Wall clock time and date at job start Tue Mar 31 2020 14:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47081 * 2 1 4 4 O 1.42898 * 109.47398 * 120.00160 * 2 1 3 5 5 C 1.35664 * 117.00220 * 149.99428 * 4 2 1 6 6 C 1.39283 * 119.61805 * 180.02562 * 5 4 2 7 7 C 1.38362 * 119.32655 * 180.02562 * 6 5 4 8 8 C 1.38738 * 118.57008 * 359.74450 * 7 6 5 9 9 C 1.39244 * 119.17833 * 0.47875 * 8 7 6 10 10 C 1.47978 * 119.69730 * 179.78969 * 9 8 7 11 11 O 1.21573 * 119.99940 * 8.81906 * 10 9 8 12 12 N 1.34786 * 120.00143 * 188.81747 * 10 9 8 13 13 C 1.36776 * 119.99900 * 189.92311 * 12 10 9 14 14 H 1.07998 * 119.99799 * 222.41465 * 13 12 10 15 15 C 1.39106 * 120.00246 * 42.42280 * 13 12 10 16 16 N 1.31331 * 119.99873 * 358.14452 * 15 13 12 17 17 Si 1.86796 * 120.00377 * 178.14821 * 15 13 12 18 18 H 1.48501 * 109.47029 * 89.99788 * 17 15 13 19 19 H 1.48501 * 109.47561 * 209.99782 * 17 15 13 20 20 H 1.48501 * 109.46853 * 330.00032 * 17 15 13 21 21 C 1.46497 * 119.99619 * 9.92778 * 12 10 9 22 22 C 1.55239 * 110.57736 * 238.10104 * 21 12 10 23 23 C 1.54889 * 102.58581 * 203.34034 * 22 21 12 24 24 C 1.54271 * 104.31577 * 37.92895 * 23 22 21 25 25 C 1.53873 * 106.59604 * 336.32460 * 24 23 22 26 26 N 1.31911 * 119.61024 * 0.02562 * 5 4 2 27 27 H 1.09005 * 109.46740 * 299.99703 * 1 2 3 28 28 H 1.08995 * 109.47550 * 59.99880 * 1 2 3 29 29 H 1.09004 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46740 * 240.00297 * 2 1 3 31 31 H 1.09000 * 109.47133 * 299.99954 * 3 2 1 32 32 H 1.08997 * 109.47422 * 60.00584 * 3 2 1 33 33 H 1.09005 * 109.46954 * 180.02562 * 3 2 1 34 34 H 1.07998 * 120.33183 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.71854 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.41729 * 180.24967 * 8 7 6 37 37 H 0.97005 * 119.99833 * 180.02562 * 16 15 13 38 38 H 1.09002 * 110.43867 * 0.67842 * 21 12 10 39 39 H 1.08997 * 110.90162 * 85.04486 * 22 21 12 40 40 H 1.09003 * 110.76483 * 321.56575 * 22 21 12 41 41 H 1.08999 * 110.48654 * 279.18535 * 23 22 21 42 42 H 1.09007 * 110.48983 * 156.67730 * 23 22 21 43 43 H 1.08995 * 110.02863 * 95.60691 * 24 23 22 44 44 H 1.08994 * 110.02940 * 216.99146 * 24 23 22 45 45 H 1.09000 * 110.03561 * 119.28150 * 25 24 23 46 46 H 1.08999 * 110.03428 * 240.66920 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.1986 -1.3130 1.0652 6 6 3.7141 -1.9877 2.1692 7 6 4.9308 -2.6373 2.0591 8 6 5.5963 -2.5977 0.8424 9 6 5.0271 -1.9010 -0.2204 10 6 5.7293 -1.8474 -1.5218 11 8 6.7124 -2.5372 -1.7110 12 7 5.2791 -1.0338 -2.4975 13 6 5.7961 -1.1290 -3.7602 14 1 6.0258 -0.2336 -4.3186 15 6 6.0259 -2.3792 -4.3253 16 7 5.7807 -3.4679 -3.6329 17 14 6.6833 -2.5096 -6.0689 18 1 8.1679 -2.5260 -6.0381 19 1 6.1873 -3.7627 -6.6926 20 1 6.2175 -1.3438 -6.8620 21 6 4.2360 -0.0475 -2.2055 22 6 3.0011 -0.2725 -3.1189 23 6 2.3265 1.1217 -3.1240 24 6 3.5058 2.1160 -3.1488 25 6 4.7198 1.3726 -2.5648 26 7 3.8561 -1.2884 -0.0781 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6766 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 3.1700 -2.0030 3.1020 35 1 5.3512 -3.1677 2.9008 36 1 6.5459 -3.0978 0.7221 37 1 5.9413 -4.3397 -4.0268 38 1 3.9476 -0.0980 -1.1555 39 1 2.3345 -1.0227 -2.6937 40 1 3.3110 -0.5553 -4.1250 41 1 1.7298 1.2601 -2.2223 42 1 1.7068 1.2425 -4.0126 43 1 3.7136 2.4231 -4.1738 44 1 3.2718 2.9880 -2.5382 45 1 5.5169 1.3189 -3.3063 46 1 5.0760 1.8839 -1.6705 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179108108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:15 Heat of formation + Delta-G solvation = -22.660469 kcal Electronic energy + Delta-G solvation = -29269.634933 eV Core-core repulsion = 25546.306671 eV Total energy + Delta-G solvation = -3723.328263 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98064 -40.17654 -39.26898 -38.01603 -35.39034 -34.14051 -33.97207 -33.03579 -31.03447 -29.44493 -28.34638 -28.11182 -27.32474 -25.15884 -24.32995 -22.18749 -21.90226 -21.27712 -21.03290 -19.31943 -18.68853 -17.79109 -17.12447 -17.01770 -16.72783 -16.63267 -16.12807 -15.84465 -15.45362 -15.27585 -15.08894 -14.61265 -14.38918 -14.14849 -14.04592 -13.88272 -13.53183 -13.18056 -13.09228 -12.98457 -12.88610 -12.76044 -12.61962 -12.45784 -12.16494 -12.01573 -11.93998 -11.86997 -11.77227 -11.64045 -11.49004 -11.04127 -10.89005 -10.82331 -10.33986 -9.60250 -9.43282 -9.00478 -8.10549 -5.98402 -0.11559 0.35102 1.36854 1.41145 1.49473 2.07054 2.24263 2.40766 2.93643 3.11271 3.31532 3.35656 3.94287 3.97043 4.00129 4.06925 4.08828 4.11885 4.16250 4.29278 4.36318 4.42363 4.62448 4.64649 4.76391 4.81756 4.83523 4.91071 4.92106 4.95786 5.01760 5.07242 5.10340 5.17087 5.21034 5.23502 5.29929 5.33763 5.40437 5.41820 5.53863 5.59073 5.63398 5.86238 6.18147 6.32813 6.77157 7.02571 7.27321 7.70792 8.40962 8.89012 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.006555 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.016081 B = 4270.411822 C = 5786.579127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 C -0.172 4.172 4 O -0.302 6.302 5 C 0.297 3.703 6 C -0.180 4.180 7 C -0.028 4.028 8 C -0.180 4.180 9 C 0.122 3.878 10 C 0.487 3.513 11 O -0.568 6.568 12 N -0.438 5.438 13 C -0.327 4.327 14 H 0.083 0.917 15 C -0.010 4.010 16 N -0.854 5.854 17 Si 0.979 3.021 18 H -0.284 1.284 19 H -0.282 1.282 20 H -0.254 1.254 21 C 0.075 3.925 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.108 4.108 25 C -0.137 4.137 26 N -0.521 5.521 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.177 0.823 35 H 0.188 0.812 36 H 0.131 0.869 37 H 0.256 0.744 38 H 0.166 0.834 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.619 9.274 10.202 18.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 C -0.229 4.229 4 O -0.210 6.210 5 C 0.117 3.883 6 C -0.200 4.200 7 C -0.053 4.053 8 C -0.201 4.201 9 C -0.013 4.013 10 C 0.275 3.725 11 O -0.448 6.448 12 N -0.156 5.156 13 C -0.456 4.456 14 H 0.100 0.900 15 C -0.215 4.215 16 N -0.491 5.491 17 Si 0.803 3.197 18 H -0.210 1.210 19 H -0.208 1.208 20 H -0.178 1.178 21 C -0.029 4.029 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.146 4.146 25 C -0.175 4.175 26 N -0.248 5.248 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.194 0.806 35 H 0.205 0.795 36 H 0.149 0.851 37 H 0.065 0.935 38 H 0.181 0.819 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.645 9.221 9.578 17.674 hybrid contribution 1.303 -1.090 -0.900 1.922 sum -10.343 8.131 8.678 15.761 Atomic orbital electron populations 1.21913 0.90727 1.03115 1.04405 1.22800 0.96246 0.93306 0.87432 1.22470 1.01105 0.95197 1.04135 1.86261 1.30844 1.64622 1.39225 1.20476 0.86548 0.90856 0.90425 1.21540 0.97933 1.01251 0.99287 1.21781 0.92324 0.94422 0.96751 1.21993 1.02818 1.01594 0.93740 1.21397 0.90199 0.94102 0.95580 1.18110 0.85567 0.85788 0.83038 1.90535 1.28276 1.45820 1.80143 1.43427 1.32844 1.32410 1.06881 1.19328 1.42616 0.92669 0.90988 0.89980 1.26291 0.97980 0.95075 1.02173 1.70165 1.44037 0.97833 1.37019 0.85160 0.77905 0.78113 0.78486 1.21031 1.20782 1.17777 1.23881 0.87066 0.86829 1.05103 1.22579 0.96374 0.97243 0.98999 1.22631 0.97435 0.92955 1.03189 1.21990 0.93693 0.97999 1.00890 1.22484 0.98951 0.96291 0.99814 1.67125 1.09801 1.23480 1.24423 0.90364 0.88611 0.92473 0.90553 0.88393 0.90621 0.93905 0.80567 0.79485 0.85123 0.93450 0.81931 0.94024 0.93989 0.88936 0.90748 0.92093 0.89740 0.93918 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.56 71.98 0.69 -1.97 16 2 C 0.06 1.47 2.36 30.59 0.07 1.54 16 3 C -0.17 -3.78 8.43 71.98 0.61 -3.17 16 4 O -0.30 -8.57 9.76 -89.80 -0.88 -9.45 16 5 C 0.30 9.68 7.46 84.93 0.63 10.32 16 6 C -0.18 -4.68 10.05 22.55 0.23 -4.45 16 7 C -0.03 -0.75 10.16 22.42 0.23 -0.52 16 8 C -0.18 -6.91 9.63 22.63 0.22 -6.69 16 9 C 0.12 5.62 6.58 41.80 0.27 5.90 16 10 C 0.49 27.54 6.61 86.82 0.57 28.11 16 11 O -0.57 -36.56 13.76 -3.95 -0.05 -36.62 16 12 N -0.44 -23.57 2.60 -610.05 -1.59 -25.16 16 13 C -0.33 -18.74 7.65 84.13 0.64 -18.10 16 14 H 0.08 4.54 6.54 -2.91 -0.02 4.52 16 15 C -0.01 -0.57 4.99 84.98 0.42 -0.15 16 16 N -0.85 -53.73 10.49 21.69 0.23 -53.50 16 17 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.25 -11.04 7.11 99.48 0.71 -10.33 16 21 C 0.07 3.17 2.67 46.19 0.12 3.29 16 22 C -0.11 -4.44 5.63 32.01 0.18 -4.26 16 23 C -0.12 -3.42 6.59 31.67 0.21 -3.21 16 24 C -0.11 -3.00 6.80 31.32 0.21 -2.78 16 25 C -0.14 -5.07 6.41 31.32 0.20 -4.87 16 26 N -0.52 -20.68 4.67 -298.23 -1.39 -22.07 16 27 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.08 2.38 3.69 -2.38 -0.01 2.37 16 31 H 0.10 1.78 5.54 -2.39 -0.01 1.76 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.14 7.16 -2.38 -0.02 1.13 16 34 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.13 5.28 7.66 -2.91 -0.02 5.26 16 37 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 38 H 0.17 6.57 1.66 -80.55 -0.13 6.44 16 39 H 0.04 1.67 6.87 -2.39 -0.02 1.66 16 40 H 0.04 1.90 7.26 -2.39 -0.02 1.88 16 41 H 0.09 2.09 3.44 -2.39 -0.01 2.08 16 42 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.80 6.28 -2.39 -0.01 1.78 16 46 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -77.84 349.41 4.74 -73.11 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.88 Total: 26.59 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 5.52 Total: -1.01 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -2.75 Total: -100.74 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.93 Total: -46.07 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.84 4.74 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179108108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.446 kcal (2) G-P(sol) polarization free energy of solvation -77.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds