Wall clock time and date at job start Tue Mar 31 2020 14:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.47127 * 2 1 4 4 O 1.42895 * 109.47359 * 179.97438 * 3 2 1 5 5 C 1.35895 * 117.00395 * 179.97438 * 4 3 2 6 6 C 1.38795 * 120.02818 * 0.02696 * 5 4 3 7 7 C 1.38148 * 120.05715 * 179.70521 * 6 5 4 8 8 C 1.38201 * 120.10816 * 0.54408 * 7 6 5 9 9 C 1.50703 * 119.97250 * 179.73023 * 8 7 6 10 10 N 1.46903 * 109.46848 * 254.85225 * 9 8 7 11 11 C 1.46900 * 110.99820 * 200.08543 * 10 9 8 12 12 C 1.50700 * 109.46719 * 170.00369 * 11 10 9 13 13 H 1.08003 * 120.00419 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00134 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99589 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00174 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46871 * 60.00437 * 16 14 12 18 18 H 1.48499 * 109.46794 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47270 * 300.00282 * 16 14 12 20 20 C 1.46903 * 110.99776 * 76.13658 * 10 9 8 21 21 C 1.52999 * 109.47183 * 68.88406 * 20 10 9 22 22 C 1.47203 * 109.47320 * 184.52759 * 21 20 10 23 23 N 9.82959 * 98.11042 * 339.60736 * 2 1 3 24 24 C 1.38751 * 120.05208 * 359.45101 * 8 7 6 25 25 O 1.35899 * 120.02760 * 180.25335 * 24 8 7 26 26 C 1.38616 * 120.02836 * 179.97438 * 5 4 3 27 27 H 1.08993 * 109.47161 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46985 * 300.00363 * 1 2 3 29 29 H 1.09000 * 109.46696 * 60.00205 * 1 2 3 30 30 H 1.08995 * 109.47213 * 240.00110 * 2 1 3 31 31 H 1.08997 * 109.47090 * 120.00121 * 2 1 3 32 32 H 1.09007 * 109.47323 * 59.99841 * 3 2 1 33 33 H 1.09005 * 109.47043 * 300.00218 * 3 2 1 34 34 H 1.07998 * 119.97093 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.94962 * 180.27021 * 7 6 5 36 36 H 1.09004 * 109.47158 * 134.85497 * 9 8 7 37 37 H 1.08996 * 109.47059 * 14.85519 * 9 8 7 38 38 H 1.08995 * 109.47597 * 290.00126 * 11 10 9 39 39 H 1.08994 * 109.47089 * 50.00927 * 11 10 9 40 40 H 0.97006 * 119.99662 * 180.02562 * 15 14 12 41 41 H 1.08994 * 109.47128 * 188.89086 * 20 10 9 42 42 H 1.09004 * 109.46851 * 308.88967 * 20 10 9 43 43 H 1.08998 * 109.47637 * 304.53605 * 21 20 10 44 44 H 1.08998 * 109.46779 * 64.53607 * 21 20 10 45 45 H 0.96704 * 113.99919 * 90.00056 * 25 24 8 46 46 H 1.07999 * 120.05776 * 0.04645 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0860 2.6533 0.0001 6 6 3.3307 3.8178 -0.0003 7 6 3.9573 5.0490 0.0054 8 6 5.3372 5.1246 0.0002 9 6 6.0175 6.4693 0.0002 10 7 6.5563 6.7455 -1.3382 11 6 7.6052 7.7725 -1.2818 12 6 8.3002 7.8543 -2.6165 13 1 7.9937 7.2079 -3.4256 14 6 9.3281 8.7538 -2.8045 15 7 9.7024 9.5399 -1.8189 16 14 10.1901 8.8548 -4.4587 17 1 9.2038 9.2124 -5.5097 18 1 11.2503 9.8929 -4.4017 19 1 10.8008 7.5398 -4.7798 20 6 5.4864 7.1363 -2.2660 21 6 4.9437 8.5105 -1.8690 22 6 3.8005 8.8542 -2.7303 23 7 2.9169 9.1214 -3.3909 24 6 6.0968 3.9634 0.0007 25 8 7.4537 4.0384 0.0008 26 6 5.4703 2.7265 0.0012 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2522 3.7613 -0.0007 35 1 3.3678 5.9539 0.0094 36 1 6.8312 6.4649 0.7256 37 1 5.2963 7.2414 0.2681 38 1 7.1567 8.7375 -1.0460 39 1 8.3294 7.5101 -0.5107 40 1 10.4254 10.1730 -1.9513 41 1 5.8834 7.1814 -3.2801 42 1 4.6821 6.4018 -2.2231 43 1 4.6204 8.4868 -0.8283 44 1 5.7269 9.2590 -1.9891 45 1 7.8463 4.0605 0.8843 46 1 6.0598 1.8216 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152846655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:27 Heat of formation + Delta-G solvation = -51.046866 kcal Electronic energy + Delta-G solvation = -26277.436436 eV Core-core repulsion = 22552.877247 eV Total energy + Delta-G solvation = -3724.559189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.32977 -39.83637 -38.81114 -37.32898 -36.88363 -34.86821 -34.55042 -32.42648 -31.43902 -30.70434 -28.63495 -27.49304 -26.17996 -25.09103 -23.85555 -22.66932 -22.11373 -21.06708 -19.68648 -18.79858 -18.19992 -17.80196 -17.28964 -17.19282 -16.83331 -16.51176 -16.10662 -15.70744 -15.63201 -15.17685 -15.02967 -14.89665 -14.80285 -14.43683 -14.22329 -13.75076 -13.54703 -13.35714 -13.23682 -13.16107 -12.98947 -12.89244 -12.75589 -12.70736 -12.45956 -12.38231 -12.29351 -11.98757 -11.89587 -11.74947 -11.50138 -11.42013 -11.33456 -11.12154 -10.48630 -9.66649 -9.01053 -8.76700 -8.09301 -6.14822 0.36207 0.45862 1.45838 1.46915 1.53884 1.78355 1.81659 2.18903 2.46936 2.70090 3.05114 3.24818 3.52812 3.63704 3.86182 3.97415 4.00143 4.08776 4.11857 4.23642 4.28186 4.33357 4.37098 4.51453 4.53820 4.57336 4.65172 4.75841 4.82054 4.89687 4.99195 5.07692 5.13343 5.19670 5.22822 5.27770 5.36464 5.40791 5.44012 5.50998 5.68644 5.75777 5.79153 6.20926 6.45936 6.48054 6.61389 6.78579 7.00991 7.04239 7.53456 8.99630 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.003034 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.309556 B = 9226.375850 C =10250.995200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.051 3.949 4 O -0.332 6.332 5 C 0.135 3.865 6 C -0.219 4.219 7 C -0.059 4.059 8 C -0.142 4.142 9 C 0.099 3.901 10 N -0.526 5.526 11 C 0.205 3.795 12 C -0.511 4.511 13 H 0.054 0.946 14 C 0.012 3.988 15 N -0.927 5.927 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.079 3.921 21 C -0.060 4.060 22 C 0.246 3.754 23 N -0.494 5.494 24 C 0.163 3.837 25 O -0.497 6.497 26 C -0.201 4.201 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.072 0.928 37 H 0.061 0.939 38 H -0.002 1.002 39 H 0.006 0.994 40 H 0.261 0.739 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.131 0.869 44 H 0.108 0.892 45 H 0.403 0.597 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 -14.829 9.606 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.023 4.023 4 O -0.246 6.246 5 C 0.089 3.911 6 C -0.237 4.237 7 C -0.077 4.077 8 C -0.143 4.143 9 C -0.029 4.029 10 N -0.249 5.249 11 C 0.079 3.921 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.187 4.187 15 N -0.568 5.568 16 Si 0.773 3.227 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.052 4.052 21 C -0.102 4.102 22 C -0.071 4.071 23 N -0.173 5.173 24 C 0.118 3.882 25 O -0.310 6.310 26 C -0.220 4.220 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.167 0.833 35 H 0.165 0.835 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.015 0.985 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.148 0.852 44 H 0.126 0.874 45 H 0.261 0.739 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.835 -14.931 7.892 23.846 hybrid contribution 1.037 0.983 0.085 1.431 sum -15.798 -13.949 7.978 22.534 Atomic orbital electron populations 1.21683 0.92840 1.03179 1.02697 1.21502 0.97125 0.93945 1.03387 1.23130 0.76950 0.99919 1.02334 1.86018 1.22994 1.26997 1.88633 1.18785 0.91568 0.84732 0.95974 1.21383 1.00940 0.91578 1.09820 1.20974 0.92894 0.98102 0.95738 1.20184 0.93877 0.94882 1.05366 1.20886 0.98171 0.92583 0.91227 1.62156 1.10191 1.44488 1.08015 1.19492 0.88807 0.88003 0.95763 1.21412 1.16654 1.18402 0.98548 0.92799 1.25593 0.97824 0.95734 0.99511 1.70019 1.29965 1.23859 1.32951 0.85782 0.78362 0.77529 0.80988 1.19886 1.21183 1.20182 1.21924 0.93460 0.91864 0.97904 1.20157 0.90164 1.01958 0.97890 1.29348 0.93376 0.91508 0.92876 1.81125 1.13537 1.10976 1.11627 1.18043 0.83291 0.90844 0.96056 1.84910 1.15765 1.96001 1.34280 1.20674 0.92470 0.98278 1.10605 0.90997 0.91690 0.92101 0.91433 0.90957 0.90752 0.91466 0.83333 0.83490 0.90995 0.92063 0.98481 0.97539 0.92987 0.91927 0.90263 0.85175 0.87405 0.73860 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.99 0.71 -0.50 16 2 C -0.12 -1.48 6.30 30.60 0.19 -1.29 16 3 C 0.05 0.77 4.74 71.98 0.34 1.11 16 4 O -0.33 -7.47 10.13 -92.37 -0.94 -8.41 16 5 C 0.13 3.27 6.68 22.49 0.15 3.42 16 6 C -0.22 -4.56 9.04 22.38 0.20 -4.36 16 7 C -0.06 -1.28 9.03 22.24 0.20 -1.08 16 8 C -0.14 -3.77 4.84 -19.75 -0.10 -3.87 16 9 C 0.10 2.85 4.63 85.56 0.40 3.24 16 10 N -0.53 -19.39 4.62 -905.37 -4.18 -23.57 16 11 C 0.20 9.38 4.36 85.56 0.37 9.75 16 12 C -0.51 -26.79 8.58 25.60 0.22 -26.57 16 13 H 0.05 2.87 7.10 -2.91 -0.02 2.85 16 14 C 0.01 0.63 5.46 84.65 0.46 1.09 16 15 N -0.93 -52.27 13.29 21.45 0.28 -51.98 16 16 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C 0.08 2.58 4.96 86.30 0.43 3.00 16 21 C -0.06 -1.70 4.93 28.79 0.14 -1.56 16 22 C 0.25 7.51 15.43 89.45 1.38 8.89 16 23 N -0.49 -17.14 18.53 20.00 0.37 -16.77 16 24 C 0.16 4.64 6.67 22.49 0.15 4.79 16 25 O -0.50 -14.88 12.83 -92.42 -1.19 -16.06 16 26 C -0.20 -5.38 9.93 22.46 0.22 -5.16 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.92 7.66 -2.38 -0.02 0.90 16 33 H 0.07 0.94 7.66 -2.38 -0.02 0.92 16 34 H 0.15 2.30 6.29 -2.91 -0.02 2.28 16 35 H 0.15 2.50 8.00 -2.91 -0.02 2.48 16 36 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 37 H 0.06 1.46 5.85 -2.39 -0.01 1.44 16 38 H 0.00 -0.11 5.98 -2.39 -0.01 -0.12 16 39 H 0.01 0.33 7.82 -2.39 -0.02 0.31 16 40 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 41 H 0.06 2.37 7.00 -2.39 -0.02 2.36 16 42 H 0.08 2.31 6.95 -2.38 -0.02 2.30 16 43 H 0.13 2.86 6.25 -2.39 -0.01 2.85 16 44 H 0.11 3.59 6.48 -2.39 -0.02 3.57 16 45 H 0.40 8.09 9.06 -74.05 -0.67 7.42 16 46 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -66.70 382.51 2.19 -64.51 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.33 Total: 15.85 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.48 Total: -9.08 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.53 Total: -92.32 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -2.12 Total: -24.47 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -66.70 2.19 -64.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152846655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.468 kcal (2) G-P(sol) polarization free energy of solvation -66.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds