Wall clock time and date at job start Tue Mar 31 2020 14:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47525 * 2 1 4 4 O 1.42899 * 109.47332 * 239.99425 * 2 1 3 5 5 C 1.35492 * 117.00318 * 210.00278 * 4 2 1 6 6 C 1.39167 * 119.52544 * 180.02562 * 5 4 2 7 7 C 1.37957 * 119.26500 * 179.97438 * 6 5 4 8 8 C 1.40284 * 118.35546 * 359.97438 * 7 6 5 9 9 C 1.47615 * 120.49832 * 180.02562 * 8 7 6 10 10 O 1.21585 * 120.00155 * 330.03473 * 9 8 7 11 11 N 1.34782 * 119.99967 * 150.03671 * 9 8 7 12 12 C 1.46496 * 119.99743 * 6.10261 * 11 9 8 13 13 C 1.50698 * 109.46804 * 98.40634 * 12 11 9 14 14 H 1.07998 * 120.00286 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99985 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99607 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00053 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47109 * 90.00299 * 17 15 13 19 19 H 1.48498 * 109.47071 * 210.00178 * 17 15 13 20 20 H 1.48502 * 109.47493 * 330.00440 * 17 15 13 21 21 C 1.46496 * 119.99627 * 186.10654 * 11 9 8 22 22 C 1.52997 * 109.47310 * 85.30422 * 21 11 9 23 23 C 1.53000 * 117.49820 * 243.49454 * 22 21 11 24 24 C 1.52999 * 117.50049 * 174.83565 * 22 21 11 25 25 C 1.39526 * 119.00552 * 0.02562 * 8 7 6 26 26 N 1.31670 * 120.62258 * 359.74052 * 25 8 7 27 27 H 1.08998 * 109.46756 * 60.00018 * 1 2 3 28 28 H 1.08993 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47009 * 300.00755 * 1 2 3 30 30 H 1.09007 * 109.46914 * 120.00116 * 2 1 3 31 31 H 1.08997 * 109.46600 * 299.99978 * 3 2 1 32 32 H 1.08997 * 109.47110 * 59.99394 * 3 2 1 33 33 H 1.08996 * 109.46992 * 180.02562 * 3 2 1 34 34 H 1.07995 * 120.37236 * 359.95314 * 6 5 4 35 35 H 1.08003 * 120.82373 * 180.02562 * 7 6 5 36 36 H 1.09005 * 109.47081 * 218.40057 * 12 11 9 37 37 H 1.08998 * 109.47332 * 338.40162 * 12 11 9 38 38 H 0.97001 * 119.99739 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.47027 * 205.30199 * 21 11 9 40 40 H 1.08998 * 109.47916 * 325.30008 * 21 11 9 41 41 H 1.09003 * 115.55293 * 29.16286 * 22 21 11 42 42 H 1.08996 * 117.50054 * 0.02562 * 23 22 21 43 43 H 1.09001 * 117.49588 * 145.02038 * 23 22 21 44 44 H 1.09009 * 117.50049 * 214.98093 * 24 22 21 45 45 H 1.09002 * 117.50300 * 359.97438 * 24 22 21 46 46 H 1.07998 * 119.68990 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.1971 -1.3123 -1.0653 6 6 3.7109 -1.9850 -2.1699 7 6 4.9239 -2.6329 -2.0608 8 6 5.5960 -2.5861 -0.8303 9 6 6.8972 -3.2622 -0.6611 10 8 7.1520 -4.2606 -1.3066 11 7 7.8028 -2.7730 0.2089 12 6 7.4478 -1.6520 1.0827 13 6 7.0661 -2.1768 2.4429 14 1 7.0856 -3.2391 2.6368 15 6 6.6919 -1.3008 3.4397 16 7 6.6677 -0.0073 3.2034 17 14 6.2181 -1.9513 5.1254 18 1 7.4264 -2.0242 5.9854 19 1 5.2231 -1.0401 5.7459 20 1 5.6279 -3.3068 4.9851 21 6 9.1422 -3.3621 0.2806 22 6 10.0396 -2.7190 -0.7786 23 6 10.5836 -3.6227 -1.8868 24 6 11.5178 -3.1137 -0.7863 25 6 5.0160 -1.8908 0.2313 26 7 3.8579 -1.2825 0.0817 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 3.1658 -2.0001 -3.1021 35 1 5.3462 -3.1623 -2.9022 36 1 8.3018 -0.9814 1.1786 37 1 6.6059 -1.1091 0.6533 38 1 6.4041 0.6090 3.9045 39 1 9.5642 -3.1857 1.2701 40 1 9.0776 -4.4349 0.0993 41 1 9.7918 -1.6911 -1.0436 42 1 10.3018 -4.6753 -1.8616 43 1 10.6940 -3.1893 -2.8808 44 1 12.2425 -2.3456 -1.0567 45 1 11.8511 -3.8312 -0.0365 46 1 5.5236 -1.8480 1.1836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264017904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:07 Heat of formation + Delta-G solvation = -10.407525 kcal Electronic energy + Delta-G solvation = -27281.965092 eV Core-core repulsion = 23559.168157 eV Total energy + Delta-G solvation = -3722.796935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.00493 -40.73498 -39.02451 -38.11652 -36.74916 -34.51165 -34.25392 -33.49234 -31.71344 -29.64362 -28.20322 -27.91402 -25.37151 -25.01162 -24.35276 -23.17958 -22.25167 -21.76388 -20.54991 -19.50896 -18.68070 -18.52817 -17.81527 -17.13123 -16.78548 -16.42675 -16.13807 -15.91348 -15.72888 -15.42593 -15.14281 -14.89986 -14.67323 -14.29520 -14.27580 -14.06971 -13.76359 -13.44669 -13.26468 -13.16373 -13.00942 -12.88874 -12.80988 -12.57925 -12.38264 -12.32739 -12.07144 -11.89909 -11.78260 -11.63508 -11.34150 -10.96516 -10.94328 -10.79044 -10.63232 -10.39381 -9.58803 -9.40334 -8.25471 -6.42417 -0.17460 0.23769 1.41066 1.44207 1.52729 1.84209 1.97801 2.19444 2.40370 2.81054 2.95384 3.02991 3.37299 3.67907 3.85842 3.91386 3.99100 4.02699 4.03903 4.07874 4.10510 4.16403 4.29632 4.40732 4.63020 4.68527 4.70544 4.78165 4.81428 4.83240 4.85010 4.86394 4.93316 4.97144 5.02582 5.16694 5.18970 5.21009 5.27089 5.27863 5.29138 5.48792 5.62611 5.77728 5.94955 6.21076 6.50180 6.74428 6.84348 7.21536 7.33127 8.78111 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009853 B = 0.005037 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.089903 B = 5557.096894 C = 7695.212435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 C -0.162 4.162 4 O -0.301 6.301 5 C 0.324 3.676 6 C -0.202 4.202 7 C 0.012 3.988 8 C -0.249 4.249 9 C 0.565 3.435 10 O -0.582 6.582 11 N -0.589 5.589 12 C 0.227 3.773 13 C -0.556 4.556 14 H 0.058 0.942 15 C 0.036 3.964 16 N -0.900 5.900 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.272 1.272 21 C 0.152 3.848 22 C -0.185 4.185 23 C -0.170 4.170 24 C -0.155 4.155 25 C 0.151 3.849 26 N -0.559 5.559 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.177 0.823 35 H 0.164 0.836 36 H 0.019 0.981 37 H 0.052 0.948 38 H 0.271 0.729 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 0.279 -7.773 8.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.014 3.986 3 C -0.220 4.220 4 O -0.209 6.209 5 C 0.145 3.855 6 C -0.222 4.222 7 C -0.014 4.014 8 C -0.254 4.254 9 C 0.355 3.645 10 O -0.465 6.465 11 N -0.317 5.317 12 C 0.106 3.894 13 C -0.594 4.594 14 H 0.076 0.924 15 C -0.168 4.168 16 N -0.537 5.537 17 Si 0.777 3.223 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.197 1.197 21 C 0.029 3.971 22 C -0.204 4.204 23 C -0.207 4.207 24 C -0.192 4.192 25 C -0.004 4.004 26 N -0.283 5.283 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.194 0.806 35 H 0.182 0.818 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.907 0.466 -7.522 8.994 hybrid contribution 0.342 -0.339 0.701 0.851 sum -4.565 0.127 -6.821 8.209 Atomic orbital electron populations 1.21881 0.90163 1.03357 1.04299 1.22585 0.96285 0.92785 0.86928 1.22160 1.00641 0.95431 1.03733 1.86213 1.31036 1.64065 1.39562 1.20529 0.86046 0.88698 0.90221 1.21189 0.97872 1.03397 0.99708 1.21607 0.91709 0.92101 0.95984 1.20872 0.98822 1.07876 0.97830 1.18103 0.83851 0.83366 0.79212 1.90639 1.80154 1.26270 1.49469 1.48020 1.12431 1.34591 1.36671 1.19906 0.96910 0.84398 0.88188 1.21530 1.47502 0.93814 0.96547 0.92418 1.25602 0.94450 0.94809 1.01931 1.70001 1.46127 1.02457 1.35126 0.85643 0.78389 0.78420 0.79880 1.19617 1.20466 1.19685 1.20933 0.80714 0.96869 0.98544 1.22608 0.96907 0.99586 1.01308 1.22999 1.03762 0.99371 0.94524 1.23036 0.91145 1.03635 1.01386 1.24875 0.87996 0.85799 1.01697 1.67523 1.10860 1.24890 1.24988 0.90563 0.91898 0.88685 0.91296 0.90760 0.89531 0.94694 0.80610 0.81839 0.96302 0.93089 0.91950 0.89965 0.91218 0.89245 0.89202 0.88360 0.87267 0.87727 0.77667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.56 71.98 0.69 -2.02 16 2 C 0.07 1.94 3.10 30.59 0.09 2.04 16 3 C -0.16 -4.24 9.53 71.98 0.69 -3.56 16 4 O -0.30 -9.32 9.75 -87.93 -0.86 -10.18 16 5 C 0.32 11.39 7.46 84.83 0.63 12.03 16 6 C -0.20 -6.10 10.02 22.43 0.22 -5.87 16 7 C 0.01 0.38 9.72 22.70 0.22 0.60 16 8 C -0.25 -10.19 5.59 -19.99 -0.11 -10.30 16 9 C 0.57 24.67 7.44 86.72 0.64 25.31 16 10 O -0.58 -26.45 16.39 -3.98 -0.07 -26.52 16 11 N -0.59 -25.42 2.47 -829.84 -2.05 -27.47 16 12 C 0.23 10.81 4.62 85.63 0.40 11.21 16 13 C -0.56 -28.12 7.48 25.60 0.19 -27.93 16 14 H 0.06 2.98 7.81 -2.91 -0.02 2.95 16 15 C 0.04 1.81 5.34 84.66 0.45 2.26 16 16 N -0.90 -47.75 13.29 21.45 0.28 -47.47 16 17 Si 0.95 40.83 29.54 68.60 2.03 42.85 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 21 C 0.15 5.70 5.69 86.38 0.49 6.19 16 22 C -0.18 -5.94 5.98 -10.80 -0.06 -6.01 16 23 C -0.17 -4.65 10.18 30.62 0.31 -4.34 16 24 C -0.15 -3.79 10.25 30.62 0.31 -3.48 16 25 C 0.15 6.67 8.66 85.03 0.74 7.40 16 26 N -0.56 -23.03 8.61 -307.83 -2.65 -25.68 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 2.26 6.98 -2.38 -0.02 2.24 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.18 3.94 8.06 -2.91 -0.02 3.91 16 35 H 0.16 4.70 7.99 -2.91 -0.02 4.68 16 36 H 0.02 0.96 8.13 -2.38 -0.02 0.94 16 37 H 0.05 2.58 4.08 -2.39 -0.01 2.57 16 38 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 39 H 0.08 3.08 8.04 -2.38 -0.02 3.06 16 40 H 0.07 2.63 7.22 -2.39 -0.02 2.62 16 41 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 43 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.21 10.19 3.08 -2.91 -0.01 10.18 16 Total: -1.00 -59.85 381.14 3.57 -56.28 By element: Atomic # 1 Polarization: 33.66 SS G_CDS: 0.98 Total: 34.64 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.91 Total: 3.54 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -4.42 Total: -100.61 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.92 Total: -36.70 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -59.85 3.57 -56.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264017904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.874 kcal (2) G-P(sol) polarization free energy of solvation -59.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds