Wall clock time and date at job start Tue Mar 31 2020 14:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47452 * 2 1 4 4 O 1.42897 * 109.47298 * 120.00384 * 2 1 3 5 5 C 1.35673 * 117.00457 * 143.93631 * 4 2 1 6 6 C 1.39282 * 119.61736 * 174.12431 * 5 4 2 7 7 C 1.38331 * 119.30293 * 180.02562 * 6 5 4 8 8 C 1.38782 * 118.56008 * 359.97438 * 7 6 5 9 9 C 1.39132 * 119.18887 * 0.02562 * 8 7 6 10 10 C 1.48148 * 119.69148 * 180.02562 * 9 8 7 11 11 O 1.21515 * 119.99863 * 6.28206 * 10 9 8 12 12 N 1.34771 * 119.99905 * 186.28584 * 10 9 8 13 13 C 1.46509 * 119.99835 * 184.77522 * 12 10 9 14 14 C 1.50695 * 109.46858 * 270.00081 * 13 12 10 15 15 H 1.08000 * 120.00664 * 359.97438 * 14 13 12 16 16 C 1.37884 * 119.99450 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00266 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99697 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 60.00026 * 18 16 14 20 20 H 1.48500 * 109.47260 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.47186 * 299.99683 * 18 16 14 22 22 C 1.46499 * 120.00134 * 4.77712 * 12 10 9 23 23 C 1.53001 * 109.47223 * 262.07347 * 22 12 10 24 24 C 1.52994 * 117.49969 * 256.72817 * 23 22 12 25 25 C 1.52992 * 117.49908 * 188.06323 * 23 22 12 26 26 N 1.31903 * 119.61184 * 354.41616 * 5 4 2 27 27 H 1.09003 * 109.47019 * 179.30552 * 1 2 3 28 28 H 1.09003 * 109.46604 * 299.30039 * 1 2 3 29 29 H 1.08995 * 109.46809 * 59.30030 * 1 2 3 30 30 H 1.09002 * 109.46933 * 240.00162 * 2 1 3 31 31 H 1.09001 * 109.47659 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47381 * 300.00237 * 3 2 1 33 33 H 1.09002 * 109.46920 * 60.00154 * 3 2 1 34 34 H 1.08004 * 120.35179 * 0.04006 * 6 5 4 35 35 H 1.08002 * 120.71942 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.40880 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.47008 * 30.00126 * 13 12 10 38 38 H 1.09000 * 109.46742 * 150.00173 * 13 12 10 39 39 H 0.97001 * 120.00196 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.46982 * 142.07579 * 22 12 10 41 41 H 1.09001 * 109.47244 * 22.07621 * 22 12 10 42 42 H 1.09009 * 115.54284 * 42.39499 * 23 22 12 43 43 H 1.09001 * 117.49964 * 359.97438 * 24 23 22 44 44 H 1.09002 * 117.49536 * 145.01878 * 24 23 22 45 45 H 1.09002 * 117.49833 * 214.97709 * 25 23 22 46 46 H 1.08995 * 117.50411 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1330 -1.4175 1.0317 6 6 3.7143 -1.9967 2.1571 7 6 4.8633 -2.7534 2.0121 8 6 5.3988 -2.9096 0.7413 9 6 4.7675 -2.3035 -0.3403 10 6 5.3293 -2.4635 -1.7018 11 8 6.2681 -3.2123 -1.8875 12 7 4.7992 -1.7784 -2.7342 13 6 5.2848 -2.0142 -4.0962 14 6 6.4289 -1.0787 -4.3906 15 1 6.7610 -0.3781 -3.6386 16 6 7.0512 -1.1164 -5.6204 17 7 6.6460 -1.9683 -6.5366 18 14 8.4700 0.0428 -5.9851 19 1 9.5704 -0.2021 -5.0186 20 1 8.9613 -0.1953 -7.3661 21 1 8.0056 1.4480 -5.8609 22 6 3.7375 -0.7978 -2.4946 23 6 2.3777 -1.4386 -2.7794 24 6 1.6868 -1.0745 -4.0951 25 6 1.1505 -0.5249 -2.7708 26 7 3.6683 -1.5788 -0.1630 27 1 -0.3633 -1.0276 -0.0125 28 1 -0.3633 0.5030 0.8962 29 1 -0.3633 0.5246 -0.8836 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.2726 -1.8569 3.1327 35 1 5.3333 -3.2126 2.8692 36 1 6.2947 -3.4945 0.5938 37 1 5.6262 -3.0455 -4.1868 38 1 4.4772 -1.8351 -4.8059 39 1 7.0841 -1.9951 -7.4017 40 1 3.8799 0.0598 -3.1522 41 1 3.7740 -0.4692 -1.4559 42 1 2.2505 -2.4558 -2.4088 43 1 2.2009 -0.3781 -4.7576 44 1 1.1047 -1.8520 -4.5898 45 1 0.2158 -0.9412 -2.3950 46 1 1.3119 0.5327 -2.5627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179048409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:04 Heat of formation + Delta-G solvation = -6.489881 kcal Electronic energy + Delta-G solvation = -28304.256759 eV Core-core repulsion = 24581.629706 eV Total energy + Delta-G solvation = -3722.627053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14960 -40.43790 -39.28936 -38.29463 -36.23518 -34.75725 -34.16111 -33.54405 -31.34488 -29.79321 -28.19981 -27.73641 -26.14969 -24.78540 -24.04717 -23.44452 -22.14104 -21.76014 -20.95123 -18.95453 -18.66971 -18.42605 -17.38852 -17.06251 -16.78999 -16.71705 -16.33977 -16.26802 -15.93053 -15.37222 -15.15066 -14.63263 -14.55753 -14.39747 -14.28200 -14.00181 -13.56771 -13.34677 -13.21214 -13.09580 -12.98635 -12.84629 -12.75895 -12.65287 -12.55253 -12.30689 -12.24066 -11.83882 -11.77193 -11.70959 -11.37630 -11.13106 -10.85065 -10.79455 -10.64710 -9.94039 -9.64917 -9.38409 -8.23286 -6.38205 -0.35182 0.26689 1.34870 1.39315 1.46787 1.80111 2.03285 2.16159 2.39133 2.79303 2.84456 3.06086 3.15266 3.68671 3.89882 3.94572 3.99097 4.03863 4.07759 4.13809 4.16715 4.23617 4.41669 4.45211 4.54293 4.72550 4.78852 4.83403 4.89271 4.91840 4.94714 4.98302 5.00901 5.05009 5.11405 5.14776 5.19678 5.26667 5.31461 5.35594 5.36782 5.50434 5.56496 5.81294 6.03754 6.25170 6.56172 6.69041 6.73376 7.19919 7.36103 8.83809 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.004830 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.020164 B = 5795.539335 C = 6970.586823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.035 3.965 3 C -0.168 4.168 4 O -0.302 6.302 5 C 0.302 3.698 6 C -0.160 4.160 7 C -0.030 4.030 8 C -0.157 4.157 9 C 0.102 3.898 10 C 0.542 3.458 11 O -0.580 6.580 12 N -0.575 5.575 13 C 0.265 3.735 14 C -0.544 4.544 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.967 3.033 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.262 1.262 22 C 0.122 3.878 23 C -0.163 4.163 24 C -0.192 4.192 25 C -0.145 4.145 26 N -0.513 5.513 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.192 0.808 36 H 0.142 0.858 37 H -0.003 1.003 38 H 0.027 0.973 39 H 0.268 0.732 40 H 0.051 0.949 41 H 0.139 0.861 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.118 0.882 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.448 5.217 18.515 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 C -0.225 4.225 4 O -0.209 6.209 5 C 0.121 3.879 6 C -0.180 4.180 7 C -0.054 4.054 8 C -0.179 4.179 9 C -0.033 4.033 10 C 0.330 3.670 11 O -0.461 6.461 12 N -0.302 5.302 13 C 0.144 3.856 14 C -0.583 4.583 15 H 0.067 0.933 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.203 1.203 20 H -0.200 1.200 21 H -0.187 1.187 22 C 0.000 4.000 23 C -0.182 4.182 24 C -0.229 4.229 25 C -0.182 4.182 26 N -0.240 5.240 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.133 0.867 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.196 0.804 35 H 0.209 0.791 36 H 0.160 0.840 37 H 0.015 0.985 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.156 0.844 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.136 0.864 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.500 5.236 17.671 23.451 hybrid contribution 1.458 -0.195 -0.555 1.572 sum -13.042 5.041 17.116 22.102 Atomic orbital electron populations 1.21981 0.91317 1.03082 1.04056 1.23348 0.96345 0.93227 0.89043 1.22233 1.00724 0.95691 1.03896 1.86285 1.36735 1.59596 1.38323 1.20394 0.87318 0.90472 0.89695 1.21711 0.97158 0.99992 0.99168 1.21853 0.92954 0.93669 0.96966 1.22108 1.02058 1.00906 0.92793 1.20639 0.92523 0.96556 0.93564 1.18586 0.82697 0.80887 0.84873 1.90711 1.29488 1.41079 1.84825 1.48076 1.36111 1.38548 1.07477 1.18784 0.93833 0.95199 0.77768 1.21593 1.17417 1.19969 0.99279 0.93325 1.25818 0.99853 0.97433 0.95638 1.70040 1.42980 1.37387 1.06062 0.85490 0.78819 0.79286 0.77355 1.20258 1.19976 1.18661 1.22096 0.83726 0.89347 1.04871 1.22374 0.93523 0.99762 1.02526 1.23107 1.04369 1.04008 0.91418 1.23247 0.96523 0.99593 0.98830 1.67410 1.12777 1.19381 1.24462 0.92165 0.91243 0.88573 0.86721 0.94170 0.89390 0.91018 0.80413 0.79076 0.83966 0.98475 0.95529 0.92307 0.93040 0.84425 0.89882 0.89969 0.88730 0.86399 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.21 71.98 0.59 -1.50 16 2 C 0.04 0.70 2.27 30.59 0.07 0.77 16 3 C -0.17 -3.05 9.42 71.98 0.68 -2.37 16 4 O -0.30 -6.76 9.76 -89.90 -0.88 -7.64 16 5 C 0.30 7.51 7.49 84.93 0.64 8.15 16 6 C -0.16 -2.95 10.05 22.54 0.23 -2.72 16 7 C -0.03 -0.54 10.16 22.42 0.23 -0.31 16 8 C -0.16 -4.46 9.63 22.61 0.22 -4.24 16 9 C 0.10 3.64 6.59 41.84 0.28 3.92 16 10 C 0.54 25.51 7.65 86.88 0.66 26.18 16 11 O -0.58 -31.88 15.96 -3.76 -0.06 -31.94 16 12 N -0.57 -27.29 2.46 -829.21 -2.04 -29.33 16 13 C 0.27 15.13 5.14 85.63 0.44 15.57 16 14 C -0.54 -32.74 9.39 25.60 0.24 -32.50 16 15 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 16 C 0.01 0.70 5.46 84.66 0.46 1.17 16 17 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 18 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 22 C 0.12 4.56 4.95 86.38 0.43 4.99 16 23 C -0.16 -5.12 4.30 -10.80 -0.05 -5.17 16 24 C -0.19 -5.60 10.18 30.62 0.31 -5.28 16 25 C -0.14 -3.17 6.46 30.62 0.20 -2.97 16 26 N -0.51 -15.70 4.22 -298.20 -1.26 -16.95 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.02 7.22 -2.39 -0.02 1.00 16 30 H 0.12 2.64 1.33 -2.39 0.00 2.63 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.31 7.55 -2.39 -0.02 1.29 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.14 4.19 7.65 -2.91 -0.02 4.17 16 37 H 0.00 -0.19 7.49 -2.39 -0.02 -0.20 16 38 H 0.03 1.54 8.07 -2.39 -0.02 1.53 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.05 2.03 7.96 -2.39 -0.02 2.01 16 41 H 0.14 4.76 3.87 -35.53 -0.14 4.62 16 42 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 43 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 44 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.12 2.02 7.02 -2.39 -0.02 2.00 16 46 H 0.11 2.07 6.92 -2.39 -0.02 2.05 16 Total: -1.00 -76.63 368.15 4.55 -72.08 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.86 Total: 18.84 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.62 Total: 3.66 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -3.02 Total: -103.00 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.94 Total: -39.58 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.63 4.55 -72.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179048409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.586 kcal (2) G-P(sol) polarization free energy of solvation -76.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds