Wall clock time and date at job start Tue Mar 31 2020 14:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47272 * 2 1 4 4 O 1.42902 * 109.47054 * 120.00301 * 2 1 3 5 5 C 1.35676 * 117.00271 * 149.99677 * 4 2 1 6 6 C 1.38902 * 119.62159 * 179.97438 * 5 4 2 7 7 C 1.39579 * 118.94230 * 180.02562 * 6 5 4 8 8 C 1.48163 * 120.88622 * 179.97438 * 7 6 5 9 9 O 1.21504 * 120.00491 * 331.56965 * 8 7 6 10 10 N 1.34775 * 119.99584 * 151.56900 * 8 7 6 11 11 C 1.46506 * 120.00376 * 5.99032 * 10 8 7 12 12 C 1.50703 * 109.46808 * 97.86995 * 11 10 8 13 13 H 1.07997 * 120.00388 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99836 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99954 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99983 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46948 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46714 * 119.99761 * 16 14 12 19 19 H 1.48500 * 109.47035 * 239.99679 * 16 14 12 20 20 C 1.46496 * 119.99985 * 185.99104 * 10 8 7 21 21 C 1.52993 * 109.47203 * 94.51083 * 20 10 8 22 22 C 1.53006 * 117.50141 * 243.51810 * 21 20 10 23 23 C 1.53008 * 117.50043 * 174.85720 * 21 20 10 24 24 C 1.39967 * 118.21826 * 0.02562 * 7 6 5 25 25 C 1.37974 * 119.13460 * 359.97438 * 24 7 6 26 26 N 1.31906 * 120.97769 * 0.03002 * 25 24 7 27 27 H 1.08994 * 109.47322 * 300.00302 * 1 2 3 28 28 H 1.09006 * 109.47347 * 59.99976 * 1 2 3 29 29 H 1.08998 * 109.47960 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46869 * 239.99408 * 2 1 3 31 31 H 1.08995 * 109.47276 * 299.99949 * 3 2 1 32 32 H 1.09005 * 109.47324 * 60.00309 * 3 2 1 33 33 H 1.09008 * 109.47170 * 179.97438 * 3 2 1 34 34 H 1.07997 * 120.52886 * 0.02640 * 6 5 4 35 35 H 1.08995 * 109.47318 * 217.87256 * 11 10 8 36 36 H 1.09004 * 109.46952 * 337.87641 * 11 10 8 37 37 H 0.96998 * 119.99916 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.47152 * 214.51284 * 20 10 8 39 39 H 1.09001 * 109.47198 * 334.51192 * 20 10 8 40 40 H 1.08998 * 115.55134 * 29.19153 * 21 20 10 41 41 H 1.08998 * 117.49165 * 0.02562 * 22 21 20 42 42 H 1.08998 * 117.49685 * 145.02195 * 22 21 20 43 43 H 1.09001 * 117.49950 * 214.97861 * 23 21 20 44 44 H 1.08997 * 117.49921 * 0.02562 * 23 21 20 45 45 H 1.07999 * 120.42954 * 179.72178 * 24 7 6 46 46 H 1.07999 * 119.51214 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1986 -1.3131 1.0653 6 6 3.7132 -1.9852 2.1666 7 6 4.9412 -2.6377 2.0466 8 6 5.5303 -3.3671 3.1938 9 8 5.2793 -3.0170 4.3299 10 7 6.3445 -4.4190 2.9772 11 6 6.7524 -4.7607 1.6122 12 6 8.1177 -4.1849 1.3369 13 1 8.6304 -3.6212 2.1022 14 6 8.7122 -4.3778 0.1079 15 7 8.0876 -5.0639 -0.8243 16 14 10.4047 -3.6647 -0.2332 17 1 10.8887 -2.9416 0.9701 18 1 11.3476 -4.7637 -0.5623 19 1 10.3234 -2.7227 -1.3782 20 6 6.8218 -5.2207 4.1066 21 6 5.9005 -6.4265 4.3014 22 6 5.1199 -6.5144 5.6144 23 6 6.2994 -7.4565 5.3603 24 6 5.6017 -2.5836 0.8137 25 6 5.0202 -1.8937 -0.2302 26 7 3.8578 -1.2886 -0.0801 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 3.1718 -2.0025 3.1009 35 1 6.7867 -5.8448 1.5039 36 1 6.0342 -4.3473 0.9041 37 1 8.5060 -5.1999 -1.6887 38 1 7.8353 -5.5667 3.9040 39 1 6.8197 -4.6120 5.0108 40 1 5.4117 -6.7952 3.3997 41 1 5.2624 -5.7128 6.3392 42 1 4.1177 -6.9413 5.5765 43 1 6.0725 -8.5028 5.1552 44 1 7.2178 -7.2749 5.9183 45 1 6.5559 -3.0721 0.6824 46 1 5.5247 -1.8477 -1.1840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268306404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:10 Heat of formation + Delta-G solvation = -7.324575 kcal Electronic energy + Delta-G solvation = -27044.456370 eV Core-core repulsion = 23321.793122 eV Total energy + Delta-G solvation = -3722.663248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.02379 -40.77919 -39.05806 -38.23069 -36.78669 -34.51358 -34.22119 -33.63185 -31.28815 -29.58449 -28.36465 -28.13096 -25.62268 -24.81382 -24.25723 -23.21809 -22.68066 -21.60960 -20.67578 -19.29378 -18.57245 -18.25850 -17.45588 -17.18362 -16.90098 -16.67663 -16.30669 -16.07370 -15.87020 -15.38896 -15.19393 -14.90731 -14.71744 -14.54270 -14.32173 -14.07231 -13.74950 -13.38194 -13.25678 -13.15306 -12.96492 -12.85684 -12.75708 -12.57544 -12.35071 -12.20106 -12.05647 -11.77594 -11.75269 -11.65397 -11.38457 -11.19101 -10.95007 -10.83244 -10.65638 -10.36081 -9.57310 -9.40758 -8.22580 -6.38242 -0.27548 0.17946 1.43188 1.48741 1.57377 1.72722 1.89455 2.24753 2.42820 2.78502 2.91941 3.06833 3.27181 3.52138 3.82497 3.92837 3.97438 4.00726 4.05144 4.06694 4.11357 4.30076 4.30979 4.38227 4.63173 4.67953 4.71512 4.76146 4.79081 4.80786 4.85916 4.87921 4.92298 4.97581 5.00411 5.20221 5.22418 5.25240 5.26743 5.27713 5.28662 5.49785 5.64487 5.75247 5.98480 6.26673 6.44945 6.74770 6.77121 7.11822 7.33804 8.81782 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009617 B = 0.004618 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.795394 B = 6061.363210 C = 8376.824572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.070 3.930 3 C -0.163 4.163 4 O -0.311 6.311 5 C 0.304 3.696 6 C -0.148 4.148 7 C -0.066 4.066 8 C 0.554 3.446 9 O -0.580 6.580 10 N -0.580 5.580 11 C 0.218 3.782 12 C -0.551 4.551 13 H 0.054 0.946 14 C 0.038 3.962 15 N -0.903 5.903 16 Si 0.950 3.050 17 H -0.275 1.275 18 H -0.279 1.279 19 H -0.272 1.272 20 C 0.148 3.852 21 C -0.186 4.186 22 C -0.174 4.174 23 C -0.152 4.152 24 C -0.195 4.195 25 C 0.130 3.870 26 N -0.526 5.526 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.145 0.855 35 H 0.019 0.981 36 H 0.067 0.933 37 H 0.272 0.728 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.196 0.804 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 3.954 1.253 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 C -0.220 4.220 4 O -0.219 6.219 5 C 0.125 3.875 6 C -0.170 4.170 7 C -0.077 4.077 8 C 0.343 3.657 9 O -0.462 6.462 10 N -0.308 5.308 11 C 0.098 3.902 12 C -0.589 4.589 13 H 0.072 0.928 14 C -0.165 4.165 15 N -0.541 5.541 16 Si 0.776 3.224 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.198 1.198 20 C 0.025 3.975 21 C -0.205 4.205 22 C -0.211 4.211 23 C -0.190 4.190 24 C -0.214 4.214 25 C -0.025 4.025 26 N -0.250 5.250 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.162 0.838 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.212 0.788 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.927 4.509 1.170 10.966 hybrid contribution 1.456 -0.282 0.161 1.492 sum -8.471 4.227 1.332 9.561 Atomic orbital electron populations 1.21908 0.90773 1.03182 1.04211 1.22632 0.95997 0.92955 0.86971 1.22186 1.00955 0.95187 1.03721 1.86274 1.30942 1.64724 1.39995 1.19535 0.87046 0.91417 0.89467 1.21010 0.96290 1.00360 0.99345 1.20122 0.95005 0.97865 0.94663 1.18335 0.78986 0.80526 0.87874 1.90642 1.63484 1.68115 1.23967 1.48039 1.45068 1.27699 1.10038 1.20138 0.95760 0.96423 0.77863 1.21516 1.02683 1.35335 0.99350 0.92762 1.25517 1.00672 0.94747 0.95548 1.70000 1.39379 1.39206 1.05474 0.85615 0.80087 0.78413 0.78290 1.19937 1.20506 1.19769 1.20992 0.97102 0.90480 0.88897 1.22605 1.04076 0.99436 0.94401 1.23046 0.97068 1.02722 0.98264 1.23032 0.99281 0.96087 1.00564 1.24057 1.05643 0.99473 0.92222 1.22728 0.89352 0.90694 0.99716 1.67145 1.10677 1.22945 1.24215 0.91301 0.88097 0.92232 0.90182 0.88786 0.91708 0.93959 0.83763 0.96309 0.91592 0.91824 0.89967 0.90780 0.89043 0.89164 0.88267 0.87193 0.87655 0.78761 0.79989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.56 71.98 0.69 -1.79 16 2 C 0.07 1.68 3.11 30.59 0.10 1.77 16 3 C -0.16 -3.42 9.53 71.98 0.69 -2.74 16 4 O -0.31 -9.65 9.76 -89.94 -0.88 -10.53 16 5 C 0.30 10.69 7.45 84.80 0.63 11.33 16 6 C -0.15 -5.61 9.63 22.75 0.22 -5.40 16 7 C -0.07 -2.72 5.62 -19.90 -0.11 -2.83 16 8 C 0.55 24.42 7.51 86.88 0.65 25.07 16 9 O -0.58 -27.13 16.25 -3.73 -0.06 -27.19 16 10 N -0.58 -24.76 2.46 -829.22 -2.04 -26.81 16 11 C 0.22 10.02 4.67 85.63 0.40 10.42 16 12 C -0.55 -26.80 7.54 25.60 0.19 -26.61 16 13 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 14 C 0.04 1.84 5.30 84.66 0.45 2.29 16 15 N -0.90 -45.26 13.29 21.45 0.28 -44.98 16 16 Si 0.95 39.00 29.54 68.60 2.03 41.02 16 17 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 C 0.15 5.51 5.79 86.38 0.50 6.01 16 21 C -0.19 -5.97 6.01 -10.79 -0.06 -6.04 16 22 C -0.17 -4.77 10.18 30.62 0.31 -4.46 16 23 C -0.15 -3.73 10.26 30.62 0.31 -3.42 16 24 C -0.19 -7.86 7.60 22.63 0.17 -7.69 16 25 C 0.13 4.61 11.17 84.62 0.94 5.55 16 26 N -0.53 -18.13 8.61 -309.15 -2.66 -20.80 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 2.07 6.98 -2.39 -0.02 2.05 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.14 5.28 7.97 -2.91 -0.02 5.25 16 35 H 0.02 0.92 8.13 -2.39 -0.02 0.90 16 36 H 0.07 3.12 4.03 -2.40 -0.01 3.11 16 37 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 38 H 0.08 3.05 8.11 -2.39 -0.02 3.03 16 39 H 0.07 2.80 6.96 -2.39 -0.02 2.78 16 40 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 42 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.20 8.73 3.05 -2.91 -0.01 8.72 16 46 H 0.18 5.57 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -56.90 381.02 3.72 -53.17 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.98 Total: 34.63 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.08 Total: 1.48 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -4.42 Total: -92.58 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.94 Total: -37.73 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.02 kcal Total: -56.90 3.72 -53.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268306404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.850 kcal (2) G-P(sol) polarization free energy of solvation -56.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds