Wall clock time and date at job start Tue Mar 31 2020 14:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 O 1.42899 * 109.47044 * 119.99638 * 2 1 3 5 5 C 1.35924 * 116.99440 * 90.71168 * 4 2 1 6 6 C 1.38852 * 120.40344 * 174.15712 * 5 4 2 7 7 N 1.31878 * 120.99951 * 179.97438 * 6 5 4 8 8 C 1.31683 * 121.94274 * 0.02562 * 7 6 5 9 9 C 1.39520 * 120.69000 * 0.27268 * 8 7 6 10 10 C 1.47855 * 120.53231 * 179.70231 * 9 8 7 11 11 O 1.21548 * 120.00168 * 123.92766 * 10 9 8 12 12 N 1.34782 * 119.99948 * 303.93013 * 10 9 8 13 13 C 1.46503 * 119.99595 * 4.27120 * 12 10 9 14 14 C 1.50704 * 109.47259 * 92.44658 * 13 12 10 15 15 H 1.08001 * 119.99429 * 359.97438 * 14 13 12 16 16 C 1.37867 * 120.00007 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00284 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99873 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47394 * 60.00359 * 18 16 14 20 20 H 1.48504 * 109.47146 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47215 * 299.99775 * 18 16 14 22 22 C 1.46498 * 119.99853 * 184.27120 * 12 10 9 23 23 C 1.52993 * 109.47386 * 85.33838 * 22 12 10 24 24 C 1.53006 * 117.49775 * 245.30057 * 23 22 12 25 25 C 1.53001 * 117.50358 * 176.63858 * 23 22 12 26 26 C 1.38840 * 120.40708 * 354.13294 * 5 4 2 27 27 H 1.09004 * 109.47361 * 59.99692 * 1 2 3 28 28 H 1.08998 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46991 * 299.99886 * 1 2 3 30 30 H 1.08990 * 109.47132 * 240.00136 * 2 1 3 31 31 H 1.08992 * 109.47477 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47252 * 300.00375 * 3 2 1 33 33 H 1.09004 * 109.47093 * 60.00176 * 3 2 1 34 34 H 1.08006 * 119.49777 * 359.95285 * 6 5 4 35 35 H 1.08004 * 119.65450 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.46498 * 212.43512 * 13 12 10 37 37 H 1.08990 * 109.47631 * 332.44095 * 13 12 10 38 38 H 0.96999 * 119.99954 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.46881 * 205.33812 * 22 12 10 40 40 H 1.08997 * 109.46994 * 325.33244 * 22 12 10 41 41 H 1.09001 * 115.55085 * 30.96212 * 23 22 12 42 42 H 1.08998 * 117.49526 * 359.97438 * 24 23 22 43 43 H 1.08993 * 117.50058 * 145.01609 * 24 23 22 44 44 H 1.08989 * 117.49798 * 214.97880 * 25 23 22 45 45 H 1.08998 * 117.49370 * 359.97438 * 25 23 22 46 46 H 1.07995 * 120.88051 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2262 -2.0107 1.0608 6 6 2.8022 -2.7136 2.1106 7 7 3.0204 -4.0111 2.0206 8 6 2.7062 -4.6971 0.9414 9 6 2.1292 -4.0658 -0.1609 10 6 1.7839 -4.8383 -1.3734 11 8 0.6460 -4.8229 -1.8003 12 7 2.7310 -5.5596 -2.0053 13 6 4.0790 -5.6540 -1.4394 14 6 4.1699 -6.8736 -0.5588 15 1 3.3094 -7.5140 -0.4329 16 6 5.3514 -7.1717 0.0861 17 7 6.3991 -6.3916 -0.0668 18 14 5.4638 -8.6831 1.1783 19 1 5.1781 -9.8978 0.3734 20 1 6.8303 -8.7788 1.7518 21 1 4.4723 -8.5736 2.2785 22 6 2.4124 -6.2492 -3.2580 23 6 2.5849 -5.2820 -4.4308 24 6 1.3323 -4.9012 -5.2226 25 6 2.3741 -5.8368 -5.8410 26 6 1.8770 -2.6905 -0.0983 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0762 -2.1896 3.0145 35 1 2.9017 -5.7588 0.9073 36 1 4.8071 -5.7339 -2.2467 37 1 4.2882 -4.7626 -0.8482 38 1 7.2304 -6.6016 0.3867 39 1 3.0833 -7.0988 -3.3858 40 1 1.3815 -6.6019 -3.2265 41 1 3.3498 -4.5165 -4.3002 42 1 0.3854 -5.3400 -4.9081 43 1 1.2733 -3.8854 -5.6132 44 1 3.0001 -5.4361 -6.6382 45 1 2.1129 -6.8910 -5.9332 46 1 1.4273 -2.1710 -0.9315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163125744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:02 Heat of formation + Delta-G solvation = -30.588158 kcal Electronic energy + Delta-G solvation = -27376.281907 eV Core-core repulsion = 23652.609874 eV Total energy + Delta-G solvation = -3723.672033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99827 -40.70438 -39.31842 -38.19502 -36.54681 -34.46365 -34.31014 -33.41248 -31.30104 -29.61555 -28.25835 -28.08390 -25.52360 -24.93251 -24.59120 -23.19604 -22.07581 -21.92116 -20.71781 -19.16192 -18.62717 -18.11332 -17.80729 -17.56144 -17.29116 -16.49218 -16.29899 -16.04361 -15.89109 -15.34704 -15.12420 -14.70410 -14.67114 -14.45469 -14.26889 -14.03922 -13.72366 -13.43435 -13.29115 -13.24696 -13.09468 -12.91221 -12.76043 -12.61347 -12.58203 -12.34875 -12.12767 -11.97044 -11.78463 -11.74385 -11.44418 -11.23817 -10.86951 -10.79072 -10.63988 -10.39096 -9.56934 -9.40490 -8.20931 -6.34689 -0.20913 0.20127 1.43967 1.46648 1.51991 1.60585 2.02471 2.14243 2.42605 2.74826 2.92673 3.10132 3.37612 3.55637 3.70219 3.78289 3.83373 3.87400 3.95737 4.00724 4.12171 4.12863 4.13063 4.35753 4.45884 4.65507 4.68828 4.75392 4.75675 4.79166 4.81727 4.84901 4.86927 4.89024 5.00486 5.01435 5.16740 5.19431 5.26212 5.26659 5.27560 5.44276 5.62601 5.76520 6.01873 6.20273 6.43694 6.75566 6.91727 7.13668 7.36822 8.84808 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.005373 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.446436 B = 5209.538962 C = 7531.871957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.060 3.940 3 C -0.143 4.143 4 O -0.304 6.304 5 C 0.077 3.923 6 C 0.082 3.918 7 N -0.468 5.468 8 C 0.103 3.897 9 C -0.145 4.145 10 C 0.563 3.437 11 O -0.576 6.576 12 N -0.583 5.583 13 C 0.254 3.746 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.034 3.966 17 N -0.913 5.913 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.150 3.850 23 C -0.186 4.186 24 C -0.170 4.170 25 C -0.153 4.153 26 C -0.127 4.127 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.189 0.811 35 H 0.166 0.834 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.268 0.732 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.105 0.895 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 11.655 -4.428 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.005 3.995 3 C -0.200 4.200 4 O -0.218 6.218 5 C 0.030 3.970 6 C -0.077 4.077 7 N -0.176 5.176 8 C -0.053 4.053 9 C -0.150 4.150 10 C 0.350 3.650 11 O -0.458 6.458 12 N -0.311 5.311 13 C 0.133 3.867 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.168 4.168 17 N -0.551 5.551 18 Si 0.774 3.226 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.196 1.196 22 C 0.028 3.972 23 C -0.205 4.205 24 C -0.207 4.207 25 C -0.190 4.190 26 C -0.154 4.154 27 H 0.112 0.888 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.206 0.794 35 H 0.183 0.817 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.123 0.877 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.946 11.372 -3.760 14.374 hybrid contribution 0.116 -0.610 -0.227 0.661 sum -7.830 10.763 -3.987 13.894 Atomic orbital electron populations 1.22318 0.93793 1.02491 1.04480 1.22842 0.95435 0.94743 0.86503 1.21890 1.01934 0.91784 1.04431 1.86136 1.80965 1.15808 1.38846 1.19871 0.97532 0.84930 0.94710 1.22826 0.96748 0.89343 0.98752 1.67796 1.15992 1.07903 1.25939 1.23395 0.92317 1.01872 0.87764 1.20760 1.02585 0.95105 0.96533 1.18209 0.84527 0.79324 0.82909 1.90662 1.20659 1.66314 1.68134 1.48120 1.12615 1.47270 1.23142 1.19138 0.77476 0.96694 0.93372 1.21502 0.97608 1.10313 1.29001 0.92309 1.25542 0.95029 0.98958 0.97307 1.69996 1.02641 1.38908 1.43519 0.85748 0.77379 0.80136 0.79380 1.19330 1.20901 1.19622 1.20987 1.01181 0.94002 0.81076 1.22607 1.01708 1.02946 0.93264 1.22996 0.93409 1.00783 1.03487 1.23033 1.01966 1.00018 0.94024 1.21718 1.01617 0.92974 0.99056 0.88756 0.93683 0.90687 0.91318 0.92030 0.88288 0.90764 0.79372 0.81749 0.95959 0.96057 0.92338 0.89746 0.91087 0.89121 0.89314 0.88317 0.87173 0.87705 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 9.36 71.98 0.67 -2.48 16 2 C 0.06 1.25 2.82 30.60 0.09 1.34 16 3 C -0.14 -2.14 9.56 71.98 0.69 -1.45 16 4 O -0.30 -8.11 9.79 -92.70 -0.91 -9.02 16 5 C 0.08 2.47 6.67 22.56 0.15 2.62 16 6 C 0.08 2.77 11.13 84.83 0.94 3.71 16 7 N -0.47 -19.12 10.34 -194.39 -2.01 -21.13 16 8 C 0.10 4.51 8.97 85.02 0.76 5.27 16 9 C -0.14 -5.96 4.63 -20.01 -0.09 -6.06 16 10 C 0.56 24.29 7.16 86.79 0.62 24.91 16 11 O -0.58 -26.01 16.72 -3.87 -0.06 -26.07 16 12 N -0.58 -24.76 2.46 -829.57 -2.04 -26.80 16 13 C 0.25 12.19 4.68 85.63 0.40 12.59 16 14 C -0.55 -27.79 6.78 25.60 0.17 -27.61 16 15 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 16 C 0.03 1.75 5.46 84.65 0.46 2.21 16 17 N -0.91 -50.30 13.29 21.44 0.28 -50.01 16 18 Si 0.95 41.82 29.54 68.60 2.03 43.84 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.15 5.47 5.69 86.38 0.49 5.96 16 23 C -0.19 -5.78 5.98 -10.79 -0.06 -5.84 16 24 C -0.17 -4.50 10.18 30.62 0.31 -4.19 16 25 C -0.15 -3.60 10.26 30.62 0.31 -3.28 16 26 C -0.13 -4.41 8.40 22.83 0.19 -4.22 16 27 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.04 1.00 7.58 -2.39 -0.02 0.98 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.51 5.99 -2.39 -0.01 1.49 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 1.02 8.14 -2.38 -0.02 1.01 16 33 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.19 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.17 7.91 5.41 -2.91 -0.02 7.90 16 36 H 0.02 1.13 8.09 -2.39 -0.02 1.11 16 37 H 0.02 1.11 6.00 -2.39 -0.01 1.10 16 38 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.08 3.06 8.04 -2.38 -0.02 3.04 16 40 H 0.07 2.60 7.25 -2.39 -0.02 2.58 16 41 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 42 H 0.09 2.48 8.04 -2.39 -0.02 2.46 16 43 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.15 4.75 5.82 -2.91 -0.02 4.74 16 Total: -1.00 -61.74 380.86 4.37 -57.36 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.97 Total: 28.35 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 6.11 Total: 3.48 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -3.77 Total: -97.94 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.97 Total: -35.09 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -61.74 4.37 -57.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163125744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.775 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds