Wall clock time and date at job start Tue Mar 31 2020 14:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 O 1.42899 * 109.47044 * 119.99638 * 2 1 3 5 5 C 1.35924 * 116.99440 * 90.71168 * 4 2 1 6 6 C 1.38852 * 120.40344 * 174.15712 * 5 4 2 7 7 N 1.31878 * 120.99951 * 179.97438 * 6 5 4 8 8 C 1.31683 * 121.94274 * 0.02562 * 7 6 5 9 9 C 1.39520 * 120.69000 * 0.27268 * 8 7 6 10 10 C 1.47855 * 120.53231 * 179.70231 * 9 8 7 11 11 O 1.21548 * 120.00168 * 123.92766 * 10 9 8 12 12 N 1.34782 * 119.99948 * 303.93013 * 10 9 8 13 13 C 1.46503 * 119.99595 * 4.27120 * 12 10 9 14 14 C 1.50704 * 109.47259 * 92.44658 * 13 12 10 15 15 H 1.08001 * 119.99429 * 359.97438 * 14 13 12 16 16 C 1.37867 * 120.00007 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00284 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99873 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47394 * 60.00359 * 18 16 14 20 20 H 1.48504 * 109.47146 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47215 * 299.99775 * 18 16 14 22 22 C 1.46498 * 119.99853 * 184.27120 * 12 10 9 23 23 C 1.52993 * 109.47386 * 85.33838 * 22 12 10 24 24 C 1.53006 * 117.49775 * 245.30057 * 23 22 12 25 25 C 1.53001 * 117.50358 * 176.63858 * 23 22 12 26 26 C 1.38840 * 120.40708 * 354.13294 * 5 4 2 27 27 H 1.09004 * 109.47361 * 59.99692 * 1 2 3 28 28 H 1.08998 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46991 * 299.99886 * 1 2 3 30 30 H 1.08990 * 109.47132 * 240.00136 * 2 1 3 31 31 H 1.08992 * 109.47477 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47252 * 300.00375 * 3 2 1 33 33 H 1.09004 * 109.47093 * 60.00176 * 3 2 1 34 34 H 1.08006 * 119.49777 * 359.95285 * 6 5 4 35 35 H 1.08004 * 119.65450 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.46498 * 212.43512 * 13 12 10 37 37 H 1.08990 * 109.47631 * 332.44095 * 13 12 10 38 38 H 0.96999 * 119.99954 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.46881 * 205.33812 * 22 12 10 40 40 H 1.08997 * 109.46994 * 325.33244 * 22 12 10 41 41 H 1.09001 * 115.55085 * 30.96212 * 23 22 12 42 42 H 1.08998 * 117.49526 * 359.97438 * 24 23 22 43 43 H 1.08993 * 117.50058 * 145.01609 * 24 23 22 44 44 H 1.08989 * 117.49798 * 214.97880 * 25 23 22 45 45 H 1.08998 * 117.49370 * 359.97438 * 25 23 22 46 46 H 1.07995 * 120.88051 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2262 -2.0107 1.0608 6 6 2.8022 -2.7136 2.1106 7 7 3.0204 -4.0111 2.0206 8 6 2.7062 -4.6971 0.9414 9 6 2.1292 -4.0658 -0.1609 10 6 1.7839 -4.8383 -1.3734 11 8 0.6460 -4.8229 -1.8003 12 7 2.7310 -5.5596 -2.0053 13 6 4.0790 -5.6540 -1.4394 14 6 4.1699 -6.8736 -0.5588 15 1 3.3094 -7.5140 -0.4329 16 6 5.3514 -7.1717 0.0861 17 7 6.3991 -6.3916 -0.0668 18 14 5.4638 -8.6831 1.1783 19 1 5.1781 -9.8978 0.3734 20 1 6.8303 -8.7788 1.7518 21 1 4.4723 -8.5736 2.2785 22 6 2.4124 -6.2492 -3.2580 23 6 2.5849 -5.2820 -4.4308 24 6 1.3323 -4.9012 -5.2226 25 6 2.3741 -5.8368 -5.8410 26 6 1.8770 -2.6905 -0.0983 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0762 -2.1896 3.0145 35 1 2.9017 -5.7588 0.9073 36 1 4.8071 -5.7339 -2.2467 37 1 4.2882 -4.7626 -0.8482 38 1 7.2304 -6.6016 0.3867 39 1 3.0833 -7.0988 -3.3858 40 1 1.3815 -6.6019 -3.2265 41 1 3.3498 -4.5165 -4.3002 42 1 0.3854 -5.3400 -4.9081 43 1 1.2733 -3.8854 -5.6132 44 1 3.0001 -5.4361 -6.6382 45 1 2.1129 -6.8910 -5.9332 46 1 1.4273 -2.1710 -0.9315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163125744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:03 Heat of formation + Delta-G solvation = -15.923395 kcal Electronic energy + Delta-G solvation = -27375.645996 eV Core-core repulsion = 23652.609874 eV Total energy + Delta-G solvation = -3723.036121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.57525 -39.23865 -37.99609 -36.87986 -34.84567 -33.34312 -32.55502 -31.93026 -29.91803 -27.85071 -27.44218 -26.54626 -24.04130 -23.42931 -22.88650 -22.12233 -20.97930 -20.62817 -19.27093 -17.73274 -16.82120 -16.57102 -16.33353 -16.14422 -15.70151 -15.37110 -14.63719 -14.57466 -14.46686 -14.22939 -13.93288 -13.34024 -13.18870 -13.05645 -12.83610 -12.51391 -12.39949 -12.37455 -12.11752 -12.00411 -11.74567 -11.48813 -11.32554 -11.27270 -11.01421 -10.94458 -10.83012 -10.74206 -10.35170 -10.13744 -9.80793 -9.77378 -9.60133 -9.32638 -8.90884 -8.58039 -8.01579 -7.84984 -6.22840 -4.31672 1.27037 1.65211 3.13251 3.25442 3.27706 3.30792 3.34393 3.68936 4.09473 4.23801 4.32174 4.62235 4.77019 4.84982 4.88466 5.01543 5.03205 5.09594 5.16915 5.20103 5.29705 5.35553 5.38017 5.44302 5.56292 5.59359 5.66822 5.72509 5.80285 5.91102 5.97868 6.03556 6.07782 6.08938 6.16226 6.26114 6.31800 6.44356 6.50959 6.69946 6.96258 7.12482 7.43273 7.44748 7.69351 7.97548 8.18899 8.40733 8.68756 8.85451 9.36187 10.83458 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.005373 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.446436 B = 5209.538962 C = 7531.871957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.306 6.306 5 C 0.060 3.940 6 C 0.083 3.917 7 N -0.448 5.448 8 C 0.122 3.878 9 C -0.129 4.129 10 C 0.563 3.437 11 O -0.560 6.560 12 N -0.583 5.583 13 C 0.234 3.766 14 C -0.549 4.549 15 H 0.064 0.936 16 C 0.074 3.926 17 N -0.881 5.881 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.271 1.271 22 C 0.151 3.849 23 C -0.162 4.162 24 C -0.174 4.174 25 C -0.179 4.179 26 C -0.128 4.128 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.159 0.841 35 H 0.190 0.810 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.252 10.277 -3.844 13.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.016 3.984 3 C -0.205 4.205 4 O -0.219 6.219 5 C 0.013 3.987 6 C -0.075 4.075 7 N -0.156 5.156 8 C -0.035 4.035 9 C -0.134 4.134 10 C 0.350 3.650 11 O -0.441 6.441 12 N -0.312 5.312 13 C 0.114 3.886 14 C -0.587 4.587 15 H 0.082 0.918 16 C -0.131 4.131 17 N -0.518 5.518 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.196 1.196 22 C 0.028 3.972 23 C -0.181 4.181 24 C -0.211 4.211 25 C -0.217 4.217 26 C -0.155 4.155 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.176 0.824 35 H 0.207 0.793 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.198 10.003 -3.149 12.720 hybrid contribution -0.047 -0.333 -0.407 0.528 sum -7.245 9.671 -3.556 12.596 Atomic orbital electron populations 1.22327 0.94910 1.03304 1.02888 1.22458 0.94449 0.93645 0.87840 1.21866 1.02176 0.93627 1.02856 1.86111 1.81314 1.17323 1.37195 1.19921 0.99170 0.83903 0.95671 1.22354 0.97545 0.90155 0.97482 1.67863 1.15319 1.06359 1.26058 1.23827 0.90427 1.02633 0.86626 1.20803 1.01437 0.93980 0.97175 1.18055 0.84792 0.79429 0.82729 1.90690 1.20296 1.65629 1.67458 1.48145 1.13617 1.47144 1.22281 1.19561 0.76579 0.97994 0.94445 1.21374 0.97931 1.10230 1.29168 0.91787 1.24912 0.95278 0.96690 0.96226 1.69902 1.02198 1.37365 1.42317 0.86599 0.77582 0.82783 0.80895 1.20118 1.21069 1.19596 1.20875 1.01592 0.93494 0.81246 1.22779 1.00347 1.02591 0.92387 1.22963 0.94277 0.99670 1.04174 1.22912 1.03332 0.99464 0.95957 1.21562 1.01925 0.93957 0.98062 0.91078 0.91724 0.91471 0.90819 0.91608 0.90691 0.91499 0.82427 0.79316 0.94462 0.94295 0.92270 0.89458 0.90814 0.87977 0.88661 0.89590 0.89154 0.88836 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.36 37.16 0.35 -1.47 16 2 C 0.07 0.83 2.82 -26.73 -0.08 0.75 16 3 C -0.15 -1.32 9.56 37.16 0.36 -0.96 16 4 O -0.31 -4.38 9.79 -19.50 -0.19 -4.57 16 5 C 0.06 0.99 6.67 -39.13 -0.26 0.73 16 6 C 0.08 1.43 11.13 -17.30 -0.19 1.24 16 7 N -0.45 -9.02 10.34 -12.79 -0.13 -9.16 16 8 C 0.12 2.58 8.97 -17.14 -0.15 2.42 16 9 C -0.13 -2.59 4.63 -104.84 -0.49 -3.07 16 10 C 0.56 11.84 7.16 -12.32 -0.09 11.76 16 11 O -0.56 -12.48 16.72 5.32 0.09 -12.39 16 12 N -0.58 -12.00 2.46 -176.17 -0.43 -12.43 16 13 C 0.23 5.41 4.68 -5.19 -0.02 5.38 16 14 C -0.55 -13.57 6.78 -34.44 -0.23 -13.81 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 17 N -0.88 -23.79 13.29 55.43 0.74 -23.05 16 18 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.15 2.71 5.69 -4.05 -0.02 2.69 16 23 C -0.16 -2.54 5.98 -90.62 -0.54 -3.08 16 24 C -0.17 -2.43 10.18 -26.69 -0.27 -2.70 16 25 C -0.18 -2.29 10.26 -26.69 -0.27 -2.56 16 26 C -0.13 -2.24 8.40 -38.72 -0.33 -2.57 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.77 7.58 -51.93 -0.39 0.37 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.87 5.99 -51.93 -0.31 0.56 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.16 2.26 8.06 -52.48 -0.42 1.84 16 35 H 0.19 4.31 5.41 -52.48 -0.28 4.03 16 36 H 0.04 0.91 8.09 -51.93 -0.42 0.49 16 37 H 0.04 0.97 6.00 -51.93 -0.31 0.66 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.09 1.55 8.04 -51.93 -0.42 1.13 16 40 H 0.07 1.33 7.25 -51.93 -0.38 0.95 16 41 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.09 1.38 8.04 -51.93 -0.42 0.96 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.14 2.19 5.82 -52.49 -0.31 1.88 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -28.37 380.86 -8.57 -36.94 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.01 Total: 7.23 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.34 Total: -3.44 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.17 Total: -44.64 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.10 Total: -16.96 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.37 -8.57 -36.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163125744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.013 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds