 0.90697 0.91252 0.91969 0.91150 0.83897 0.85400 0.84000 0.87289 0.89707 0.89225 0.88085 0.87097 0.92237 0.77210 0.91383 0.91241 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.62 6.30 30.60 0.19 -1.43 16 3 C 0.05 0.89 4.74 71.98 0.34 1.23 16 4 O -0.33 -7.91 10.14 -92.42 -0.94 -8.84 16 5 C 0.12 3.10 6.68 22.46 0.15 3.25 16 6 C -0.21 -5.47 9.04 22.31 0.20 -5.27 16 7 C -0.08 -2.46 9.64 22.32 0.22 -2.25 16 8 C -0.16 -4.79 5.19 -19.84 -0.10 -4.90 16 9 C -0.04 -1.19 5.05 -19.86 -0.10 -1.29 16 10 C -0.16 -4.14 9.59 22.42 0.22 -3.93 16 11 C -0.12 -2.47 5.16 29.82 0.15 -2.31 16 12 C 0.05 1.23 6.02 86.22 0.52 1.75 16 13 N -0.52 -17.24 4.74 -905.72 -4.30 -21.54 16 14 C 0.06 2.08 4.41 85.56 0.38 2.46 16 15 C 0.44 21.74 7.41 87.66 0.65 22.39 16 16 O -0.61 -34.35 14.05 -3.07 -0.04 -34.40 16 17 N -0.58 -30.43 5.29 -306.98 -1.62 -32.06 16 18 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 19 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 20 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 21 N -0.92 -50.73 13.05 21.66 0.28 -50.45 16 22 Si 0.99 43.65 29.55 68.60 2.03 45.68 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 C 0.10 3.34 5.18 85.59 0.44 3.78 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.08 7.67 -2.39 -0.02 1.06 16 33 H 0.07 1.08 7.67 -2.39 -0.02 1.07 16 34 H 0.14 3.01 6.32 -2.91 -0.02 2.99 16 35 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 37 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.08 1.81 7.06 -2.39 -0.02 1.79 16 39 H 0.09 1.89 8.05 -2.38 -0.02 1.87 16 40 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.11 3.51 8.08 -2.39 -0.02 3.49 16 42 H 0.06 2.11 5.91 -2.39 -0.01 2.10 16 43 H 0.39 19.96 7.90 -92.71 -0.73 19.22 16 44 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.07 2.93 5.84 -2.39 -0.01 2.91 16 46 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -69.72 368.88 0.92 -68.81 By element: Atomic # 1 Polarization: 38.35 SS G_CDS: 0.26 Total: 38.61 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 5.25 Total: -5.81 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -5.64 Total: -104.04 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.98 Total: -43.24 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.72 0.92 -68.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134526175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.691 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds