Wall clock time and date at job start Tue Mar 31 2020 14:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47054 * 2 1 4 4 O 1.42898 * 109.47365 * 120.00217 * 2 1 3 5 5 C 1.35685 * 117.00105 * 150.00011 * 4 2 1 6 6 C 1.38851 * 119.61694 * 179.97438 * 5 4 2 7 7 C 1.39669 * 118.93763 * 179.97438 * 6 5 4 8 8 C 1.48002 * 120.90317 * 179.97438 * 7 6 5 9 9 O 1.21558 * 120.00108 * 133.39845 * 8 7 6 10 10 N 1.34777 * 119.99734 * 313.40253 * 8 7 6 11 11 C 1.36803 * 119.99950 * 184.52079 * 10 8 7 12 12 H 1.07999 * 120.00233 * 223.13531 * 11 10 8 13 13 C 1.39100 * 119.99769 * 43.12654 * 11 10 8 14 14 N 1.31326 * 120.00080 * 14.24084 * 13 11 10 15 15 Si 1.86800 * 119.99818 * 194.23096 * 13 11 10 16 16 H 1.48503 * 109.46981 * 60.00932 * 15 13 11 17 17 H 1.48501 * 109.46929 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47417 * 300.00318 * 15 13 11 19 19 C 1.46498 * 120.00254 * 4.52247 * 10 8 7 20 20 C 1.54268 * 110.03332 * 232.32634 * 19 10 8 21 21 C 1.54959 * 104.16123 * 217.13637 * 20 19 10 22 22 C 1.54892 * 102.78135 * 37.88790 * 21 20 19 23 23 C 1.53876 * 110.03445 * 115.11157 * 19 10 8 24 24 C 1.40057 * 118.20066 * 0.02562 * 7 6 5 25 25 C 1.37937 * 119.12527 * 359.97438 * 24 7 6 26 26 N 1.31936 * 120.98099 * 359.75099 * 25 24 7 27 27 H 1.08999 * 109.47249 * 299.99680 * 1 2 3 28 28 H 1.08996 * 109.47525 * 59.99852 * 1 2 3 29 29 H 1.09002 * 109.47594 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47249 * 240.00319 * 2 1 3 31 31 H 1.09003 * 109.47650 * 300.00104 * 3 2 1 32 32 H 1.08997 * 109.47568 * 60.00085 * 3 2 1 33 33 H 1.09007 * 109.47275 * 180.02562 * 3 2 1 34 34 H 1.07998 * 120.53515 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00117 * 184.96833 * 14 13 11 36 36 H 1.09001 * 110.01970 * 353.72228 * 19 10 8 37 37 H 1.08999 * 110.48283 * 335.78638 * 20 19 10 38 38 H 1.08996 * 110.48203 * 98.42500 * 20 19 10 39 39 H 1.08998 * 110.72392 * 279.57788 * 21 20 19 40 40 H 1.09000 * 110.92738 * 156.29877 * 21 20 19 41 41 H 1.08994 * 110.49074 * 203.40571 * 22 21 20 42 42 H 1.09004 * 110.59427 * 80.81384 * 22 21 20 43 43 H 1.09001 * 110.03297 * 238.57168 * 23 19 10 44 44 H 1.09006 * 110.03196 * 359.94971 * 23 19 10 45 45 H 1.07996 * 120.44119 * 180.02562 * 24 7 6 46 46 H 1.07998 * 119.51022 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1988 -1.3130 1.0651 6 6 3.7132 -1.9848 2.1661 7 6 4.9415 -2.6385 2.0456 8 6 5.5304 -3.3672 3.1913 9 8 5.9804 -4.4854 3.0340 10 7 5.5676 -2.7910 4.4091 11 6 6.1939 -3.4250 5.4470 12 1 5.7337 -3.4458 6.4239 13 6 7.4234 -4.0432 5.2441 14 7 8.1143 -3.7897 4.1565 15 14 8.0918 -5.2337 6.5190 16 1 7.1444 -6.3653 6.6843 17 1 9.4089 -5.7520 6.0696 18 1 8.2538 -4.5301 7.8165 19 6 4.9373 -1.4857 4.6215 20 6 5.9425 -0.5130 5.2719 21 6 5.0819 0.3203 6.2549 22 6 4.0892 -0.7284 6.8150 23 6 3.7592 -1.6224 5.6019 24 6 5.6015 -2.5850 0.8114 25 6 5.0197 -1.8950 -0.2317 26 7 3.8548 -1.2937 -0.0823 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 3.1718 -2.0022 3.1004 35 1 8.9360 -4.2738 3.9800 36 1 4.5875 -1.0813 3.6716 37 1 6.7121 -1.0645 5.8120 38 1 6.3926 0.1316 4.5170 39 1 4.5503 1.1118 5.7267 40 1 5.6960 0.7361 7.0538 41 1 3.1878 -0.2406 7.1859 42 1 4.5570 -1.3154 7.6054 43 1 2.8378 -1.2837 5.1281 44 1 3.6558 -2.6602 5.9190 45 1 6.5531 -3.0780 0.6780 46 1 5.5230 -1.8501 -1.1861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268308333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:20 Heat of formation + Delta-G solvation = -28.445295 kcal Electronic energy + Delta-G solvation = -28010.653293 eV Core-core repulsion = 24287.074182 eV Total energy + Delta-G solvation = -3723.579112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.50323 -38.99629 -37.76805 -36.59341 -33.42999 -33.20103 -32.48911 -31.11983 -29.79026 -28.07273 -27.33155 -26.91607 -25.51178 -23.65485 -22.95053 -21.46648 -20.20098 -19.90172 -19.45965 -18.10756 -16.49344 -16.28340 -15.95716 -15.60634 -15.49345 -14.86166 -14.71151 -14.39182 -14.24360 -13.86359 -13.72470 -13.35019 -13.14110 -12.92009 -12.65133 -12.39235 -12.36958 -12.26529 -11.91571 -11.65356 -11.33831 -11.08343 -11.00644 -10.85946 -10.82769 -10.70037 -10.64619 -10.58242 -10.47547 -10.26324 -10.08471 -9.96377 -9.42687 -9.10815 -8.79400 -8.18802 -8.13247 -7.17115 -6.14845 -3.92378 1.40223 1.58256 3.16545 3.28887 3.35644 3.38492 3.93773 4.17996 4.47590 4.53003 4.81022 4.84511 4.94188 5.12669 5.18338 5.22207 5.28973 5.35396 5.44335 5.45504 5.47846 5.57786 5.64356 5.65803 5.76400 5.89800 5.94314 5.98728 6.03621 6.11725 6.14224 6.16035 6.21699 6.24746 6.32613 6.42785 6.46022 6.60349 6.73058 6.75325 6.81057 6.95225 7.17886 7.52193 7.58550 8.13250 8.21467 8.98123 9.09333 9.56954 10.19544 10.91722 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004590 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.628434 B = 6099.028353 C = 7265.775214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.167 4.167 4 O -0.304 6.304 5 C 0.312 3.688 6 C -0.177 4.177 7 C -0.011 4.011 8 C 0.508 3.492 9 O -0.525 6.525 10 N -0.430 5.430 11 C -0.331 4.331 12 H 0.082 0.918 13 C 0.066 3.934 14 N -0.830 5.830 15 Si 0.911 3.089 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.110 3.890 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.133 4.133 24 C -0.167 4.167 25 C 0.127 3.873 26 N -0.545 5.545 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.145 0.855 35 H 0.266 0.734 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.142 0.858 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.021 9.988 -5.092 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.225 4.225 4 O -0.212 6.212 5 C 0.133 3.867 6 C -0.198 4.198 7 C -0.023 4.023 8 C 0.294 3.706 9 O -0.403 6.403 10 N -0.150 5.150 11 C -0.458 4.458 12 H 0.100 0.900 13 C -0.145 4.145 14 N -0.463 5.463 15 Si 0.737 3.263 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.202 1.202 19 C 0.006 3.994 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.172 4.172 24 C -0.188 4.188 25 C -0.028 4.028 26 N -0.269 5.269 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.160 0.840 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.124 9.873 -5.705 15.248 hybrid contribution 0.873 -0.854 0.952 1.549 sum -9.250 9.018 -4.754 13.766 Atomic orbital electron populations 1.21896 0.93281 1.02869 1.02673 1.22249 0.94095 0.92669 0.88476 1.22206 1.02280 0.95815 1.02197 1.86287 1.31988 1.64732 1.38173 1.19582 0.86138 0.91236 0.89736 1.21381 0.97673 1.01902 0.98882 1.20910 0.92730 0.92325 0.96309 1.17656 0.83877 0.86333 0.82703 1.90625 1.47685 1.19014 1.82940 1.43231 1.49089 1.14339 1.08332 1.18863 1.00586 1.35426 0.90960 0.90021 1.25251 0.94839 0.97669 0.96708 1.69788 1.14036 1.36719 1.25790 0.86298 0.78073 0.81348 0.80540 1.19976 1.21177 1.20235 1.22186 0.92795 0.86294 0.98139 1.22629 0.98814 0.96729 0.98040 1.22452 0.97679 0.97303 0.98625 1.22248 0.98251 0.97002 0.97883 1.22508 0.97491 1.00904 0.96284 1.22106 1.02339 1.01620 0.92719 1.22231 0.89666 0.92283 0.98576 1.67020 1.10934 1.24453 1.24510 0.91731 0.90810 0.91906 0.89415 0.91477 0.92110 0.91920 0.83755 0.92349 0.90022 0.88975 0.93018 0.92462 0.92258 0.92756 0.91598 0.92598 0.90728 0.84038 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.56 37.15 0.36 -1.05 16 2 C 0.08 0.99 3.11 -26.74 -0.08 0.90 16 3 C -0.17 -1.80 9.53 37.15 0.35 -1.45 16 4 O -0.30 -4.66 9.76 -18.76 -0.18 -4.84 16 5 C 0.31 5.32 7.45 -17.17 -0.13 5.20 16 6 C -0.18 -3.30 7.35 -38.82 -0.29 -3.58 16 7 C -0.01 -0.24 5.17 -104.68 -0.54 -0.78 16 8 C 0.51 12.94 6.46 -12.26 -0.08 12.86 16 9 O -0.52 -15.47 14.78 5.31 0.08 -15.39 16 10 N -0.43 -10.44 2.43 -107.55 -0.26 -10.70 16 11 C -0.33 -8.67 7.22 -15.01 -0.11 -8.78 16 12 H 0.08 2.06 7.51 -52.49 -0.39 1.67 16 13 C 0.07 1.79 4.52 -17.45 -0.08 1.71 16 14 N -0.83 -23.73 11.47 55.50 0.64 -23.10 16 15 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 C 0.11 2.19 2.44 -66.81 -0.16 2.02 16 20 C -0.12 -2.34 6.40 -25.03 -0.16 -2.50 16 21 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 22 C -0.12 -1.76 6.83 -25.07 -0.17 -1.93 16 23 C -0.13 -2.29 5.75 -25.61 -0.15 -2.44 16 24 C -0.17 -3.15 9.82 -39.01 -0.38 -3.53 16 25 C 0.13 2.00 11.17 -17.62 -0.20 1.81 16 26 N -0.54 -8.90 8.61 -13.39 -0.12 -9.02 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.12 6.97 -51.93 -0.36 0.76 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.14 2.60 5.75 -52.49 -0.30 2.30 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 1.58 4.17 -51.93 -0.22 1.36 16 37 H 0.09 2.01 6.82 -51.93 -0.35 1.65 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.85 7.64 -51.93 -0.40 0.46 16 44 H 0.07 1.41 7.34 -51.93 -0.38 1.03 16 45 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 46 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -31.25 367.83 -8.35 -39.60 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.04 Total: 5.20 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.99 Total: -3.56 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.26 Total: -42.81 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.10 Total: -20.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.25 -8.35 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268308333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.158 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds