Wall clock time and date at job start Tue Mar 31 2020 14:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47067 * 2 1 4 4 O 1.42893 * 109.47468 * 120.00068 * 2 1 3 5 5 C 1.35927 * 117.00147 * 85.05318 * 4 2 1 6 6 C 1.38868 * 120.40182 * 174.40285 * 5 4 2 7 7 N 1.31893 * 121.01147 * 180.02562 * 6 5 4 8 8 C 1.31672 * 121.94740 * 359.65331 * 7 6 5 9 9 C 1.39604 * 120.67854 * 0.63551 * 8 7 6 10 10 C 1.47730 * 120.53268 * 179.67775 * 9 8 7 11 11 O 1.21595 * 119.99950 * 146.49747 * 10 9 8 12 12 N 1.34778 * 120.00535 * 326.49672 * 10 9 8 13 13 C 1.36870 * 119.99583 * 4.67917 * 12 10 9 14 14 H 1.08003 * 120.00324 * 322.33559 * 13 12 10 15 15 C 1.39048 * 119.99762 * 142.33935 * 13 12 10 16 16 N 1.31367 * 120.00268 * 352.06700 * 15 13 12 17 17 Si 1.86801 * 119.99768 * 172.07040 * 15 13 12 18 18 H 1.48500 * 109.47429 * 89.99942 * 17 15 13 19 19 H 1.48505 * 109.47058 * 209.99714 * 17 15 13 20 20 H 1.48503 * 109.47189 * 329.99872 * 17 15 13 21 21 C 1.46494 * 120.00115 * 184.67446 * 12 10 9 22 22 C 1.54268 * 110.03333 * 55.02800 * 21 12 10 23 23 C 1.54962 * 104.16200 * 217.13302 * 22 21 12 24 24 C 1.54886 * 102.77720 * 37.89130 * 23 22 21 25 25 C 1.53872 * 110.03520 * 297.81131 * 21 12 10 26 26 C 1.38824 * 120.39816 * 354.38659 * 5 4 2 27 27 H 1.09001 * 109.47011 * 299.99707 * 1 2 3 28 28 H 1.09001 * 109.47369 * 60.00109 * 1 2 3 29 29 H 1.09005 * 109.46875 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47011 * 240.00293 * 2 1 3 31 31 H 1.09000 * 109.47704 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47174 * 300.00645 * 3 2 1 33 33 H 1.08999 * 109.46956 * 59.99717 * 3 2 1 34 34 H 1.07995 * 119.49388 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.65819 * 180.34312 * 8 7 6 36 36 H 0.97000 * 119.99522 * 185.01880 * 16 15 13 37 37 H 1.09001 * 110.01656 * 176.41740 * 21 12 10 38 38 H 1.09003 * 110.48737 * 335.78674 * 22 21 12 39 39 H 1.09004 * 110.48345 * 98.42007 * 22 21 12 40 40 H 1.08998 * 110.72039 * 279.57295 * 23 22 21 41 41 H 1.09003 * 110.92196 * 156.29434 * 23 22 21 42 42 H 1.08996 * 110.48522 * 203.40542 * 24 23 22 43 43 H 1.08997 * 110.60087 * 80.81086 * 24 23 22 44 44 H 1.09002 * 110.03713 * 238.56915 * 25 21 12 45 45 H 1.09002 * 110.03475 * 359.97438 * 25 21 12 46 46 H 1.08000 * 120.88423 * 0.03904 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.1137 -2.0269 1.0974 6 6 2.6770 -2.7418 2.1462 7 7 2.7875 -4.0549 2.0915 8 6 2.3672 -4.7468 1.0530 9 6 1.7944 -4.1045 -0.0462 10 6 1.3305 -4.8833 -1.2127 11 8 0.3587 -4.5136 -1.8430 12 7 1.9844 -6.0037 -1.5783 13 6 3.0184 -6.4728 -0.8141 14 1 3.7023 -5.7796 -0.3467 15 6 3.1886 -7.8417 -0.6395 16 7 2.2739 -8.6782 -1.0745 17 14 4.7181 -8.4913 0.2138 18 1 4.4671 -8.5877 1.6743 19 1 5.0498 -9.8364 -0.3211 20 1 5.8534 -7.5665 -0.0333 21 6 1.5883 -6.7195 -2.7936 22 6 1.6142 -5.7622 -4.0030 23 6 0.4016 -6.2028 -4.8614 24 6 -0.6646 -6.5528 -3.7939 25 6 0.1401 -7.2225 -2.6608 26 6 1.6611 -2.7110 -0.0226 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.0307 -2.2144 3.0197 35 1 2.4711 -5.8218 1.0496 36 1 2.3565 -9.6266 -0.8889 37 1 2.2608 -7.5595 -2.9678 38 1 1.4941 -4.7296 -3.6748 39 1 2.5420 -5.8800 -4.5629 40 1 0.6510 -7.0788 -5.4601 41 1 0.0581 -5.3870 -5.4975 42 1 -1.3992 -7.2471 -4.2019 43 1 -1.1550 -5.6496 -3.4311 44 1 0.1096 -8.3064 -2.7714 45 1 -0.2679 -6.9344 -1.6919 46 1 1.2189 -2.1822 -0.8540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154535483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:06 Heat of formation + Delta-G solvation = -36.719919 kcal Electronic energy + Delta-G solvation = -27998.304047 eV Core-core repulsion = 24274.366121 eV Total energy + Delta-G solvation = -3723.937926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.43406 -39.21201 -37.95629 -36.00970 -34.53033 -33.24749 -31.73292 -31.40690 -29.73617 -27.76308 -27.37768 -27.04021 -25.14303 -23.79670 -23.11527 -20.92181 -20.47611 -19.83578 -18.83247 -18.39688 -16.79245 -16.46460 -16.26295 -15.60273 -15.28348 -14.82362 -14.60865 -14.35700 -14.11359 -14.01349 -13.48254 -13.21447 -13.07110 -12.86518 -12.71131 -12.44716 -12.30458 -12.21576 -11.93875 -11.80034 -11.55560 -11.25052 -11.16385 -10.94780 -10.78073 -10.74594 -10.42427 -10.34535 -10.26770 -10.15167 -9.95546 -9.61695 -9.30749 -9.13758 -8.96464 -8.39319 -7.92062 -7.57707 -6.51309 -4.19608 1.38989 1.76061 3.08706 3.17443 3.20299 3.25931 3.78637 4.00371 4.39778 4.57011 4.72191 4.83718 4.85081 5.00010 5.08257 5.19731 5.42131 5.46060 5.53478 5.54212 5.59275 5.61013 5.62732 5.69720 5.76629 5.96478 5.98917 6.12000 6.17084 6.33005 6.36312 6.42329 6.49893 6.52872 6.61990 6.66083 6.71754 6.80940 6.93558 7.04789 7.20966 7.28313 7.38526 7.46069 7.56069 7.81822 8.28108 8.48346 8.91116 9.35935 9.78421 10.51946 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.005221 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.031437 B = 5361.532860 C = 7206.927970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.075 3.925 3 C -0.146 4.146 4 O -0.309 6.309 5 C 0.059 3.941 6 C 0.069 3.931 7 N -0.462 5.462 8 C 0.100 3.900 9 C -0.105 4.105 10 C 0.504 3.496 11 O -0.588 6.588 12 N -0.419 5.419 13 C -0.352 4.352 14 H 0.096 0.904 15 C 0.049 3.951 16 N -0.854 5.854 17 Si 0.914 3.086 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.267 1.267 21 C 0.168 3.832 22 C -0.139 4.139 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.095 4.095 26 C -0.131 4.131 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.154 0.846 35 H 0.196 0.804 36 H 0.273 0.727 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.539 10.123 -0.619 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.018 3.982 3 C -0.203 4.203 4 O -0.223 6.223 5 C 0.012 3.988 6 C -0.090 4.090 7 N -0.171 5.171 8 C -0.058 4.058 9 C -0.110 4.110 10 C 0.292 3.708 11 O -0.474 6.474 12 N -0.135 5.135 13 C -0.480 4.480 14 H 0.114 0.886 15 C -0.159 4.159 16 N -0.489 5.489 17 Si 0.740 3.260 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.192 1.192 21 C 0.064 3.936 22 C -0.178 4.178 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.133 4.133 26 C -0.159 4.159 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.171 0.829 35 H 0.212 0.788 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.584 9.722 -0.171 9.741 hybrid contribution 0.339 -0.041 -0.463 0.575 sum -0.246 9.681 -0.634 9.705 Atomic orbital electron populations 1.22377 0.95043 1.03562 1.02774 1.22409 0.94460 0.93520 0.87770 1.21832 1.02004 0.93621 1.02837 1.86079 1.81685 1.15960 1.38560 1.19956 0.99378 0.83334 0.96168 1.22223 0.99450 0.89989 0.97292 1.67883 1.16509 1.06361 1.26323 1.24180 0.91844 1.02688 0.87048 1.21067 0.99099 0.93203 0.97607 1.17933 0.84072 0.84209 0.84550 1.90617 1.27627 1.72670 1.56503 1.43501 1.28538 1.21159 1.20339 1.19683 1.06648 0.91514 1.30152 0.88649 1.25432 0.97920 0.96150 0.96364 1.69868 1.32892 1.04128 1.41989 0.86105 0.81602 0.78527 0.79809 1.19561 1.20605 1.19176 1.21446 0.96303 0.93475 0.82337 1.22811 0.96605 1.01593 0.96749 1.22324 0.96344 0.99445 0.97100 1.22333 0.97058 1.00230 0.96159 1.22047 0.94648 0.98742 0.97912 1.21740 1.01496 0.94347 0.98287 0.91616 0.91109 0.91444 0.90926 0.91730 0.90667 0.91571 0.82875 0.78802 0.91620 0.88129 0.90732 0.93247 0.92633 0.92916 0.93712 0.91289 0.92418 0.92202 0.84247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.19 37.16 0.34 -1.73 16 2 C 0.07 0.92 2.85 -26.73 -0.08 0.84 16 3 C -0.15 -1.35 9.56 37.16 0.36 -1.00 16 4 O -0.31 -4.60 9.81 -19.51 -0.19 -4.79 16 5 C 0.06 1.00 6.61 -39.13 -0.26 0.74 16 6 C 0.07 1.18 11.13 -17.29 -0.19 0.99 16 7 N -0.46 -9.01 10.34 -12.77 -0.13 -9.14 16 8 C 0.10 2.09 8.86 -17.11 -0.15 1.94 16 9 C -0.10 -2.23 5.51 -104.84 -0.58 -2.81 16 10 C 0.50 11.82 6.28 -12.38 -0.08 11.74 16 11 O -0.59 -14.36 12.88 5.28 0.07 -14.29 16 12 N -0.42 -9.94 2.48 -107.65 -0.27 -10.21 16 13 C -0.35 -8.36 6.38 -15.00 -0.10 -8.46 16 14 H 0.10 2.25 5.94 -52.48 -0.31 1.94 16 15 C 0.05 1.15 5.06 -17.45 -0.09 1.07 16 16 N -0.85 -20.73 10.82 55.50 0.60 -20.13 16 17 Si 0.91 18.63 29.56 -169.99 -5.03 13.61 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 C 0.17 3.79 2.27 -66.82 -0.15 3.64 16 22 C -0.14 -2.81 6.07 -25.03 -0.15 -2.96 16 23 C -0.11 -2.02 6.91 -24.70 -0.17 -2.19 16 24 C -0.12 -2.29 6.39 -25.07 -0.16 -2.45 16 25 C -0.10 -2.08 5.24 -25.61 -0.13 -2.21 16 26 C -0.13 -2.45 7.91 -38.70 -0.31 -2.76 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.92 6.93 -51.93 -0.36 0.56 16 30 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.20 4.32 5.49 -52.48 -0.29 4.03 16 36 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 37 H 0.10 2.43 6.32 -51.93 -0.33 2.10 16 38 H 0.07 1.63 6.02 -51.93 -0.31 1.32 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.42 7.32 -51.93 -0.38 1.04 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 45 H 0.06 1.47 7.20 -51.93 -0.37 1.09 16 46 H 0.14 2.48 5.55 -52.49 -0.29 2.19 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -26.29 358.35 -8.21 -34.50 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.76 Total: 10.68 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.90 Total: -5.62 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.20 Total: -39.48 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.12 Total: -19.08 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.29 -8.21 -34.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154535483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.221 kcal (2) G-P(sol) polarization free energy of solvation -26.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds