Wall clock time and date at job start Tue Mar 31 2020 14:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47081 * 2 1 4 4 O 1.42898 * 109.47398 * 120.00160 * 2 1 3 5 5 C 1.35664 * 117.00220 * 149.99428 * 4 2 1 6 6 C 1.39283 * 119.61805 * 180.02562 * 5 4 2 7 7 C 1.38362 * 119.32655 * 180.02562 * 6 5 4 8 8 C 1.38738 * 118.57008 * 359.74450 * 7 6 5 9 9 C 1.39244 * 119.17833 * 0.47875 * 8 7 6 10 10 C 1.47978 * 119.69730 * 179.78969 * 9 8 7 11 11 O 1.21573 * 119.99940 * 8.81906 * 10 9 8 12 12 N 1.34786 * 120.00143 * 188.81747 * 10 9 8 13 13 C 1.36776 * 119.99900 * 189.92311 * 12 10 9 14 14 H 1.07998 * 119.99799 * 222.41465 * 13 12 10 15 15 C 1.39106 * 120.00246 * 42.42280 * 13 12 10 16 16 N 1.31331 * 119.99873 * 358.14452 * 15 13 12 17 17 Si 1.86796 * 120.00377 * 178.14821 * 15 13 12 18 18 H 1.48501 * 109.47029 * 89.99788 * 17 15 13 19 19 H 1.48501 * 109.47561 * 209.99782 * 17 15 13 20 20 H 1.48501 * 109.46853 * 330.00032 * 17 15 13 21 21 C 1.46497 * 119.99619 * 9.92778 * 12 10 9 22 22 C 1.55239 * 110.57736 * 238.10104 * 21 12 10 23 23 C 1.54889 * 102.58581 * 203.34034 * 22 21 12 24 24 C 1.54271 * 104.31577 * 37.92895 * 23 22 21 25 25 C 1.53873 * 106.59604 * 336.32460 * 24 23 22 26 26 N 1.31911 * 119.61024 * 0.02562 * 5 4 2 27 27 H 1.09005 * 109.46740 * 299.99703 * 1 2 3 28 28 H 1.08995 * 109.47550 * 59.99880 * 1 2 3 29 29 H 1.09004 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46740 * 240.00297 * 2 1 3 31 31 H 1.09000 * 109.47133 * 299.99954 * 3 2 1 32 32 H 1.08997 * 109.47422 * 60.00584 * 3 2 1 33 33 H 1.09005 * 109.46954 * 180.02562 * 3 2 1 34 34 H 1.07998 * 120.33183 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.71854 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.41729 * 180.24967 * 8 7 6 37 37 H 0.97005 * 119.99833 * 180.02562 * 16 15 13 38 38 H 1.09002 * 110.43867 * 0.67842 * 21 12 10 39 39 H 1.08997 * 110.90162 * 85.04486 * 22 21 12 40 40 H 1.09003 * 110.76483 * 321.56575 * 22 21 12 41 41 H 1.08999 * 110.48654 * 279.18535 * 23 22 21 42 42 H 1.09007 * 110.48983 * 156.67730 * 23 22 21 43 43 H 1.08995 * 110.02863 * 95.60691 * 24 23 22 44 44 H 1.08994 * 110.02940 * 216.99146 * 24 23 22 45 45 H 1.09000 * 110.03561 * 119.28150 * 25 24 23 46 46 H 1.08999 * 110.03428 * 240.66920 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1986 -1.3130 1.0652 6 6 3.7141 -1.9877 2.1692 7 6 4.9308 -2.6373 2.0591 8 6 5.5963 -2.5977 0.8424 9 6 5.0271 -1.9010 -0.2204 10 6 5.7293 -1.8474 -1.5218 11 8 6.7124 -2.5372 -1.7110 12 7 5.2791 -1.0338 -2.4975 13 6 5.7961 -1.1290 -3.7602 14 1 6.0258 -0.2336 -4.3186 15 6 6.0259 -2.3792 -4.3253 16 7 5.7807 -3.4679 -3.6329 17 14 6.6833 -2.5096 -6.0689 18 1 8.1679 -2.5260 -6.0381 19 1 6.1873 -3.7627 -6.6926 20 1 6.2175 -1.3438 -6.8620 21 6 4.2360 -0.0475 -2.2055 22 6 3.0011 -0.2725 -3.1189 23 6 2.3265 1.1217 -3.1240 24 6 3.5058 2.1160 -3.1488 25 6 4.7198 1.3726 -2.5648 26 7 3.8561 -1.2884 -0.0781 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6766 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 3.1700 -2.0030 3.1020 35 1 5.3512 -3.1677 2.9008 36 1 6.5459 -3.0978 0.7221 37 1 5.9413 -4.3397 -4.0268 38 1 3.9476 -0.0980 -1.1555 39 1 2.3345 -1.0227 -2.6937 40 1 3.3110 -0.5553 -4.1250 41 1 1.7298 1.2601 -2.2223 42 1 1.7068 1.2425 -4.0126 43 1 3.7136 2.4231 -4.1738 44 1 3.2718 2.9880 -2.5382 45 1 5.5169 1.3189 -3.3063 46 1 5.0760 1.8839 -1.6705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179108108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:16 Heat of formation + Delta-G solvation = -2.980605 kcal Electronic energy + Delta-G solvation = -29268.781551 eV Core-core repulsion = 25546.306671 eV Total energy + Delta-G solvation = -3722.474880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.55225 -38.55071 -37.91819 -36.34458 -33.60719 -32.90325 -32.41600 -31.26221 -29.59390 -28.00811 -27.21918 -26.73443 -25.47694 -23.67573 -22.86707 -20.97332 -20.21361 -19.85230 -19.57270 -17.76999 -17.14543 -16.06557 -15.69667 -15.59897 -15.33506 -15.03848 -14.57557 -14.40355 -13.95180 -13.66487 -13.52697 -13.29149 -12.87155 -12.75966 -12.66206 -12.54876 -12.20305 -12.11283 -11.74419 -11.52459 -11.36862 -11.05508 -10.90035 -10.81617 -10.77668 -10.55434 -10.53570 -10.51783 -10.26721 -10.17267 -10.11295 -9.75701 -9.48387 -8.84531 -8.46698 -8.02567 -7.89356 -7.02733 -6.03900 -3.86133 1.34269 1.70650 3.27093 3.28410 3.33340 3.35027 3.86704 4.24600 4.56819 4.91225 4.93065 4.98790 5.09292 5.20065 5.25827 5.31679 5.36485 5.40091 5.47004 5.50613 5.60490 5.62729 5.72831 5.81690 5.90109 5.95269 6.06514 6.10073 6.15345 6.21938 6.26821 6.31171 6.38005 6.47223 6.52449 6.53991 6.65146 6.69430 6.74404 6.85849 6.96213 7.08015 7.37022 7.58016 7.70197 8.18990 8.27802 9.05843 9.23312 9.66243 10.38330 10.94960 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.006555 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.016081 B = 4270.411822 C = 5786.579127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.068 3.932 3 C -0.177 4.177 4 O -0.306 6.306 5 C 0.310 3.690 6 C -0.204 4.204 7 C -0.047 4.047 8 C -0.171 4.171 9 C 0.161 3.839 10 C 0.499 3.501 11 O -0.515 6.515 12 N -0.423 5.423 13 C -0.311 4.311 14 H 0.083 0.917 15 C 0.043 3.957 16 N -0.810 5.810 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.084 3.916 22 C -0.117 4.117 23 C -0.138 4.138 24 C -0.115 4.115 25 C -0.137 4.137 26 N -0.513 5.513 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.263 0.737 38 H 0.153 0.847 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.070 0.930 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 7.332 8.058 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 C -0.234 4.234 4 O -0.214 6.214 5 C 0.130 3.870 6 C -0.225 4.225 7 C -0.072 4.072 8 C -0.193 4.193 9 C 0.025 3.975 10 C 0.286 3.714 11 O -0.391 6.391 12 N -0.142 5.142 13 C -0.439 4.439 14 H 0.101 0.899 15 C -0.167 4.167 16 N -0.445 5.445 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.021 4.021 22 C -0.155 4.155 23 C -0.176 4.176 24 C -0.153 4.153 25 C -0.176 4.176 26 N -0.240 5.240 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.073 0.927 38 H 0.169 0.831 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.981 7.229 7.444 13.723 hybrid contribution 0.576 -0.533 -0.476 0.918 sum -8.404 6.696 6.968 12.807 Atomic orbital electron populations 1.21894 0.93330 1.02813 1.02612 1.22569 0.94250 0.93026 0.88968 1.22503 1.02621 0.95871 1.02399 1.86237 1.31917 1.64700 1.38525 1.20068 0.86056 0.90385 0.90492 1.20970 0.98532 1.04327 0.98682 1.21308 0.93020 0.95488 0.97393 1.21910 1.02831 1.01969 0.92578 1.21991 0.88467 0.90414 0.96646 1.17364 0.85831 0.86821 0.81423 1.90608 1.25996 1.44029 1.78441 1.43134 1.31951 1.31676 1.07439 1.19104 1.42200 0.92686 0.89951 0.89926 1.25412 0.97642 0.95376 0.98312 1.69991 1.41479 0.97706 1.35334 0.86147 0.79148 0.77608 0.82944 1.20511 1.21093 1.19691 1.23535 0.87678 0.86973 1.03895 1.22698 0.96654 0.94600 1.01586 1.22665 0.97418 0.96445 1.01071 1.22006 0.95623 0.97451 1.00248 1.22511 0.98053 0.96908 1.00127 1.67424 1.10539 1.23358 1.22675 0.91970 0.90603 0.91960 0.87957 0.90066 0.92454 0.91629 0.84867 0.84458 0.83856 0.92658 0.83148 0.92909 0.90555 0.91256 0.92690 0.92508 0.93015 0.91096 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.56 37.16 0.36 -1.28 16 2 C 0.07 0.94 2.36 -26.73 -0.06 0.88 16 3 C -0.18 -2.22 8.43 37.16 0.31 -1.91 16 4 O -0.31 -4.78 9.76 -18.69 -0.18 -4.96 16 5 C 0.31 5.35 7.46 -17.13 -0.13 5.23 16 6 C -0.20 -3.06 10.05 -39.15 -0.39 -3.46 16 7 C -0.05 -0.70 10.16 -39.35 -0.40 -1.10 16 8 C -0.17 -3.27 9.63 -39.02 -0.38 -3.64 16 9 C 0.16 3.58 6.58 -83.03 -0.55 3.03 16 10 C 0.50 13.21 6.61 -12.26 -0.08 13.13 16 11 O -0.51 -15.39 13.76 5.30 0.07 -15.31 16 12 N -0.42 -10.72 2.60 -106.79 -0.28 -11.00 16 13 C -0.31 -8.37 7.65 -15.02 -0.11 -8.49 16 14 H 0.08 2.14 6.54 -52.49 -0.34 1.80 16 15 C 0.04 1.18 4.99 -17.44 -0.09 1.10 16 16 N -0.81 -23.84 10.49 55.50 0.58 -23.25 16 17 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.08 1.72 2.67 -66.08 -0.18 1.55 16 22 C -0.12 -2.23 5.63 -24.55 -0.14 -2.37 16 23 C -0.14 -2.04 6.59 -25.07 -0.17 -2.20 16 24 C -0.12 -1.72 6.80 -25.61 -0.17 -1.89 16 25 C -0.14 -2.51 6.41 -25.61 -0.16 -2.68 16 26 N -0.51 -10.13 4.67 -9.88 -0.05 -10.17 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.10 1.65 3.69 -51.93 -0.19 1.46 16 31 H 0.08 0.91 5.54 -51.93 -0.29 0.62 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.95 7.16 -51.93 -0.37 0.58 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 36 H 0.14 2.76 7.66 -52.49 -0.40 2.36 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.15 2.98 1.66 -91.52 -0.15 2.83 16 39 H 0.05 1.02 6.87 -51.93 -0.36 0.67 16 40 H 0.08 1.65 7.26 -51.93 -0.38 1.27 16 41 H 0.07 0.90 3.44 -51.93 -0.18 0.72 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.43 6.28 -51.93 -0.33 1.11 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -31.93 349.41 -8.30 -40.23 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.35 Total: 7.02 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.34 Total: -4.11 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.26 Total: -44.43 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.11 Total: -20.28 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.93 -8.30 -40.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179108108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.248 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds