Wall clock time and date at job start Tue Mar 31 2020 14:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47127 * 2 1 4 4 O 1.42895 * 109.47359 * 179.97438 * 3 2 1 5 5 C 1.35895 * 117.00395 * 179.97438 * 4 3 2 6 6 C 1.38795 * 120.02818 * 0.02696 * 5 4 3 7 7 C 1.38148 * 120.05715 * 179.70521 * 6 5 4 8 8 C 1.38201 * 120.10816 * 0.54408 * 7 6 5 9 9 C 1.50703 * 119.97250 * 179.73023 * 8 7 6 10 10 N 1.46903 * 109.46848 * 254.85225 * 9 8 7 11 11 C 1.46900 * 110.99820 * 200.08543 * 10 9 8 12 12 C 1.50700 * 109.46719 * 170.00369 * 11 10 9 13 13 H 1.08003 * 120.00419 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00134 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99589 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00174 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46871 * 60.00437 * 16 14 12 18 18 H 1.48499 * 109.46794 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47270 * 300.00282 * 16 14 12 20 20 C 1.46903 * 110.99776 * 76.13658 * 10 9 8 21 21 C 1.52999 * 109.47183 * 68.88406 * 20 10 9 22 22 C 1.47203 * 109.47320 * 184.52759 * 21 20 10 23 23 N 9.82959 * 98.11042 * 339.60736 * 2 1 3 24 24 C 1.38751 * 120.05208 * 359.45101 * 8 7 6 25 25 O 1.35899 * 120.02760 * 180.25335 * 24 8 7 26 26 C 1.38616 * 120.02836 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46985 * 300.00363 * 1 2 3 29 29 H 1.09000 * 109.46696 * 60.00205 * 1 2 3 30 30 H 1.08995 * 109.47213 * 240.00110 * 2 1 3 31 31 H 1.08997 * 109.47090 * 120.00121 * 2 1 3 32 32 H 1.09007 * 109.47323 * 59.99841 * 3 2 1 33 33 H 1.09005 * 109.47043 * 300.00218 * 3 2 1 34 34 H 1.07998 * 119.97093 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.94962 * 180.27021 * 7 6 5 36 36 H 1.09004 * 109.47158 * 134.85497 * 9 8 7 37 37 H 1.08996 * 109.47059 * 14.85519 * 9 8 7 38 38 H 1.08995 * 109.47597 * 290.00126 * 11 10 9 39 39 H 1.08994 * 109.47089 * 50.00927 * 11 10 9 40 40 H 0.97006 * 119.99662 * 180.02562 * 15 14 12 41 41 H 1.08994 * 109.47128 * 188.89086 * 20 10 9 42 42 H 1.09004 * 109.46851 * 308.88967 * 20 10 9 43 43 H 1.08998 * 109.47637 * 304.53605 * 21 20 10 44 44 H 1.08998 * 109.46779 * 64.53607 * 21 20 10 45 45 H 0.96704 * 113.99919 * 90.00056 * 25 24 8 46 46 H 1.07999 * 120.05776 * 0.04645 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6533 0.0001 6 6 3.3307 3.8178 -0.0003 7 6 3.9573 5.0490 0.0054 8 6 5.3372 5.1246 0.0002 9 6 6.0175 6.4693 0.0002 10 7 6.5563 6.7455 -1.3382 11 6 7.6052 7.7725 -1.2818 12 6 8.3002 7.8543 -2.6165 13 1 7.9937 7.2079 -3.4256 14 6 9.3281 8.7538 -2.8045 15 7 9.7024 9.5399 -1.8189 16 14 10.1901 8.8548 -4.4587 17 1 9.2038 9.2124 -5.5097 18 1 11.2503 9.8929 -4.4017 19 1 10.8008 7.5398 -4.7798 20 6 5.4864 7.1363 -2.2660 21 6 4.9437 8.5105 -1.8690 22 6 3.8005 8.8542 -2.7303 23 7 2.9169 9.1214 -3.3909 24 6 6.0968 3.9634 0.0007 25 8 7.4537 4.0384 0.0008 26 6 5.4703 2.7265 0.0012 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2522 3.7613 -0.0007 35 1 3.3678 5.9539 0.0094 36 1 6.8312 6.4649 0.7256 37 1 5.2963 7.2414 0.2681 38 1 7.1567 8.7375 -1.0460 39 1 8.3294 7.5101 -0.5107 40 1 10.4254 10.1730 -1.9513 41 1 5.8834 7.1814 -3.2801 42 1 4.6821 6.4018 -2.2231 43 1 4.6204 8.4868 -0.8283 44 1 5.7269 9.2590 -1.9891 45 1 7.8463 4.0605 0.8843 46 1 6.0598 1.8216 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152846655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:28 Heat of formation + Delta-G solvation = -31.053022 kcal Electronic energy + Delta-G solvation = -26276.569438 eV Core-core repulsion = 22552.877247 eV Total energy + Delta-G solvation = -3723.692191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.36058 -38.78913 -37.50250 -36.04727 -35.77749 -34.17383 -32.66170 -31.27979 -30.24796 -29.46099 -27.24208 -26.55589 -24.96509 -23.42432 -22.98693 -21.71621 -21.14743 -19.70458 -18.73047 -17.41374 -16.81819 -16.49541 -16.40199 -16.23000 -15.34895 -15.28196 -14.65850 -14.62939 -14.38398 -14.26101 -13.92435 -13.73796 -13.46743 -13.40852 -13.00739 -12.55525 -12.45548 -12.35994 -12.18264 -11.95675 -11.74247 -11.67945 -11.48087 -11.42620 -11.20027 -11.09784 -11.05923 -10.71401 -10.66472 -10.58614 -10.30144 -10.16126 -9.84336 -9.26263 -8.67256 -8.44768 -7.99804 -7.28833 -6.04780 -4.05325 1.34108 1.47137 2.99234 3.10243 3.13158 3.34776 3.38745 3.42690 3.70096 4.35361 4.43867 4.45165 4.52886 4.57887 4.83453 4.85832 4.96971 5.06061 5.08223 5.10451 5.17735 5.28131 5.31981 5.42591 5.49311 5.55596 5.57136 5.64754 5.68925 5.77450 5.82755 5.90651 6.03834 6.10632 6.27515 6.33183 6.41868 6.61014 6.67556 6.75141 7.21897 7.22695 7.35531 7.77577 7.88226 7.96697 8.04285 8.12548 8.48923 9.02144 9.59431 11.05510 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003034 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.309556 B = 9226.375850 C =10250.995200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.318 6.318 5 C 0.137 3.863 6 C -0.221 4.221 7 C -0.064 4.064 8 C -0.127 4.127 9 C 0.095 3.905 10 N -0.514 5.514 11 C 0.189 3.811 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.899 5.899 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.276 1.276 20 C 0.074 3.926 21 C -0.074 4.074 22 C 0.225 3.775 23 N -0.464 5.464 24 C 0.174 3.826 25 O -0.474 6.474 26 C -0.186 4.186 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.000 1.000 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.386 0.614 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 -14.359 9.286 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.232 6.232 5 C 0.092 3.908 6 C -0.240 4.240 7 C -0.083 4.083 8 C -0.128 4.128 9 C -0.033 4.033 10 N -0.236 5.236 11 C 0.064 3.936 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.201 1.201 20 C -0.056 4.056 21 C -0.116 4.116 22 C -0.092 4.092 23 N -0.142 5.142 24 C 0.129 3.871 25 O -0.283 6.283 26 C -0.205 4.205 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.017 0.983 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.242 0.758 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.777 -14.443 7.565 22.004 hybrid contribution 0.454 0.960 0.143 1.071 sum -14.324 -13.483 7.707 21.127 Atomic orbital electron populations 1.21693 0.94317 1.02471 1.02255 1.21484 0.95969 0.94990 1.03698 1.22843 0.78697 0.98610 1.01456 1.86020 1.21062 1.27253 1.88878 1.18650 0.91669 0.83896 0.96628 1.21120 0.99688 0.92302 1.10890 1.20730 0.93591 0.96924 0.97011 1.20260 0.93083 0.95890 1.03616 1.20891 0.97763 0.91135 0.93483 1.62340 1.09801 1.45893 1.05526 1.19868 0.88247 0.87104 0.98343 1.21095 1.16675 1.19205 0.97412 0.91899 1.24932 0.96953 0.95682 0.96784 1.69929 1.29326 1.23099 1.31460 0.86624 0.79272 0.77733 0.84197 1.20343 1.21466 1.20147 1.22033 0.93651 0.90337 0.99595 1.20278 0.91162 1.03812 0.96353 1.29336 0.93876 0.92394 0.93623 1.81097 1.12350 1.10075 1.10710 1.17881 0.83462 0.90251 0.95554 1.84974 1.15055 1.95905 1.32406 1.20607 0.91702 0.98485 1.09700 0.91776 0.92375 0.92323 0.90812 0.90878 0.92108 0.92029 0.85858 0.85796 0.90346 0.94477 0.98263 0.94875 0.92896 0.89316 0.92102 0.88439 0.85597 0.75796 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.86 6.30 -26.73 -0.17 -1.03 16 3 C 0.06 0.51 4.74 37.16 0.18 0.69 16 4 O -0.32 -3.81 10.13 -19.41 -0.20 -4.00 16 5 C 0.14 1.76 6.68 -39.24 -0.26 1.50 16 6 C -0.22 -2.62 9.04 -39.41 -0.36 -2.98 16 7 C -0.06 -0.79 9.03 -39.63 -0.36 -1.15 16 8 C -0.13 -1.79 4.84 -104.44 -0.51 -2.30 16 9 C 0.10 1.44 4.63 -4.97 -0.02 1.42 16 10 N -0.51 -9.61 4.62 -237.52 -1.10 -10.71 16 11 C 0.19 4.29 4.36 -4.98 -0.02 4.26 16 12 C -0.51 -13.10 8.58 -34.44 -0.30 -13.39 16 13 H 0.06 1.65 7.10 -52.48 -0.37 1.28 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -25.09 13.29 55.43 0.74 -24.36 16 16 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 C 0.07 1.26 4.96 -3.82 -0.02 1.24 16 21 C -0.07 -1.12 4.93 -29.52 -0.15 -1.27 16 22 C 0.23 3.65 15.43 -20.79 -0.32 3.33 16 23 N -0.46 -8.43 18.53 42.12 0.78 -7.65 16 24 C 0.17 2.52 6.67 -39.24 -0.26 2.26 16 25 O -0.47 -7.00 12.83 -19.42 -0.25 -7.25 16 26 C -0.19 -2.53 9.93 -39.29 -0.39 -2.92 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.46 7.66 -51.92 -0.40 0.07 16 33 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 34 H 0.12 1.19 6.29 -52.49 -0.33 0.86 16 35 H 0.12 1.33 8.00 -52.48 -0.42 0.91 16 36 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 37 H 0.04 0.50 5.85 -51.93 -0.30 0.19 16 38 H 0.00 -0.01 5.98 -51.93 -0.31 -0.32 16 39 H 0.03 0.82 7.82 -51.93 -0.41 0.42 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 1.69 7.00 -51.93 -0.36 1.33 16 42 H 0.06 0.96 6.95 -51.93 -0.36 0.60 16 43 H 0.10 1.24 6.25 -51.93 -0.32 0.92 16 44 H 0.13 2.15 6.48 -51.93 -0.34 1.82 16 45 H 0.39 3.77 9.06 45.56 0.41 4.18 16 46 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -31.21 382.51 -7.94 -39.15 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.98 Total: 2.27 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -2.68 Total: -9.30 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.42 Total: -42.71 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.45 Total: -11.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.21 -7.94 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152846655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.092 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds