Wall clock time and date at job start Tue Mar 31 2020 14:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47452 * 2 1 4 4 O 1.42897 * 109.47298 * 120.00384 * 2 1 3 5 5 C 1.35673 * 117.00457 * 143.93631 * 4 2 1 6 6 C 1.39282 * 119.61736 * 174.12431 * 5 4 2 7 7 C 1.38331 * 119.30293 * 180.02562 * 6 5 4 8 8 C 1.38782 * 118.56008 * 359.97438 * 7 6 5 9 9 C 1.39132 * 119.18887 * 0.02562 * 8 7 6 10 10 C 1.48148 * 119.69148 * 180.02562 * 9 8 7 11 11 O 1.21515 * 119.99863 * 6.28206 * 10 9 8 12 12 N 1.34771 * 119.99905 * 186.28584 * 10 9 8 13 13 C 1.46509 * 119.99835 * 184.77522 * 12 10 9 14 14 C 1.50695 * 109.46858 * 270.00081 * 13 12 10 15 15 H 1.08000 * 120.00664 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99450 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00266 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99697 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 60.00026 * 18 16 14 20 20 H 1.48500 * 109.47260 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47186 * 299.99683 * 18 16 14 22 22 C 1.46499 * 120.00134 * 4.77712 * 12 10 9 23 23 C 1.53001 * 109.47223 * 262.07347 * 22 12 10 24 24 C 1.52994 * 117.49969 * 256.72817 * 23 22 12 25 25 C 1.52992 * 117.49908 * 188.06323 * 23 22 12 26 26 N 1.31903 * 119.61184 * 354.41616 * 5 4 2 27 27 H 1.09003 * 109.47019 * 179.30552 * 1 2 3 28 28 H 1.09003 * 109.46604 * 299.30039 * 1 2 3 29 29 H 1.08995 * 109.46809 * 59.30030 * 1 2 3 30 30 H 1.09002 * 109.46933 * 240.00162 * 2 1 3 31 31 H 1.09001 * 109.47659 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47381 * 300.00237 * 3 2 1 33 33 H 1.09002 * 109.46920 * 60.00154 * 3 2 1 34 34 H 1.08004 * 120.35179 * 0.04006 * 6 5 4 35 35 H 1.08002 * 120.71942 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.40880 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.47008 * 30.00126 * 13 12 10 38 38 H 1.09000 * 109.46742 * 150.00173 * 13 12 10 39 39 H 0.97001 * 120.00196 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.46982 * 142.07579 * 22 12 10 41 41 H 1.09001 * 109.47244 * 22.07621 * 22 12 10 42 42 H 1.09009 * 115.54284 * 42.39499 * 23 22 12 43 43 H 1.09001 * 117.49964 * 359.97438 * 24 23 22 44 44 H 1.09002 * 117.49536 * 145.01878 * 24 23 22 45 45 H 1.09002 * 117.49833 * 214.97709 * 25 23 22 46 46 H 1.08995 * 117.50411 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1330 -1.4175 1.0317 6 6 3.7143 -1.9967 2.1571 7 6 4.8633 -2.7534 2.0121 8 6 5.3988 -2.9096 0.7413 9 6 4.7675 -2.3035 -0.3403 10 6 5.3293 -2.4635 -1.7018 11 8 6.2681 -3.2123 -1.8875 12 7 4.7992 -1.7784 -2.7342 13 6 5.2848 -2.0142 -4.0962 14 6 6.4289 -1.0787 -4.3906 15 1 6.7610 -0.3781 -3.6386 16 6 7.0512 -1.1164 -5.6204 17 7 6.6460 -1.9683 -6.5366 18 14 8.4700 0.0428 -5.9851 19 1 9.5704 -0.2021 -5.0186 20 1 8.9613 -0.1953 -7.3661 21 1 8.0056 1.4480 -5.8609 22 6 3.7375 -0.7978 -2.4946 23 6 2.3777 -1.4386 -2.7794 24 6 1.6868 -1.0745 -4.0951 25 6 1.1505 -0.5249 -2.7708 26 7 3.6683 -1.5788 -0.1630 27 1 -0.3633 -1.0276 -0.0125 28 1 -0.3633 0.5030 0.8962 29 1 -0.3633 0.5246 -0.8836 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.2726 -1.8569 3.1327 35 1 5.3333 -3.2126 2.8692 36 1 6.2947 -3.4945 0.5938 37 1 5.6262 -3.0455 -4.1868 38 1 4.4772 -1.8351 -4.8059 39 1 7.0841 -1.9951 -7.4017 40 1 3.8799 0.0598 -3.1522 41 1 3.7740 -0.4692 -1.4559 42 1 2.2505 -2.4558 -2.4088 43 1 2.2009 -0.3781 -4.7576 44 1 1.1047 -1.8520 -4.5898 45 1 0.2158 -0.9412 -2.3950 46 1 1.3119 0.5327 -2.5627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179048409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:05 Heat of formation + Delta-G solvation = 12.877228 kcal Electronic energy + Delta-G solvation = -28303.416939 eV Core-core repulsion = 24581.629706 eV Total energy + Delta-G solvation = -3721.787233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98707 -38.99828 -38.16826 -36.97217 -34.50442 -33.29068 -32.90518 -32.15564 -30.18732 -27.89294 -27.38911 -26.28046 -24.54789 -23.61398 -22.65421 -22.15203 -21.12338 -20.54601 -19.54186 -17.76595 -17.06201 -16.47925 -16.11659 -15.80374 -15.69985 -15.47219 -14.93053 -14.55267 -14.50680 -14.14333 -14.02414 -13.52033 -13.29847 -13.07178 -12.87509 -12.54822 -12.42716 -12.20563 -12.00363 -11.98760 -11.80706 -11.37916 -11.23773 -11.20062 -10.98523 -10.89287 -10.80767 -10.52490 -10.15870 -10.07819 -10.00399 -9.81727 -9.57448 -9.37043 -8.64920 -8.47107 -8.40324 -7.63871 -6.01925 -4.06285 0.81322 1.27525 2.97916 3.22892 3.33552 3.37699 3.41170 3.70690 4.01701 4.08916 4.36594 4.47521 4.78587 4.87191 4.92117 4.93673 5.01919 5.09841 5.16665 5.22163 5.29816 5.32603 5.35119 5.44977 5.52311 5.62881 5.68455 5.69826 5.79791 5.89321 5.96427 6.06107 6.07918 6.15633 6.18529 6.21244 6.37139 6.38245 6.45271 6.71374 7.07804 7.28605 7.44415 7.55882 7.74226 7.94388 8.25129 8.40214 8.87310 9.03706 9.58103 11.06076 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.004830 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.020164 B = 5795.539335 C = 6970.586823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 C -0.169 4.169 4 O -0.302 6.302 5 C 0.314 3.686 6 C -0.181 4.181 7 C -0.047 4.047 8 C -0.156 4.156 9 C 0.133 3.867 10 C 0.551 3.449 11 O -0.529 6.529 12 N -0.567 5.567 13 C 0.246 3.754 14 C -0.525 4.525 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.118 3.882 23 C -0.146 4.146 24 C -0.177 4.177 25 C -0.189 4.189 26 N -0.504 5.504 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.124 0.876 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 3.502 15.676 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 C -0.227 4.227 4 O -0.210 6.210 5 C 0.134 3.866 6 C -0.202 4.202 7 C -0.073 4.073 8 C -0.177 4.177 9 C -0.004 4.004 10 C 0.335 3.665 11 O -0.405 6.405 12 N -0.295 5.295 13 C 0.127 3.873 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.006 4.006 23 C -0.165 4.165 24 C -0.214 4.214 25 C -0.227 4.227 26 N -0.231 5.231 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.854 3.496 14.819 19.926 hybrid contribution 1.041 0.359 0.215 1.122 sum -11.813 3.855 15.034 19.504 Atomic orbital electron populations 1.21961 0.93409 1.02710 1.02668 1.23176 0.94721 0.93186 0.89974 1.22228 1.02018 0.95900 1.02541 1.86265 1.37284 1.59679 1.37789 1.20041 0.86876 0.90004 0.89703 1.21202 0.98114 1.02498 0.98413 1.21403 0.93569 0.94792 0.97491 1.21993 1.02319 1.01540 0.91872 1.21384 0.90419 0.92828 0.95722 1.17839 0.83433 0.82137 0.83077 1.90773 1.27180 1.39069 1.83517 1.48073 1.34989 1.37500 1.08932 1.19359 0.94631 0.98123 0.75166 1.21370 1.16407 1.19599 0.98989 0.92542 1.24907 0.97198 0.95819 0.96022 1.69920 1.41723 1.36068 1.05622 0.86580 0.82673 0.80993 0.77298 1.20168 1.21185 1.20305 1.21919 0.83657 0.90687 1.04369 1.22623 0.93292 0.99572 1.01005 1.23081 1.03815 1.03572 0.90952 1.23133 0.97710 0.99413 1.02437 1.67759 1.13300 1.19276 1.22779 0.92041 0.92182 0.90338 0.85222 0.92163 0.90868 0.92185 0.84188 0.83740 0.83273 0.94013 0.94407 0.92697 0.91494 0.85940 0.88471 0.88369 0.89320 0.89009 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.21 37.16 0.30 -1.03 16 2 C 0.04 0.50 2.27 -26.73 -0.06 0.44 16 3 C -0.17 -1.74 9.42 37.15 0.35 -1.39 16 4 O -0.30 -3.83 9.76 -18.72 -0.18 -4.01 16 5 C 0.31 4.26 7.49 -17.13 -0.13 4.13 16 6 C -0.18 -2.05 10.05 -39.16 -0.39 -2.44 16 7 C -0.05 -0.52 10.16 -39.35 -0.40 -0.92 16 8 C -0.16 -2.26 9.63 -39.05 -0.38 -2.64 16 9 C 0.13 2.31 6.59 -83.02 -0.55 1.76 16 10 C 0.55 12.07 7.65 -12.19 -0.09 11.97 16 11 O -0.53 -13.40 15.96 5.35 0.09 -13.31 16 12 N -0.57 -12.50 2.46 -176.06 -0.43 -12.94 16 13 C 0.25 6.49 5.14 -5.19 -0.03 6.46 16 14 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 15 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.12 2.10 4.95 -4.04 -0.02 2.08 16 23 C -0.15 -2.24 4.30 -90.63 -0.39 -2.63 16 24 C -0.18 -2.54 10.18 -26.69 -0.27 -2.81 16 25 C -0.19 -2.24 6.46 -26.70 -0.17 -2.41 16 26 N -0.50 -7.79 4.22 -9.87 -0.04 -7.83 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.58 7.22 -51.93 -0.37 0.21 16 30 H 0.13 1.60 1.33 -51.93 -0.07 1.53 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.65 7.55 -51.93 -0.39 0.26 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.15 2.15 7.65 -52.49 -0.40 1.75 16 37 H 0.04 1.23 7.49 -51.93 -0.39 0.85 16 38 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 1.25 7.96 -51.93 -0.41 0.83 16 41 H 0.12 2.06 3.87 -68.71 -0.27 1.79 16 42 H 0.10 1.61 8.14 -51.92 -0.42 1.18 16 43 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 0.94 7.02 -51.93 -0.36 0.58 16 46 H 0.09 1.00 6.92 -51.93 -0.36 0.64 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -32.35 368.15 -8.75 -41.10 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.80 Total: 3.32 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.64 Total: -3.02 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.26 Total: -46.58 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.10 Total: -17.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.35 -8.75 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179048409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.980 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds